LOC110538313 (LOC106601291)


Basic Information

Item Value
gene id LOC110538313
gene name LOC106601291
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 76730857 ~ 76732118 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625045.2
GACGCAACGAGGGTCCTCCGAACTTTGCCACCAAAAATGGCGACCTCCATGCTGTGCAGGAGGACAGCAATATTTAGCTGGGCTATTCGAATGGTTTCACCCTTAAAATCGTATAATCCTGCCAGCTCACACTGCGGGCTTCTACATCAGATAGCAAATTATAACCCTAAACCACTGAAATTAAATTTGAAAGATTCATACATACCAGATAGGGAAAGCGAGAAAACTCCGGAATGGCAGAAGACAGCGAAGTATGACCGCAAGCTATTCGGGCGGTATGGCTCTTCGTCGGGAATCGACCCTGCAAAGCTGTGGCCCAGCCATGCCCAGCTCGAGGAGATGATAGCAGAGGAGAGGGAATGGAACCCTCCGCTCCAGGTGATGCTGAAGAACGTCGAGGCGAAAACGCAGGAAGCCAATGCGAAACGTCTCGCGAGAGAGAAACTGGTTGCAGCCAATATGGCCAAGATGCCTAAGATGGTGGCTGACTGGAGGAAGGAAAAACGTGAGGCGAAACAGAAGTTGAAAGATGAGAAGGCGCGTCGTGAAAGGCTGCTAGCCGAGGCCAGAGAACGCTTTGGCTATGCTATGGACCCCCGAAGCCCCAAGTTCCTGGAGATGGTCAGTGAAATcgaaaaggaggagaagaagaaaaggaaGCTGATGAAACGTAGACTAAAAGAAGAACAGAGCCACGTCCCTCCTGCTACTTCCTCGGCTGATTCCTCGTCTTAAGGCACTGACTTTGTAAATATGACTATTTAGTCAActttgtaaatgtaaatgtattgtTGTTGTCAACTGTGCGTTTTTAGTTTGGCTGCTGTAATAAATGAAACGCACTAG
>TU1264754
GGCGACCTCCATGCTGTGCAGGAGGACAGCAATATTTAGCTGGGCTATTCGAATGGTTTCACCCTTAAAATCGTATAATCCTGCCAGCTCACACTGCGGGCTTCTACATCAGATAGCAAATTATAACCCTAAACCACTGAAATTAAATTTGAAAGATTCATACATACCAGATAGGGAAAGCGAGAAAACTCCGGAATGGCAGAAGACAGCGAAGTATGACCGCAAGCTATTCGGGCGGTATGGCTCTTCGTCGGGAATCGACCCTGCAAAGCTGTGGCCCAGCCATGCCCAGCTCGAGGAGATGATAGCAGAGGAGAGGGAATGGAACCCTCCGCTCCAGAGAGAAACTGGTTGCAGCCAATATGGCCAAGATGCCTAAGATGGTGGCTGACTGGAGGAAGGAAAAACGTGAGGCGAAACAGAAGTTGAAAGATGAGAAGGCGCGTCGTGAAAGGCTGCTAGCCGAGGCCAGAGAACGCTTTGGCTATGCTATGGACCCCCGAAGCCCCAAGTTCCTGGAGATGGTCAGTGAAATcgaaaaggaggagaagaagaaaaggaaGCTGATGAAACGTAGACTAAAAGAAGAACAGAGCCACGTCCCTCCTGCTACTTCCTCGGCTGATTCCTCGTCTTAAGGCACTGACTTTGTAAATATGACTATTTAGTCAActttgtaaatgtaaatgtattgtTGTTGTCAACTGTGCGTTTTTAGTTTGGCTGCTGTAATAAATGAAACGCACTAGAA

Function

NR:

description
growth arrest and DNA damage-inducible proteins-interacting protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625045.2 False 846 mRNA 0.48 2 76730857 76732116
TU1264754 True 751 TUCP 0.47 2 76730895 76732118

Neighbor

gene id symbol gene type direction distance location
LOC110538316 LOC106601193 coding upstream 156949 76566094 ~ 76573908 (+)
LOC110538962 LOC106601199 coding upstream 176343 76489568 ~ 76554514 (+)
LOC110538319 LOC106601200 coding upstream 242092 76485644 ~ 76488765 (+)
LOC110538318 LOC106601201 coding upstream 245495 76478935 ~ 76485362 (+)
LOC118937824 bglap coding upstream 254418 76474812 ~ 76476439 (+)
LOC110538307 LOC106607087 coding downstream 77332 76809448 ~ 76811868 (+)
LOC118936312 LOC106589640 coding downstream 80142 76812258 ~ 76815056 (+)
LOC110538300 LOC106607082 coding downstream 219161 76951277 ~ 76965157 (+)
LOC110538299 LOC106601357 coding downstream 236654 76968770 ~ 76972089 (+)
LOC110538297 LOC106601356 coding downstream 259804 76991920 ~ 76996271 (+)
LOC110538324 LOC106607100 non-coding upstream 311491 76380816 ~ 76419385 (+)
G1112238 NA non-coding upstream 351478 76379153 ~ 76379379 (+)
G1112211 NA non-coding upstream 389290 76339589 ~ 76341567 (+)
G1112215 NA non-coding upstream 402600 76327882 ~ 76328257 (+)
LOC110538328 LOC106601207 non-coding upstream 415916 76302104 ~ 76327286 (+)
G1112443 NA non-coding downstream 44968 76777084 ~ 76778163 (+)
G1112446 NA non-coding downstream 50089 76782205 ~ 76782587 (+)
G1112431 NA non-coding downstream 74893 76807009 ~ 76836306 (+)
G1112464 LOC106601359 non-coding downstream 96624 76828740 ~ 76832369 (+)
LOC100136171 LOC100136171 other upstream 260630 76464742 ~ 76470326 (+)
G1112082 NA other upstream 430330 76300060 ~ 76300527 (+)
G1112079 NA other upstream 442355 76287598 ~ 76288502 (+)
G1111968 LOC106601158 other upstream 834984 75895612 ~ 75895873 (+)
LOC110538356 LOC106607146 other upstream 877145 75838066 ~ 75853712 (+)
G1113861 LOC100136012 other downstream 859605 77591721 ~ 77624996 (+)
G1113968 NA other downstream 1042102 77774218 ~ 77819621 (+)
LOC110538485 smarca4 other downstream 1113401 77845399 ~ 77864078 (+)
LOC110486564 LOC106601427 other downstream 2317889 79049969 ~ 79053051 (+)
G1115550 LOC106601417 other downstream 2342550 79074666 ~ 79077216 (+)

Expression


Co-expression Network