LOC110538297 (LOC106601356)


Basic Information

Item Value
gene id LOC110538297
gene name LOC106601356
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 76991920 ~ 76996271 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625025.2
TCCAGAcatctacagttttttttttttttttaggaatgtCTCCTTTATAATGAGAATGGATTCAGTCAAATGCTTACATAATGACTGCTGGCATTTTCTTTCTCAATTCTATTCCAACAACTCTGATCTATCACTCACTTTGACGTGAAACCGAGCATGCCGTCCCTAAAGCTGATGTTTGGTTGAAGATCATAGGTCTATTGGAAATCTgcagggggagtgagagggagcCAGAGTTGGCAATATTACTTAATTGTTACGAAAGGATGGGCTAGCGAGTTCAGTTGATGATGCATGAGCAGGATAACGTTATGTGAGCTTTCCTTTGCCAGGACAGGGGTGGGTCTTGGCATGGAGAGAGGCGGTCTCAGTGAGCGCACCACACATATGCGGCCCATTGGTTCAAGTGAGGATAGGAAACGTCCTCCGCTGAACTTCACCGGGAAAGAAACCAATAGGAGCTGCAGCAATCCAAGTGGAGCAGAAACGCGAGACACAAGGTGTCAGAGAGACTAGTAGCCTAATATTGAGTAGGCTAACAGTAGCCTACACCGTGCAGGAAACAAAGTATCCTGTGTATTCGATGACCCAGTGCTGAATCGAAGCTGCTGAATTATTATGATCGCTCTGTTACATTGTGACACGTTTCTTTAATTGAAAGATCGGTGCTTTTCTGAGACAACGAGACTCCAACTCAAGGTGGGGGTATTGAAACAATTTACCGCCATACCATTCCACGACACTGGATTTTGAGACACTATCTGAAGAACAGTAAATCTCAACACAGCAAAACCATGAGTGTGACCAGTGAGATGTTTGAAGAAGATTCTCAAGACATGAGGGAGCAGAGCGGTGGAGAGTCCAGTTCTACACCTGGTGGGACCCTGTCCTTCACAGACGAGGCCGTGTCCATCCTGACCTCCAGCAGCCTGCTGGCCCGCTCTCTGCTCGGACGCACCTCTGCTCTGAAGCGCACCAATGATCCGCCCGCCTCTGGGAACCCCCTCAGACGGAAGCGTGAGTTCATACCCAGTGAGAAGAAGGATGACGGCTATTGGGACAAGCGCAAGAAGAACAACGAGGCGGCCAAGCGCTCCAGGGAGAAGCGCCGCGTCAACGACATGGTGGTGGAGAATCGCGTGCTGGCACTGCTGGAGGAGAACGCACGTCTCAGGGCCGAGCTGCTGGCTCTCAAGTTCCGCTTCGGCCTGGTCAAAGATCCCTCCAACACACCCATCCTGCCCCTCCCTGCAGCCCCCTGTGCTCCACAGACCTTGGCTCCACACTACTATCTGAACAGTGGACCAGGGAGCCACCCTGCTGCCCCCGGGGGCCAGTTCAGCATGCAAGGCTCCAGGGACGCTGGCAGCATGTCAGAGGACTCTGGGTTCTCCACCCCTGGCAGCTCCAGTTTAGGGAGCCCCCTCTCCTTTGAGGACCGACTGAGTGATCATGGCAAACTGTCCCCACACAGAGCAGAGGAGCTGGGCTACGAGCTACACCACTCCCCTGCAGAGGCCCAGGTGCACCACAGTGGACACTTCCCTGGGGAGCTCTCCAGAGTGATAATGGGGAAAGTGGAGTCTGGGGAGGGCATAAAGAACTTTCCTCACAAAATGCGCTTCAAGATCCTCAGCAGTGGAGAGGACAACAGGCACAGCCCCACACAGTCAATGGGAGCAAGAGACGGTCCCCGGGAGGCAGTCAACGGACACATCATGTTGGGTGGAGCTGAGGGGGCAGGAGTCTGGCCACATAagcaggagggagaggagacccggagGGGGCGACAACAGCAAGAGTCCACTCAGTATGGCCAACCTACACCCCTACAGGGCCAGACAGAGTCTCATTATTATACAGAGAACAATGTCCTCAAGTCCCACCTCAGCTCCCTCAGTGAAGAGGTGGCCCAGCTCAAGAAGCTGTTCTCAGAGCAGCTGCTGGCTAAAGTGAACTGAGCCCAGGACTGGGTCAGTGGATGCTCGGTAAACTGTCCCATCCCAGAAGAGGAAGCTCAATCTGAGCTAGCATACTAACTtaacataagcacacacacatggtGAAAATGAGATAGAGGGAAACAGAGACTCTAAACACAACAGTACCTTGGCACGCTGAGCTGCTACAGTGGCAAACCAATGCCCTGGGCCAACTGGACTATGATCCACCCCATATCCTCAATTCAAACTATTTACCTTTATAtttatgagtgtgtgtatttTTACCCTCTAATTTTGAGTTGTCCTGATTTTCTTCTCCTAAATCCTAAACTCCTAGACTCCTTATCTGCGCCTCAATTGAGAACAGTTTCTGTAACAAGTCCCATCATCACCTTATGAAAGCACAAAGCTATAGGTGTTGGTTAACTTGTGGCCCTCTGCCCCACACACTGTGAGACCCTCAAAAACACTCTGACACAAGAGAACACTGCCTCACCTCTCCAGAGGATGCTGTACTATTGACAGTCATCTCCACTCTGCATGTACAACAATGCTGCTTCTCAAGGCCACAGAAAAGCAATGTCAGTGATTGAGACATTGAGGTGAACTGGTGCTGAACTAATGTACACTGTAATTCAACTGGAGCTTCAACAAACTCATTATTAGTGCTGTGGCATTGGCACTAATTGGTTTTGAATATGCATGAGGAAAGAACACCACATTCTTTTAAACTGTAAACACAACCATAGAAAGGGCACTGAGGACAGATAACCTGAAAGGTGACGGTCTCCAGTCCCTGAATGAGGACTTTCAACTATTGGCATCTCTTTAATGTATTGCAACACAATGGACTTTGGATGATGACAATTGGAAATCAACTAATACTCTATCATTCCATTGCACAGTCAACAGCATAGCTGtgaggacagacacacaccatgtcAATCGTTGAAATGTGATATGCTTCATGTAGGACAACACACTGTGTCTGGCAACTAGTGAAAGTGTTTTCATGTCTCAGTTGAATACTGTTTGTTAGCCTTGTCCAAAGAGTACATGGTCTGTGTAATTACtcgacatgcactgtaaactgtatCTAAGTGATGAAAATATTTGTTGTTCTGTGAATATCTGtatgaaaatacatttttgtactCGTGAATAAATCTTTGAAATTAAA

Function

NR:

description
uncharacterized protein LOC110538297

GO: NA

KEGG:

id description
K12114 VRI; vrille

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625025.2 True 3123 mRNA 0.49 2 76991920 76996271

Neighbor

gene id symbol gene type direction distance location
LOC110538299 LOC106601357 coding upstream 19831 76968770 ~ 76972089 (+)
LOC110538300 LOC106607082 coding upstream 26763 76951277 ~ 76965157 (+)
LOC118936312 LOC106589640 coding upstream 177196 76812258 ~ 76815056 (+)
LOC110538307 LOC106607087 coding upstream 180052 76809448 ~ 76811868 (+)
LOC110538313 LOC106601291 coding upstream 259804 76730857 ~ 76732118 (+)
nfil3-2 LOC106607079 coding downstream 4689 77000960 ~ 77012928 (+)
LOC118937747 NA coding downstream 74601 77070872 ~ 77078590 (+)
LOC110538293 LOC106601351 coding downstream 115773 77112044 ~ 77120816 (+)
LOC110538287 LOC106601346 coding downstream 302234 77298505 ~ 77301052 (+)
LOC110538285 LOC106601344 coding downstream 304939 77301210 ~ 77315227 (+)
G1113270 NA non-coding upstream 13022 76976334 ~ 76978898 (+)
G1113284 NA non-coding upstream 64797 76926756 ~ 76927123 (+)
G1113247 NA non-coding upstream 112168 76875912 ~ 76879752 (+)
G1113244 NA non-coding upstream 118328 76873365 ~ 76873592 (+)
G1112464 LOC106601359 non-coding upstream 159551 76828740 ~ 76832369 (+)
G1113381 NA non-coding downstream 114536 77110807 ~ 77111076 (+)
G1113407 LOC106601347 non-coding downstream 171120 77167391 ~ 77171690 (+)
G1113639 NA non-coding downstream 225090 77221361 ~ 77221625 (+)
G1113647 NA non-coding downstream 231704 77227975 ~ 77228653 (+)
LOC110538283 LOC106607024 non-coding downstream 366824 77363072 ~ 77420925 (+)
LOC100136171 LOC100136171 other upstream 521693 76464742 ~ 76470326 (+)
G1112082 NA other upstream 691393 76300060 ~ 76300527 (+)
G1112079 NA other upstream 703418 76287598 ~ 76288502 (+)
G1111968 LOC106601158 other upstream 1096047 75895612 ~ 75895873 (+)
G1113861 LOC100136012 other downstream 595450 77591721 ~ 77624996 (+)
G1113968 NA other downstream 777947 77774218 ~ 77819621 (+)
LOC110538485 smarca4 other downstream 849246 77845399 ~ 77864078 (+)
LOC110486564 LOC106601427 other downstream 2053734 79049969 ~ 79053051 (+)
G1115550 LOC106601417 other downstream 2078395 79074666 ~ 79077216 (+)

Expression


Co-expression Network