LOC110538309 (LOC106601361)


Basic Information

Item Value
gene id LOC110538309
gene name LOC106601361
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 76777014 ~ 76782020 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625041.2
TGGTGTCACTTCCTGTAAGACAACTTCCGCTAGGAATGACAACAACAGACAGCTGTTGTCAAGATGGCGGATGgctatggaggagaggagggtccgCTGGACGCTGAAGAACCCGGGgatcaaataaaatcaatttcGAGGCGTTGTAGAGGCCGTCCCAGGCTCACGGATTCTGACCGAGCACAAAGACGCCTCGAGTCCCGCAAGAAGTATGATGTTAGGCGAGTTTATCTTGGAGAATCTCACAAGGTTTGGAGTGAGCTTCGCCGGCGAACGAGTTTGAGTGACGCTGGACTTGCCGAGTACCTAATCCTGCTCAACTCCACGTACGGGGAGATATACCGGCAAAAATACGGAGGGAAGACAACCCCAGAAGTATGTACAAAACTGAAAATAGGGAAAAATGAGAGAGTGTCTAGCCTTTGTAGCATAGTGACCTGGTACCAGGATCACTCCCAGACCTGTCCACATGAACCGCAGCTCAGAGCTCTGGAACCACAACCTGGATTCTCCACCTCTGCTATCTGGCAGTGTGATGCTGACCATTCATTTGTGCAGCACCTCTCCTCGCCACCAAGAGGGGCCAGTGAGcttgagatggagacagagatggaggaggaagttGACAGGGACACAAGGACAGAGGAAACTGGAGGAATCATgaccaggtggaggaggagagagacagatgcccACAGACAGCTCACTGATGCAGGAGGGGATTTGGAAGTGGCCGGAGCCCCGGTGACTATGGATCAGGTGGAGGAGGCCACGGCTCTCAGCCAGCTCCCAGGGATGGAGGCCCCATCCAGGGACACTCCACTGATGGAGCATCTCTCTGAGAATCAGTCTGTCTGGGAGAtggaggtggtgatggaggcaggcAGACAGCAAGCCCAGGAGTCTGacgaggaggagacaggttacaaTGCTGTAGGGGAGGACATCAACCcagaggaggaggcggaggacctgagaagagacaggggagatgaaGGAGTGGGTACATCACAAGATGGCTACGAGtgtgttgtagtgactgcatCCTTAACTGACAGACTGGACAAAGCCGATGAGGAGGACACCACACAGACATTGGGTGACACAGTTGGTGTAGACACTCAGACCAACctccatccagtcccagcctctATGCAGGTGCCTGGGCAAGGGGAACTATTTGATTCTCAGACACTACAGACTGTGGGGACCACCTGTGAGATACCAGACCAGCGAGGAACTCTGGACGGTTCtcagCTGATCATCATCACTGGCCCCAGCTATGAGGCTTTGGCATCCGAGGGCATCCAGCTCAACATGGGGGGCGGAGATGTGGAGGAGGTCACCTGCACTGTCATAGAGGGCGTGGCTTACAACCAAATGTGCCAGTCAGTGGCAGACTTTAAGACAACAGAGGAAGACTCCATCACAGGCCTCAGTGACAAGGAGCTGCTCCAGCCCAGTGTTGAGTCTCATGACTTGGAGCCCACCTGTGAAAGGGAGCTACAGAGGGGCCTAAGCAGATGTAGAAGGAGCAGACGAGGTCCTGTCATCGAGGCAGACGGAATGCTCAAGATGTTCCACTGTCCGTATGAAGGCTGTAGTCAAGTCTATGTAGCCATCAGCAGCTTTCAGAACCATGTGAATCTGGTTcacaggaaggggaggaccaaggTGTGTCCCCACCCCGGCTGTGGCAAGAAGTTCTATCTGTCAAACCACCTGCATCGCCACATGATCATCCACTCAGGAGTCCGAGACTTCATCTGTGAAACGTGTGGGAAATCGTTCAAAAGGAAGAATCACTTGGAGGTTCACCGGCGCACGCACACAGGAGAGACGCCCCTTCAGTGTGAGATCTGTGGGTACCAGTGTCGCCAGCGAGCATCTCTCAATTGGCACATGAAGAAACACACCCCCGAGGCCCACTACAACTTCACCTGCGAACACTGTGGCAAGAGGTTTGAAAAGCTTGACAGTGTTAAGTTCCACAAGTTAAAAAGCCACCCAGACAAACAGGCAACATAAGGTGCAGTGTTGCTGGAATGTGCACTAAATATCAACTGGTCAGGGTCAGACCAGAAAGGGACTGAATCTGTTGACACAAAGAACAAGAGAAGAAGAGTGCCCATAGAGGCGGGTATGCCTTTTTGGGGAAAGAGCAGCTCTTTTGAATGAACACTCTTAAGGACATTGCTTAGACTCTGCTCTTGGACTTTAGACTCTGCTCTTGGACTTTAGACCCTGCTCTCAAAGCTGTGCTGGACACAGCCTTTTTAGAGCTCACAGAGACAGCCTAGCTGTTGATATAGTACATTTCAGCACAGTTGTTTACATAATGTGCTGTATGcctctaaaccatactgtctatacCATATTATTAACATATCCATGGATTCTTTTTTTATTCACTTTTATACACTTGTCATccacagttgtaatgtacttgtTGGAAAAAAGTATGTTATTTTTGTTAATGCTTGTGTTCTCATGTCAATACATGTACATGAACTGATGCCTGCTGGTAAAATGCCAAAACTAACATAACTTACATATTCATGGGGAAATGATAATTACATCTTGAGTAGTAATTGTAACAATGTGCATATGGATGTAAAGGACATGTCAATGGATTCAGAAAGAAGAGTTGTATTGTCACACAAGTGGGCTGCCTAGATTGAAATAGAGAATTGGTCATTTTTGTCGTTGACCTGACCAAGGAGTAGTCTTTGTGTGAAAGTCTTGCATCATCTTTCAGGTCTGTCTGTTGTGCTGTGTGTCTATGAACAGAGTGATGTTGTCTTGTGGTTCTAAAATGGCAAATGTAGTTTTTGAAAACCTTTTTTTTTGTAAAGTTCCAAAGCAGAATCTCTAATTTATAGTTATGTTCTTTTCCTGTATCACTGAAATTATCTATGTGAATATGACCTAAATAGATTCTGTACATATTTCTGGAAGATACATTTGTTTGAgacaaatgtaaaataaaaaaaggagTACTGTA
>XM_021625040.2
GTGGTGTCACTTCCTGTAAGACAACTTCCGCTAGGAATGACAACAACAGACAGCTGTTGTCAAGATGGCGGATGgctatggaggagaggagggtccgCTGGACGCTGAAGAACCCGGGgatcaaataaaatcaatttcGAGGCGTTGTAGAGGCCGTCCCAGGCTCACGGATTCTGACCGAGCACAAAGACGCCTCGAGTCCCGCAAGAAGTATGATGTTAGGCGAGTTTATCTTGGAGAATCTCACAAGGTTTGGAGTGAGCTTCGCCGGCGAACGAGTTTGAGTGACGCTGGACTTGCCGAGTACCTAATCCTGCTCAACTCCACGTACGGGGAGATATACCGGCAAAAATACGGAGGGAAGACAACCCCAGAAGTATGTACAAAACTGAAAATAGGGAAAAATGAGAGAGTGTCTAGCCTTTGTAGCATAGTGACCTGGTACCAGGATCACTCCCAGACCTGTCCACATGAACCGCAGCTCAGAGCTCTGGAACCACAACCTGGATTCTCCACCTCTGCTATCTGGCAGTGTGATGCTGACCATTCATTTGTGCAGCACCTCTCCTCGCCACCAAGAGGGGCCAGTGAGcttgagatggagacagagatggaggaggaagttGACAGGGACACAAGGACAGAGGAAACTGGAGGAATCATgaccaggtggaggaggagagagacagatgcccACAGACAGCTCACTGATGCAGGAGGGGATTTGGAAGTGGCCGGAGCCCCGGTGACTATGGATCAGGTGGAGGAGGCCACGGCTCTCAGCCAGCTCCCAGGGATGGAGGCCCCATCCAGGGACACTCCACTGATGGAGCATCTCTCTGAGAATCAGTCTGTCTGGGAGAtggaggtggtgatggaggcaggcAGACAGCAAGCCCAGGAGTCTGacgaggaggagacaggttacaaTGCTGTAGGGGAGGACATCAACCcagaggaggaggcggaggacctgagaagagacaggggagatgaaGGAGTGGGTACATCACAAGATGGCTACGAGtgtgttgtagtgactgcatCCTTAACTGACAGACTGGACAAAGCCGATGAGGAGGACACCACACAGACATTGGGTGACACAGTTGGTGTAGACACTCAGACCAACctccatccagtcccagcctctATGCAGGTGCCTGGGCAAGGGGAACTATTTGATTCTCAGACACTACAGACTGTGGGGACCACCTGTGAGATACCAGACCAGCGAGGAACTCTGGACGGTTCtcagCTGATCATCATCACTGGCCCCAGCTATGAGGCTTTGGCATCCGAGGGCATCCAGCTCAACATGGGGGGCGGAGATGTGGAGGAGGTCACCTGCACTGTCATAGAGGGCGTGGCTTACAACCAAATGTGCCAGTCAGTGGCAGACTTTAAGACAACAGAGGAAGACTCCATCACAGATATTTTTCTCTCAGGCCTCAGTGACAAGGAGCTGCTCCAGCCCAGTGTTGAGTCTCATGACTTGGAGCCCACCTGTGAAAGGGAGCTACAGAGGGGCCTAAGCAGATGTAGAAGGAGCAGACGAGGTCCTGTCATCGAGGCAGACGGAATGCTCAAGATGTTCCACTGTCCGTATGAAGGCTGTAGTCAAGTCTATGTAGCCATCAGCAGCTTTCAGAACCATGTGAATCTGGTTcacaggaaggggaggaccaaggTGTGTCCCCACCCCGGCTGTGGCAAGAAGTTCTATCTGTCAAACCACCTGCATCGCCACATGATCATCCACTCAGGAGTCCGAGACTTCATCTGTGAAACGTGTGGGAAATCGTTCAAAAGGAAGAATCACTTGGAGGTTCACCGGCGCACGCACACAGGAGAGACGCCCCTTCAGTGTGAGATCTGTGGGTACCAGTGTCGCCAGCGAGCATCTCTCAATTGGCACATGAAGAAACACACCCCCGAGGCCCACTACAACTTCACCTGCGAACACTGTGGCAAGAGGTTTGAAAAGCTTGACAGTGTTAAGTTCCACAAGTTAAAAAGCCACCCAGACAAACAGGCAACATAAGGTGCAGTGTTGCTGGAATGTGCACTAAATATCAACTGGTCAGGGTCAGACCAGAAAGGGACTGAATCTGTTGACACAAAGAACAAGAGAAGAAGAGTGCCCATAGAGGCGGGTATGCCTTTTTGGGGAAAGAGCAGCTCTTTTGAATGAACACTCTTAAGGACATTGCTTAGACTCTGCTCTTGGACTTTAGACTCTGCTCTTGGACTTTAGACCCTGCTCTCAAAGCTGTGCTGGACACAGCCTTTTTAGAGCTCACAGAGACAGCCTAGCTGTTGATATAGTACATTTCAGCACAGTTGTTTACATAATGTGCTGTATGcctctaaaccatactgtctatacCATATTATTAACATATCCATGGATTCTTTTTTTATTCACTTTTATACACTTGTCATccacagttgtaatgtacttgtTGGAAAAAAGTATGTTATTTTTGTTAATGCTTGTGTTCTCATGTCAATACATGTACATGAACTGATGCCTGCTGGTAAAATGCCAAAACTAACATAACTTACATATTCATGGGGAAATGATAATTACATCTTGAGTAGTAATTGTAACAATGTGCATATGGATGTAAAGGACATGTCAATGGATTCAGAAAGAAGAGTTGTATTGTCACACAAGTGGGCTGCCTAGATTGAAATAGAGAATTGGTCATTTTTGTCGTTGACCTGACCAAGGAGTAGTCTTTGTGTGAAAGTCTTGCATCATCTTTCAGGTCTGTCTGTTGTGCTGTGTGTCTATGAACAGAGTGATGTTGTCTTGTGGTTCTAAAATGGCAAATGTAGTTTTTGAAAACCTTTTTTTTTGTAAAGTTCCAAAGCAGAATCTCTAATTTATAGTTATGTTCTTTTCCTGTATCACTGAAATTATCTATGTGAATATGACCTAAATAGATTCTGTACATATTTCTGGAAGATACATTTGTTTGAgacaaatgtaaaataaaaaaaggagTACTGTA

Function

NR:

description
zinc finger protein 653-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625041.2 False 3004 mRNA 0.48 10 76777014 76782019
XM_021625040.2 True 3020 mRNA 0.48 10 76777014 76782020
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110538310 LOC106601366 coding downstream 1268 76759721 ~ 76775746 (-)
LOC110539169 LOC107548868 coding downstream 17542 76758252 ~ 76759472 (-)
LOC110538311 tsn16 coding downstream 19087 76749264 ~ 76757927 (-)
LOC110538312 LOC106601368 coding downstream 29275 76734597 ~ 76747739 (-)
nfixa LOC106601192 coding downstream 73616 76574288 ~ 76703398 (-)
LOC110538308 epor coding upstream 4277 76786296 ~ 76793231 (-)
rab3a rab3a coding upstream 12159 76794179 ~ 76804653 (-)
LOC110538305 LOC106596625 coding upstream 24947 76806967 ~ 76809411 (-)
LOC110538304 cnn1 coding upstream 33246 76815266 ~ 76824161 (-)
LOC110538302 LOC106601359 coding upstream 46740 76828760 ~ 76844798 (-)
G1113184 NA non-coding downstream 45727 76730896 ~ 76731287 (-)
G1113104 NA non-coding downstream 140718 76586533 ~ 76636296 (-)
G1113130 NA non-coding downstream 146105 76630424 ~ 76630909 (-)
G1113005 NA non-coding downstream 306769 76388951 ~ 76470245 (-)
G1112992 NA non-coding downstream 399845 76376651 ~ 76377169 (-)
G1113198 NA non-coding upstream 2660 76784680 ~ 76784922 (-)
G1113216 NA non-coding upstream 63345 76845365 ~ 76867660 (-)
G1113467 NA non-coding upstream 144941 76926961 ~ 76927473 (-)
G1113483 NA non-coding upstream 187838 76969858 ~ 76971934 (-)
G1113043 LOC106601201 other downstream 291729 76484372 ~ 76485285 (-)
LOC110538323 NA other downstream 343444 76428548 ~ 76478939 (-)
G1113013 NA other downstream 362803 76412940 ~ 76414211 (-)
G1112997 NA other downstream 395287 76380928 ~ 76381727 (-)
G1112697 LOC106607147 other downstream 980216 75796450 ~ 75796798 (-)
G1114604 LOC106607027 other upstream 700091 77482111 ~ 77484731 (-)
LOC110538477 LOC106607035 other upstream 828825 77610820 ~ 77612826 (-)
G1114714 NA other upstream 912475 77694495 ~ 77695275 (-)
LOC110539174 prdx2 other upstream 922487 77704482 ~ 77719934 (-)

Expression

LOC110538309(LOC106601361) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
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LOC110538309(LOC106601361) Expression in each Bioproject

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LOC110538309(LOC106601361) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network