LOC110538293 (LOC106601351)


Basic Information

Item Value
gene id LOC110538293
gene name LOC106601351
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 77112044 ~ 77120816 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625017.2
CAACGTCAATTTGCCACACTCAAAATGGCGACAGAACCTAACCATTCCTGACCTACGCAACGCAGGCGCCTGTGTTAACGTTTGTCCTCCTCTACCTTGTCAATTTGGAAAGGACTACGGAGGCCTGGGTCAAGGATCTCCAGCACTGTAAATTACAGAAATCTAGCTAACCATCATGGCACTGAGAAGCGCTGTGTGCCGTCTGCTGGTCAACCCCCAGAGATGTGCCATCATTTCAGCATCAAGATCTCAGGGATCAGCAGCACCTGCACAAAAGGATGCAGAGAAAGCTAGTGAGAAGAAGGCTAAAGCACCCAAGGTTCAGTTTAACTGGCGGGATGGCCTGGAGCTGGAGGGTCAGCTGACTGAGGACGAGATCATGATCCGAGACTCGTTCCGTGATTACTGTCAGGACAAACTCATGCCCCGCATTCTGATGGCCAACAGAAACGAAGTGTTCCATCGAGACATTGTGTCAGAGATGGGGGAGCTGGGTGTCCTGGGCCCAACTATTAAAGGCTATGGCTGTGCTGGGACGAGCTATGTGGCCTACGGTTTGATCGCGAGGGAAGTGGAGAGGGTGGACAGCGGCTACCGCTCTGTCATGAGTGTGCAGTCCTCCTTGGTCATGCACCCTATCTACGCGTACGGTACCGAAGAGCAGAAGGAGAAGTGGCTGCCCAGGCTGGCTCGTGGAGAGATCCTGGGCTGTTTTGGGTTGACTGAGCCCAACCACGGCAGTGACCCCGGTGGCATGGAGACCCGGGCTAAGTTCAACCCCTCCAGCCGCACCTTCACTCTCACTGGCTCCAAGACCTGGATCACCAACTCCCCTGTGGCGGACATCGCTGTGGTCTGGGCCAAGTGTGACGATGGGAAGGTGTGTGGCTTCATCCTGGAGCGCGGTATGAAGGGCTTCACCACACCCAAGATCGAGGGCAAGTTCTCTCTGAGGGCGTCTGCCACTGGAATGATCATCATGGACGAGGTGGAGGTTCCTGAGGAGAACCTGCTGCCCAAAGTCTCTGGCCTGGGGGGTCCCTTTGGTTGCCTGAACAATGCCCGGTATGGCATCGCCTGGGGTTCACTAGGTGCTGCAGAGTTCTGCTTCCACGCGGCTCGTCAGTACACACTAGACAGAATCCAGTTTGGAGTACCCCTGGCCAGAAACCAGCTGATGCAGAAAAAGATGGCCGACATGTTGACAGAAATCACCATTGGTCTGCAGGCCTGTCTACAGCTGGGGAGACTCATCGACGCCAAAAAgGCAGCCCCTGAGATGATCTCTATGCTAAAGAGGAACAGCTGTGGGAAGTCCCTGGACATCGCCCGGCAGGCCAGAGATATGCTGGGAGGAAACGGCATCTCTGATGAGTACCACATCATCCGCCATGTTATGAACCTGGAGGCCGTCAACACATACGAAGGTACCCATGACATCCATGCCCTGATTCTGGGCAGAGCCATCACTGGACTGCAGTCTTTCACTGTTAATAACTAACTGCCTGCTGCTAGTGCTCAAACAGACCACTATCAGAAACCTCAAGTCAATCTGTTCCTTAAAGGACAAGTAGTTCTACACTGCTTTGATGGCTTGTCTTCTACAGTAACACTAATgctaatgtttcctctctcttgAGTTTGTAGAATATGGGCTGGTTttctagacacagattaagcttggtcctggactaaaaagcatgctcaatggagaatctcgaTTGAAATTGCTTTTTAGACCAGGACTAGGCTTagtctgtgtccgggaaaccagTCCTAAATCTTTATTTTATGCGAAAGACCAGGTCGGGTTTTAAAGGCAAGTCTATCATCGATCTCATGGACAATTCATGGGTGTAATTATTTCAACTTGAAAAACAAAGCTATTTTTCTACTCTCATAAAACCCTAGTACATACTGGTTTGTTTGGACAATTTCTGTCTAGAATGTGTTTGAAATAGTTTACTATACGGTGGAAGTTGAAATGCTTGTTTCCTCACAGCATTTGTAGTAAAATGGTTGTTGGACAAACATTTTAAAATTAGGTCATGATCCATACGTATGTCCTGAGTTTTTAGAACTGTGATGGTACTAATGACCAGTTATTGGTAATTGAATGCCAAATAATTGATACTGCATGTACTGTTAGAGTTGGGGGGAAAAAAGTTAAATCAATTGAAGATAAATTAAGTAAATAAATTAAAGCAGTTTAAATAATCATGCCATTGCTTTTTTTGTAATTTAATAGTTGTATTTGTGACCATTTAGGCAGATCCGAGAAATTTGTATTTGGGGTATTCCATGAAGTGTAttttgcgtccctttgatatagaaattgtgcaccactattgaattttaaaagcctgttacattaaatgaagtgccctttaatatagattACACGGAGTATTCAATAAATCCGATTTCTATTATGACTCGCTAAATGTGCACTGTGACTTCTGGAAGATTTTAACGCACTTAAACTCAAAAGTTTTCCCCA

Function

NR:

description
glutaryl-CoA dehydrogenase, mitochondrial-like

GO: NA

KEGG:

id description
K00252 GCDH, gcdH; glutaryl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625017.2 True 2500 mRNA 0.47 12 77112044 77120816

Neighbor

gene id symbol gene type direction distance location
LOC118937747 NA coding upstream 33454 77070872 ~ 77078590 (+)
nfil3-2 LOC106607079 coding upstream 99116 77000960 ~ 77012928 (+)
LOC110538297 LOC106601356 coding upstream 115773 76991920 ~ 76996271 (+)
LOC110538299 LOC106601357 coding upstream 139955 76968770 ~ 76972089 (+)
LOC110538300 LOC106607082 coding upstream 146887 76951277 ~ 76965157 (+)
LOC110538287 LOC106601346 coding downstream 177689 77298505 ~ 77301052 (+)
LOC110538285 LOC106601344 coding downstream 180394 77301210 ~ 77315227 (+)
LOC110538960 LOC106607023 coding downstream 199393 77320209 ~ 77354182 (+)
LOC110538283 LOC106607024 coding downstream 242256 77363072 ~ 77420925 (+)
LOC110538464 LOC106607025 coding downstream 311766 77432582 ~ 77445522 (+)
G1113381 NA non-coding upstream 968 77110807 ~ 77111076 (+)
G1113270 NA non-coding upstream 133146 76976334 ~ 76978898 (+)
G1113284 NA non-coding upstream 184921 76926756 ~ 76927123 (+)
G1113247 NA non-coding upstream 232292 76875912 ~ 76879752 (+)
G1113244 NA non-coding upstream 238452 76873365 ~ 76873592 (+)
G1113407 LOC106601347 non-coding downstream 46575 77167391 ~ 77171690 (+)
G1113639 NA non-coding downstream 100545 77221361 ~ 77221625 (+)
G1113647 NA non-coding downstream 107159 77227975 ~ 77228653 (+)
G1113807 NA non-coding downstream 346102 77466918 ~ 77467150 (+)
LOC110538313 LOC106601291 other upstream 379926 76730857 ~ 76732118 (+)
LOC100136171 LOC100136171 other upstream 641817 76464742 ~ 76470326 (+)
G1112082 NA other upstream 811517 76300060 ~ 76300527 (+)
G1112079 NA other upstream 823542 76287598 ~ 76288502 (+)
G1111968 LOC106601158 other upstream 1216171 75895612 ~ 75895873 (+)
G1113861 LOC100136012 other downstream 470905 77591721 ~ 77624996 (+)
G1113968 NA other downstream 653402 77774218 ~ 77819621 (+)
LOC110538485 smarca4 other downstream 724701 77845399 ~ 77864078 (+)
LOC110486564 LOC106601427 other downstream 1929189 79049969 ~ 79053051 (+)
G1115550 LOC106601417 other downstream 1953850 79074666 ~ 79077216 (+)

Expression


Co-expression Network