LOC118937747


Basic Information

Item Value
gene id LOC118937747
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 77070872 ~ 77078590 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035146.1
CTTCCGATAAGGACCGTTGTCTTCTCGGGTATATATTTCATATCAGCAAGAAATacgtttttgttgtttttaaaaattattatacTACTACCCACCTTTGTGGGGTTAGGGTTCCCACACAAacatatttccatgttacagcgGACAGACAGAAGACAAAGTCCACTGCCTATGCTAATTAACTGCTTCTccaaacacctgtgtgtaaacagAAGACTGATGCCACAAAGTgctgtcactgaaaaatactgtctgCTGCAACTGTTTTAAAACCGGTTTGAACCGTGTACAGCTGTCGTGTTTGTGAAGACCAGAAGAGGCTGGTGGGAAGAGAaatgggaggacgggctcattgtaatgataccaaacacatggaaacaatgtgtttgactccgttccagctATTCCTTTCACACACAAGATCAGACACTCATCTCAGGAGTGGAAGACGAATTAGATTGACCCAACTAGTTCCTTCAACGGGCCTTTGAAGTCTGACTTCCAGTCTGAGTCTCCCTCCATGGATAGAATTGCGATTACACTGCATAGACATGGCACGTCAAATTGACACATTTTCTTTCAATGCTCATAAGCTAAAGAGCTGGTCACCCCAGAAAGACTATGCCAACAAATCCAACAATGTAGGGCTACTAGTGTAACATGTGTGTCATGGAATGGAAAGAGAGTATTTCTCAGTGAGTTGCTATAACAGATATTTGCACAGATGCTCACCTTTCCAGAGAACTTTCACAAAAAAACTTGTTACCCACCCAATCCATATCTGCCAAATAATGCTTTAAAATCAATGACGTTTGTTGGAGGGGTATTACATCCATACTGTATCTGATTAACCATTTAATATGTCACCATAAATCAGCCTAGGGCTCTAAACCTGTACCTGTTGTCGTCAGGACCTTCCATTTATCTGTTATTAATGTGTCATCTACAAATTAGGTTATGGGAAGTTAAAGAAATTACAACATTGTTCTCGGTAGGTATGGTTCTGTAACCTATCAAATAACTGTTCTGTCTGGAACAGACATCTAATAGTTTGTTTTGAAGGAAAAGTAAGAGATTATTCCAACTGATTGTATGGTTATTACACAGTAATAATTATTACTGATTGGATGTtattatacagtaattattataaCTGATTGTATATTACACAGTAATTGTTATTACTGATTGTATAGGTCATTACACAGTATGATACTTTAGATGTTGCAGGTTGTACTATTGCTGCTGCTAATGTTGATCATTAGTATTGTTTATATTTATATTGATGGCTGTCAGCCCATGACTGATGCACTTGCATTGTATGTATTACCTCTGGGACAAATAAAGTGGAAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035146.1 True 1355 mRNA 0.38 2 77070872 77078590

Neighbor

gene id symbol gene type direction distance location
nfil3-2 LOC106607079 coding upstream 57944 77000960 ~ 77012928 (+)
LOC110538297 LOC106601356 coding upstream 74601 76991920 ~ 76996271 (+)
LOC110538299 LOC106601357 coding upstream 98783 76968770 ~ 76972089 (+)
LOC110538300 LOC106607082 coding upstream 105715 76951277 ~ 76965157 (+)
LOC118936312 LOC106589640 coding upstream 256148 76812258 ~ 76815056 (+)
LOC110538293 LOC106601351 coding downstream 33454 77112044 ~ 77120816 (+)
LOC110538287 LOC106601346 coding downstream 219915 77298505 ~ 77301052 (+)
LOC110538285 LOC106601344 coding downstream 222620 77301210 ~ 77315227 (+)
LOC110538960 LOC106607023 coding downstream 241619 77320209 ~ 77354182 (+)
LOC110538283 LOC106607024 coding downstream 284482 77363072 ~ 77420925 (+)
G1113270 NA non-coding upstream 91974 76976334 ~ 76978898 (+)
G1113284 NA non-coding upstream 143749 76926756 ~ 76927123 (+)
G1113247 NA non-coding upstream 191120 76875912 ~ 76879752 (+)
G1113244 NA non-coding upstream 197280 76873365 ~ 76873592 (+)
G1112464 LOC106601359 non-coding upstream 238503 76828740 ~ 76832369 (+)
G1113381 NA non-coding downstream 32217 77110807 ~ 77111076 (+)
G1113407 LOC106601347 non-coding downstream 88801 77167391 ~ 77171690 (+)
G1113639 NA non-coding downstream 142771 77221361 ~ 77221625 (+)
G1113647 NA non-coding downstream 149385 77227975 ~ 77228653 (+)
LOC110538313 LOC106601291 other upstream 338754 76730857 ~ 76732118 (+)
LOC100136171 LOC100136171 other upstream 600645 76464742 ~ 76470326 (+)
G1112082 NA other upstream 770345 76300060 ~ 76300527 (+)
G1112079 NA other upstream 782370 76287598 ~ 76288502 (+)
G1111968 LOC106601158 other upstream 1174999 75895612 ~ 75895873 (+)
G1113861 LOC100136012 other downstream 513131 77591721 ~ 77624996 (+)
G1113968 NA other downstream 695628 77774218 ~ 77819621 (+)
LOC110538485 smarca4 other downstream 766927 77845399 ~ 77864078 (+)
LOC110486564 LOC106601427 other downstream 1971415 79049969 ~ 79053051 (+)
G1115550 LOC106601417 other downstream 1996076 79074666 ~ 79077216 (+)

Expression


Co-expression Network