LOC110538299 (LOC106601357)


Basic Information

Item Value
gene id LOC110538299
gene name LOC106601357
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 76968770 ~ 76972089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625026.2
gagagagcagggagagagagtacagactgTCGAGGTGGAAGAgaaagagcagggagagagagtacagactgtcgaggtggaagagagagagcagggagagagagtacagactgTCGAGGTGGAAGAGAGGGCAGCGGTAAGTGAGGAAGACACAGAGATTCCAGAGAAAGAACATATTGAAACAGTGGCAGGAGAGAAAGCGGAGGAGGTCCAGTCTCGTCCTTCTGCCCAGCTCAGTGTCCAGCCTATGGTCAGGATTGAGATGGAATGCAGTGACGATGACCAGAGTGACAGCGGGGTGTCCACTGACTTCTCCCCTGTCAGCACACACGAGATCCACACGACCACAGCCCCCATCATGGACAACAAGGCTCCCCCACCCCAGAAGGAGACTCCCATCGAGAGGGAGATCCGGCGATCTGCTGAAAGGGAGCAGAGCCTGCGTCAGTCCAGGTGCATGTCAAACACCCAGGAAGGTCAGGAGGTGGTAGACATCCCCCTGATGAAGACTCCGCTGCTGGCTAAGACACTGTCCTCTAAGGCAGGGCCGGGGCAGGGTGCTGACTGGCAGTTCTCAGAGAAGAAGATGCAGAAGGAGATCAGCCAGGAGATCCATAGGGAGCTTGTCCTGGTGAACATGGGGAAGATCCCTGGAGTCTACAGCAAGGGAACAGTACGCCAGATGAGGGAGAGGAAGCTGCTGTTTGAAGCCTTCCAACAAGGCAATGCAGAAGGACCCACCAGGCACAGGAGACCCCTCACCACAGCAGGCCTGGGGATGAGAGGTCATGTCTACCCCTCTGTGCTGGAGAGGACGCGTAGCATGGAGCTTGTCTCTTTCAAAGGCTGCCCTCTCTCAAGAGCCCACTCCCATCAGCTGTTTGACTTAAAGGACAAAAAGGAGGCTAGCTCAGGCCAAAACCCAAGTGCAGAGAACCAACCCGCCGCTAAAGGAGCAGAGAGGAAGGTGGTTATTCTGGAAAGTGACGACACAATCATAGCCCACTATCCGAACCGAGACAGAGGAGCTCAACGCCTCTACAGAAGCCTAGACTGCCTAAATATAGGGGGCACTGTCTCTACAGAGGAGGAGGCTACGGATGAGGTGAGGGTAGAACAGCCAGGGGATGAGGACGACATCCTCAGGGAGAACCCCTTCTTTAAGCTGCGTCCCTCACTGGCCATGAAGCCGGAGGTGGAAAGGGACATCCGggaagccagggagagagaggaggagctgcGCAGGCAGAGGTGTAGTCTGTACGGAGAGGCAGGAGTCGGTGGGGGCAGGCCAGACGGCACAGAGGACCCCAGCCCAGACTCACCTACCACACGCATTCCCTCATCCACCTCCTCTTTCACAGCATCAGTTGATGGCCGACAATCCAAGGGGAAGTTGGATCGGACCTGGCCTCCTCCCAATCCTAAGAGTGCTAGGGTGAACCCTGGACAAACACAGGAGCCCAAGGTTTACAAGGCAGGCGGCCAGAAAACTCCTCTGTGGCAGCGTTGGGAGGCAGGTATGGTGAACAGGCCACTGCCACGGGAACAGGACTGATACTGGAGGTCACCATTACCAGGACTTCTATAAGATTAGCGTTTCAAATGTATAACTAAGGAACTGGGATGGTAGAACTGCATAATTCACTACGATGGCAGAAACTTGAATTAGTATTAGCTTGAACATTCCATGCTTTGTAAGACTAAAATCTGTTTTGTATATAACATTACAATTTCATTACAAATATTCACAATGTACAAAAGACGTCCTCTCTCATTTAACTGCTCTGCTTGTAAAGGTTTAACTACTGTTCAGTGTTCGATCAAAATGACAAATGTCACACACAATTCAGAGAAATGTCATTATCAAGGACTGCATAAATGTGAAGGTAATCAAAACTACTATAAATGTTTCAGTAAACGCACAAATGCCGTAATCATATCTCAGTCCGTACATATCTCAGTCCGTACATATCTCAGTCCGTACATATCTCAGTCCGTACATATCTCAGTTTTGTCCCATCAGGCTCTGCTTATCAGTATTGTACATTTTGTTAATACAATCCAGTGAGGAGAAATGAAGTGCATACATTAAATATC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106601357

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625026.2 True 2100 mRNA 0.51 3 76968770 76972089

Neighbor

gene id symbol gene type direction distance location
LOC110538300 LOC106607082 coding upstream 3613 76951277 ~ 76965157 (+)
LOC118936312 LOC106589640 coding upstream 154046 76812258 ~ 76815056 (+)
LOC110538307 LOC106607087 coding upstream 156902 76809448 ~ 76811868 (+)
LOC110538313 LOC106601291 coding upstream 236654 76730857 ~ 76732118 (+)
LOC110538316 LOC106601193 coding upstream 394862 76566094 ~ 76573908 (+)
LOC110538297 LOC106601356 coding downstream 19831 76991920 ~ 76996271 (+)
nfil3-2 LOC106607079 coding downstream 28871 77000960 ~ 77012928 (+)
LOC118937747 NA coding downstream 98783 77070872 ~ 77078590 (+)
LOC110538293 LOC106601351 coding downstream 139955 77112044 ~ 77120816 (+)
LOC110538287 LOC106601346 coding downstream 326416 77298505 ~ 77301052 (+)
G1113284 NA non-coding upstream 41647 76926756 ~ 76927123 (+)
G1113247 NA non-coding upstream 89018 76875912 ~ 76879752 (+)
G1113244 NA non-coding upstream 95178 76873365 ~ 76873592 (+)
G1112464 LOC106601359 non-coding upstream 136401 76828740 ~ 76832369 (+)
G1113270 NA non-coding downstream 4245 76976334 ~ 76978898 (+)
G1113381 NA non-coding downstream 138718 77110807 ~ 77111076 (+)
G1113407 LOC106601347 non-coding downstream 195302 77167391 ~ 77171690 (+)
G1113639 NA non-coding downstream 249272 77221361 ~ 77221625 (+)
G1113647 NA non-coding downstream 255886 77227975 ~ 77228653 (+)
LOC100136171 LOC100136171 other upstream 498543 76464742 ~ 76470326 (+)
G1112082 NA other upstream 668243 76300060 ~ 76300527 (+)
G1112079 NA other upstream 680268 76287598 ~ 76288502 (+)
G1111968 LOC106601158 other upstream 1072897 75895612 ~ 75895873 (+)
G1113861 LOC100136012 other downstream 619632 77591721 ~ 77624996 (+)
G1113968 NA other downstream 802129 77774218 ~ 77819621 (+)
LOC110538485 smarca4 other downstream 873428 77845399 ~ 77864078 (+)
LOC110486564 LOC106601427 other downstream 2077916 79049969 ~ 79053051 (+)
G1115550 LOC106601417 other downstream 2102577 79074666 ~ 79077216 (+)

Expression


Co-expression Network