nfil3-2 (LOC106607079)


Basic Information

Item Value
gene id nfil3-2
gene name LOC106607079
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 77000960 ~ 77012928 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625023.2
AAGGGGAGGGGGCAGATACGGAGCGCGCGAGCGAGAAACAAAACGTGACTAGGCACCCAAAGACTTCTGTTATGCAACTACTGACCTACTAACATACAATTGGAGACATtgagagagcgaggaggaaatTGTAGCACGTCTCTAACGTAATAAGAGAACATATTCAAAATAAGCGACACAGAATTCATGCTCACATACAGGCACTAATCACAGAGCTCGCACTGTACTTGAAGGACGATCGCACATTTGAATTCGATAGTAGTCGGAAATAGGAATTGTTGAACAGAAGCGTGGATGTTATATTAGACTTCGCACGGTGGGCTTTTATTTACACATACAAGCCTTTCATCTTGCAACCTACTGGAGAAGGAGAGGTAGCGCCGCTCCCAAGAGACTGACAAGCCGAGATAGACTGAGTGACCTACATCCTGCAACACGCCTGGAGCAGTAGAGCACTTCTCTGTCTGCTCAGCACAGCGCTCTCGCAAAAATATTGAAAAACAAAACAGAGAAAAGGTTAGAGAATTGCTCGGTGAAGCTTGTCACATTCTCCACTCCAGgaactcttttttttcttctctacaAAGCAGCTTTGACCCACTTTTCTGTGAGAAAGCTGAAGAGACTTGCCTAGAGAAAGGCTGAACATACATTGGATAAATGAGGGGAATTAACGCAGAGTTCCACCGTTTCTTGATCTTCTTGGCCAGTTTAGACACTTGAACTATAAGCTCATTCAATCAGTGAGATATAGCTGAATCCCACTGTTCCTTATCACCCCATTCCTTGAGTTTCCTTTCCAGTGGTTGTAGCAATATTCCAAACTTTCCTCCACTGTGCAACAATGGAATGCCTGAATTCACAACTCCAATCAGCAAGCTCAGAAAATAACCTGGACAGCCTAGAGACATACTCTAACTACGAAGAGTCTCTCCCATCGCCTCAAGGAACCCCCTCTCGCCAGGGGCGTCTCGTCAAGCCCAGCATGAATTGCAGACGCAAGCGTGAGTTCATCTCTGATGAAAAGAAGGATGCATCCTATTGGGAGAAGCGCCGTAAGAACAACGAGGCGGCCAAACGCTCCAGGGAGAAGCGACGACTGAACGACATGGTGTTGGAAAACCGCGTCATGGTGCTGAATGACGAGAACTGCCGCCTGAAGACGGAGCTGCTGCAGCTGAAGCTGCGCTTTGGCCTTATCAGCACTGCCTCCTACATGGAGAAGAGCCAGCAGCTCACTAGTGGAGGCAACAATGGAGGCAACGGGAGATCCTCCACATCCAATTACTACTCCAGCGGCTACTCCAGCAGCTCCCAGGTGATGATGAACTCTGACTCCTCGGAGACTGAGCAGTCAGGCAGCGGGGGGGGGCATAATCAACTGGTGGCGTACTCCCCCCATGGGTCCCTTTCAGACATGTCAGACGGGTCCTCCCGGGACAGCCCAGAGCCTGCGGTCTACGCGATCAAGCAGGAGGAAAGCAGCCTGGAGATGGACATTGAAAGCAGCATGTTGAATGTCCACCATAGCCTGTCCTCCACACATCACCAGGAGGTGATGGAGTCGGTCTACCACAGCCAACAGCAccactcctaccaccaccaggagAGCATCACAAGCCAGACCAGTCAGGTCCCTCCACCCACCCAACAGAGGAGTGTCATCCTCTACCGCTCCAGTAGTGCCTCCTACCCTGGGGAGAGCCAAAGGCAGCAGGACATAGACCAACAGACAGCCCAACAGCAGAGTTCTCAGGCCAGCCATCTGGCCCAGGCTCGAGAGAGCCACACAGAGAGCTCAGAGAGACTGGCAGAGGTGACCAAGCAGATGGAGAGGAAGACACTAGACTCCCCTCCGTACCACTACTCAGACTGCCACAGCGAGGCAGGAGAAGGGCAGGTGTACAGAGCTCTGCAACAGGAGCAAAAGACCCAGACGGGCCTCGCTCCAGACATCCTCCAAAAACAGGAGGCCGTCACGTCCCACCTGTACCACAACCAGGCTAGTCACTGCTATCTTAGCACCCAGGACGAGGAGCCCCCCATACTGACCTATGAGGGCGGGGCCAGGAGTGAGGGGTACTACCAAGAACACTCAACCTCAGGCAAAGACACCTCCTCTAGTGACAATGACCCCCGCAGCTCTGACAAGGATGCCTCCACGGACGACGAGTCCCCGTCTTCCTCCTTCTCTGACGCCGGGAGTTACCTCCAGCACCTGTCTGTCTCACACCAGCCAGGGTCCCCTCTGCCCTCCCCGCAGGGCTCCTCCCAATGCCAAAGCGGGGACACCCAGGCAGAGGTTAAGGGCACTGCCCTGCCTCACAAACTGCGTCTCAAACACAAAGCCATGAGCACCCAGCAGAACTctcccaccacccctcctccttcctctatcCTACCCCTGCCCCAGCACCCTTACCTGGCCCTCATGCAGCAGCAGATcggcaaagagagggagagtgagcgcCAGCCCCCCACAGGGTTCTATAAGCAGCCGTCCTCAGCTGAGTCaaggaaggagagtgagagaaaggagtCGTCAAGCGGACGCCATAACAACAGCCGAGACTAAGTGCCTATAGAACACTTGAGGGCAACACAAATTTGTTGAGGTTCCTTACATTGTGAGGTGTCTCTGATGTTGCCTTAGATCAAAATACGCTctttccctttcccctcctcaATCTCAATCCACTATCGTCCCTTTACCCCCATCTACACCACCTTCATGTCCTGGGACTAAAAAGCTGTACTGAAGCCCAAAACAGGGCTGGACTTCTGGGGGAACAGTATTCTAtgtgtatatattgtatatacaCTTTTCAGTTCTTGCATCTTCTCCATAATTACAGAAGGACTTTTGTTTAtaaatgagaggagggaggaaactCTTTCATATCATTTTTCGTCAAACCACAGTTGGTCATTTCAAATGAGAATATAAGTTGACCATTATCGGAACTATACTGTCAGCTTTCATTGCCCCTCCTATGGTGCACATCTGGCTTTAGACAAACATAGCAGCAACATTCTGGGAACATTCTTGACCAAAGATGCAACAAAATGAGAAATTCCATCCCTCTTCCCTAACCCTACCAATCCATATATCCCTTCCCATCTCCATGATCTCAcacagcccatccattatctttCTTGTTCAAGCACTTGGTTTGTATATTACTGTAAATAATACACAataatttataaatatatatttttgaataaaacaaacaaaaatgtcacAACAATGTGACAAACTGTTGAGGCAAGAAAGGACTTGGACATTATCATCCTGTTTTTGTCAGAATTACTGTACAGTCACATTGTGTCTACTGTTGCAAACTCCACTTAAGTTAAAACGTCTTTAATGTCATCACTTTAACTCTGTTTGCAGAAACATGGCCGATAGCTTTTGAAATGCAGCTTCCCTGTTATTGCAGTAGATCTTTAAGATCTTAGACAGCATTCAATCAAAGTCAATCTGAGACAGAACTAGGCTGCTGGCCTAAAGTTGAGCATCATCAACAGTCTAGACTTCCACTGTTCCCATCTCTTAGCCCAATGTATTTATTCCTATGCCCACATCTGCAGAAAAGCCAATAGGAACATAGACTAAAATATGAATGTGTATAAACTTTAAGGTATAAAAGCTCAAGTTAAAACCGTAAAGTGGGGACATATAGGGGAGAGAGTTATTTTAAATATAGTAATATCATCTAAATGATATCTGTATGATATTTGAACTCTGAGTGAGGCCACCTAGTCTCCTCTGCAAATCAACACAATGCACTGAGCTCAGAACCTCAGGCTTCTAACCTGATGTCGATCCATGTGCGCTAGACACACGGAGTTAAACTCAGAAACTAGGTAATTGGATCTCTGAAACAGAGGCTAATTTACTATATTACACAAATAGCCCATGACGTTATAAAAACCTGGTTTAGAATAAGAGCTATTGCAATTAAGTTTTGTAAAAACCAAGGACAATCTCTACTTTGTTAATAAAATAGGGATTTCCCCTTTTTCTAATGTGCCTCTGTAGTGTAATACATGGGGCATCCACCCCCGGCCTTTATTTTCCTTGTTTTGGGTGACAATGAGAAGCCTGCACTGTACCACACAGTTTATAAAGTATATGTGCCATGTTTAGCTTTTTGCCACTTGTGTATAAATGTAAAGCTTTCACTCTCTGACAacactgtaatgttaatgtcatTGTTTTATTTTCTGAAGTGTTGTTCTGTTACTATCTTCGTGTGTCTTTCTCCTATAGACCGTGATGATGTATTTGCTCCATACCCCCATCCTCCCTTTTGTCAATGTGTTTTAAATCAGTGATGCTTGTGTTTTTGCTGATGGTTTTATGAAAAAGATTCAAGAAGGACAAAAAAGATGCAGACGAGACTAGTGTGGTGTTTAGCAGTAGGTGGTGTCTAGGTCGCCACCACCCCTTTTTGACATGGCTGTGTATGTAAAGACACTAATATTTATCATGGAAGATGGATGCATTTCAAGATTGAAAACAATAAAAAGGTTGTTGAATTTCTCAACATATCGTACAAA
>XM_036938539.1
TAAGGCTTTGAGTCCATGGGAGGCAACTGGAAAAAATTCCCTGTCGGTCTACACCTGGACTCCGGGTTAGACGTAAAAATGGTCAACTAAATCCAGGACACTTCAATTAGTACGTtgtgtttcgtatgCCTTTCATCTTGCAACCTACTGGAGAAGGAGAGGTAGCGCCGCTCCCAAGAGACTGACAAGCCGAGATAGACTGAGTGACCTACATCCTGCAACACGCCTGGAGCAGTAGAGCACTTCTCTGTCTGCTCAGCACAGCGCTCTCGCAAAAATATTGAAAAACAAAACAGAGAAAAGGTTAGAGAATTGCTCGGTGAAGCTTGTCACATTCTCCACTCCAGgaactcttttttttcttctctacaAAGCAGCTTTGACCCACTTTTCTGTGAGAAAGCTGAAGAGACTTGCCTAGAGAAAGGCTGAACATACATTGGATAAATGAGGGGAATTAACGCAGAGTTCCACCGTTTCTTGATCTTCTTGGCCAGTTTAGACACTTGAACTATAAGCTCATTCAATCAGTGAGATATAGCTGAATCCCACTGTTCCTTATCACCCCATTCCTTGAGTTTCCTTTCCAGTGGTTGTAGCAATATTCCAAACTTTCCTCCACTGTGCAACAATGGAATGCCTGAATTCACAACTCCAATCAGCAAGCTCAGAAAATAACCTGGACAGCCTAGAGACATACTCTAACTACGAAGAGTCTCTCCCATCGCCTCAAGGAACCCCCTCTCGCCAGGGGCGTCTCGTCAAGCCCAGCATGAATTGCAGACGCAAGCGTGAGTTCATCTCTGATGAAAAGAAGGATGCATCCTATTGGGAGAAGCGCCGTAAGAACAACGAGGCGGCCAAACGCTCCAGGGAGAAGCGACGACTGAACGACATGGTGTTGGAAAACCGCGTCATGGTGCTGAATGACGAGAACTGCCGCCTGAAGACGGAGCTGCTGCAGCTGAAGCTGCGCTTTGGCCTTATCAGCACTGCCTCCTACATGGAGAAGAGCCAGCAGCTCACTAGTGGAGGCAACAATGGAGGCAACGGGAGATCCTCCACATCCAATTACTACTCCAGCGGCTACTCCAGCAGCTCCCAGGTGATGATGAACTCTGACTCCTCGGAGACTGAGCAGTCAGGCAGCGGGGGGGGGCATAATCAACTGGTGGCGTACTCCCCCCATGGGTCCCTTTCAGACATGTCAGACGGGTCCTCCCGGGACAGCCCAGAGCCTGCGGTCTACGCGATCAAGCAGGAGGAAAGCAGCCTGGAGATGGACATTGAAAGCAGCATGTTGAATGTCCACCATAGCCTGTCCTCCACACATCACCAGGAGGTGATGGAGTCGGTCTACCACAGCCAACAGCAccactcctaccaccaccaggagAGCATCACAAGCCAGACCAGTCAGGTCCCTCCACCCACCCAACAGAGGAGTGTCATCCTCTACCGCTCCAGTAGTGCCTCCTACCCTGGGGAGAGCCAAAGGCAGCAGGACATAGACCAACAGACAGCCCAACAGCAGAGTTCTCAGGCCAGCCATCTGGCCCAGGCTCGAGAGAGCCACACAGAGAGCTCAGAGAGACTGGCAGAGGTGACCAAGCAGATGGAGAGGAAGACACTAGACTCCCCTCCGTACCACTACTCAGACTGCCACAGCGAGGCAGGAGAAGGGCAGGTGTACAGAGCTCTGCAACAGGAGCAAAAGACCCAGACGGGCCTCGCTCCAGACATCCTCCAAAAACAGGAGGCCGTCACGTCCCACCTGTACCACAACCAGGCTAGTCACTGCTATCTTAGCACCCAGGACGAGGAGCCCCCCATACTGACCTATGAGGGCGGGGCCAGGAGTGAGGGGTACTACCAAGAACACTCAACCTCAGGCAAAGACACCTCCTCTAGTGACAATGACCCCCGCAGCTCTGACAAGGATGCCTCCACGGACGACGAGTCCCCGTCTTCCTCCTTCTCTGACGCCGGGAGTTACCTCCAGCACCTGTCTGTCTCACACCAGCCAGGGTCCCCTCTGCCCTCCCCGCAGGGCTCCTCCCAATGCCAAAGCGGGGACACCCAGGCAGAGGTTAAGGGCACTGCCCTGCCTCACAAACTGCGTCTCAAACACAAAGCCATGAGCACCCAGCAGAACTctcccaccacccctcctccttcctctatcCTACCCCTGCCCCAGCACCCTTACCTGGCCCTCATGCAGCAGCAGATcggcaaagagagggagagtgagcgcCAGCCCCCCACAGGGTTCTATAAGCAGCCGTCCTCAGCTGAGTCaaggaaggagagtgagagaaaggagtCGTCAAGCGGACGCCATAACAACAGCCGAGACTAAGTGCCTATAGAACACTTGAGGGCAACACAAATTTGTTGAGGTTCCTTACATTGTGAGGTGTCTCTGATGTTGCCTTAGATCAAAATACGCTctttccctttcccctcctcaATCTCAATCCACTATCGTCCCTTTACCCCCATCTACACCACCTTCATGTCCTGGGACTAAAAAGCTGTACTGAAGCCCAAAACAGGGCTGGACTTCTGGGGGAACAGTATTCTAtgtgtatatattgtatatacaCTTTTCAGTTCTTGCATCTTCTCCATAATTACAGAAGGACTTTTGTTTAtaaatgagaggagggaggaaactCTTTCATATCATTTTTCGTCAAACCACAGTTGGTCATTTCAAATGAGAATATAAGTTGACCATTATCGGAACTATACTGTCAGCTTTCATTGCCCCTCCTATGGTGCACATCTGGCTTTAGACAAACATAGCAGCAACATTCTGGGAACATTCTTGACCAAAGATGCAACAAAATGAGAAATTCCATCCCTCTTCCCTAACCCTACCAATCCATATATCCCTTCCCATCTCCATGATCTCAcacagcccatccattatctttCTTGTTCAAGCACTTGGTTTGTATATTACTGTAAATAATACACAataatttataaatatatatttttgaataaaacaaacaaaaatgtcacAACAATGTGACAAACTGTTGAGGCAAGAAAGGACTTGGACATTATCATCCTGTTTTTGTCAGAATTACTGTACAGTCACATTGTGTCTACTGTTGCAAACTCCACTTAAGTTAAAACGTCTTTAATGTCATCACTTTAACTCTGTTTGCAGAAACATGGCCGATAGCTTTTGAAATGCAGCTTCCCTGTTATTGCAGTAGATCTTTAAGATCTTAGACAGCATTCAATCAAAGTCAATCTGAGACAGAACTAGGCTGCTGGCCTAAAGTTGAGCATCATCAACAGTCTAGACTTCCACTGTTCCCATCTCTTAGCCCAATGTATTTATTCCTATGCCCACATCTGCAGAAAAGCCAATAGGAACATAGACTAAAATATGAATGTGTATAAACTTTAAGGTATAAAAGCTCAAGTTAAAACCGTAAAGTGGGGACATATAGGGGAGAGAGTTATTTTAAATATAGTAATATCATCTAAATGATATCTGTATGATATTTGAACTCTGAGTGAGGCCACCTAGTCTCCTCTGCAAATCAACACAATGCACTGAGCTCAGAACCTCAGGCTTCTAACCTGATGTCGATCCATGTGCGCTAGACACACGGAGTTAAACTCAGAAACTAGGTAATTGGATCTCTGAAACAGAGGCTAATTTACTATATTACACAAATAGCCCATGACGTTATAAAAACCTGGTTTAGAATAAGAGCTATTGCAATTAAGTTTTGTAAAAACCAAGGACAATCTCTACTTTGTTAATAAAATAGGGATTTCCCCTTTTTCTAATGTGCCTCTGTAGTGTAATACATGGGGCATCCACCCCCGGCCTTTATTTTCCTTGTTTTGGGTGACAATGAGAAGCCTGCACTGTACCACACAGTTTATAAAGTATATGTGCCATGTTTAGCTTTTTGCCACTTGTGTATAAATGTAAAGCTTTCACTCTCTGACAacactgtaatgttaatgtcatTGTTTTATTTTCTGAAGTGTTGTTCTGTTACTATCTTCGTGTGTCTTTCTCCTATAGACCGTGATGATGTATTTGCTCCATACCCCCATCCTCCCTTTTGTCAATGTGTTTTAAATCAGTGATGCTTGTGTTTTTGCTGATGGTTTTATGAAAAAGATTCAAGAAGGACAAAAAAGATGCAGACGAGACTAGTGTGGTGTTTAGCAGTAGGTGGTGTCTAGGTCGCCACCACCCCTTTTTGACATGGCTGTGTATGTAAAGACACTAATATTTATCATGGAAGATGGATGCATTTCAAGATTGAAAACAATAAAAAGGTTGTTGAATTTCTCAACATATCGTACAAA

Function

NR:

description
filaggrin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625023.2 False 4566 mRNA 0.47 2 77000960 77012928
XM_036938539.1 True 4353 mRNA 0.47 2 77002081 77012928

Neighbor

gene id symbol gene type direction distance location
LOC110538297 LOC106601356 coding upstream 4689 76991920 ~ 76996271 (+)
LOC110538299 LOC106601357 coding upstream 28871 76968770 ~ 76972089 (+)
LOC110538300 LOC106607082 coding upstream 35803 76951277 ~ 76965157 (+)
LOC118936312 LOC106589640 coding upstream 186236 76812258 ~ 76815056 (+)
LOC110538307 LOC106607087 coding upstream 189092 76809448 ~ 76811868 (+)
LOC118937747 NA coding downstream 57944 77070872 ~ 77078590 (+)
LOC110538293 LOC106601351 coding downstream 99116 77112044 ~ 77120816 (+)
LOC110538287 LOC106601346 coding downstream 285577 77298505 ~ 77301052 (+)
LOC110538285 LOC106601344 coding downstream 288282 77301210 ~ 77315227 (+)
LOC110538960 LOC106607023 coding downstream 307281 77320209 ~ 77354182 (+)
G1113270 NA non-coding upstream 22062 76976334 ~ 76978898 (+)
G1113284 NA non-coding upstream 73837 76926756 ~ 76927123 (+)
G1113247 NA non-coding upstream 121208 76875912 ~ 76879752 (+)
G1113244 NA non-coding upstream 127368 76873365 ~ 76873592 (+)
G1112464 LOC106601359 non-coding upstream 168591 76828740 ~ 76832369 (+)
G1113381 NA non-coding downstream 97879 77110807 ~ 77111076 (+)
G1113407 LOC106601347 non-coding downstream 154463 77167391 ~ 77171690 (+)
G1113639 NA non-coding downstream 208433 77221361 ~ 77221625 (+)
G1113647 NA non-coding downstream 215047 77227975 ~ 77228653 (+)
LOC110538283 LOC106607024 non-coding downstream 350167 77363072 ~ 77420925 (+)
LOC110538313 LOC106601291 other upstream 268842 76730857 ~ 76732118 (+)
LOC100136171 LOC100136171 other upstream 530733 76464742 ~ 76470326 (+)
G1112082 NA other upstream 700433 76300060 ~ 76300527 (+)
G1112079 NA other upstream 712458 76287598 ~ 76288502 (+)
G1111968 LOC106601158 other upstream 1105087 75895612 ~ 75895873 (+)
G1113861 LOC100136012 other downstream 578793 77591721 ~ 77624996 (+)
G1113968 NA other downstream 761290 77774218 ~ 77819621 (+)
LOC110538485 smarca4 other downstream 832589 77845399 ~ 77864078 (+)
LOC110486564 LOC106601427 other downstream 2037077 79049969 ~ 79053051 (+)
G1115550 LOC106601417 other downstream 2061738 79074666 ~ 79077216 (+)

Expression


Co-expression Network