LOC110538288 (LOC106607073)


Basic Information

Item Value
gene id LOC110538288
gene name LOC106607073
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 77169823 ~ 77194374 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938544.1
tttcggttttcacattacgtttattgttttgtacagTTCGTGTTTCATCAttattaaataaacatggatcgcaatagccacgccgcattttggtccgactctctttccCATACAGAAAACCGTAACAATGAGTGCCTTCTCACTCTGAGGACCCCGATGGCTACCTGAGGCCAGTGATGTTGGCCATGCAGCACTACAACTCCTCAGGCCTGGCTGCCCCCAATCTCCTCCCCAACCAGACCTGGGGGGTGGAGGGTGTGCCAGCCATGGCCTGGAGGGCAAACATCACCACAGAGAGGCCCATGTCTCCCCCCAGTAACCCCACTGCAGCTGGCCTCTCCATGACCCTGGGCATCCTGTCCAACATCGTGGCCCTGGTCATCCTGGCGAAAGCCTATGCCCGTCTGCGCCGCCGCTCCAAGGCCACCTTCCTGCTCTTCGCCAGTTCCCTGGTAGCCACAGACTTTGCCGGCCACATCATCCCCGGTGCACTGGTGTTGAGGCTGTACTCAGCTGGGGCTGCGACTGGGCCCTTAGGTCTCGCTGCCACCGATGCCCCCTGCCAGTTCCTAGGGGGTagcatggtgttcttcggcttgtgcCCATTGTTCCTGGGCTGTGCCATGGCTGCTGAGCGCTGCCTGGGTGTCACACAGCCCCTGCTCCATGCCTCACTGGTCACCACGGCTCGCACCAAGATGGCACTAGCTCTCATCTGGCTGCTGGCTCTGTGTGTGGCCTTTCTGCCCTTCTTCAGGCTGGGGGCCTACACCTACCAGTACCCCGGGACCTGGTGCTTCATCAGTGTCCTGGGAGAGACTCAGGAGACGGACGTGGCCTTTGTCATGCTGTTCTCTGGACTGGGCCTGGCCTCTCTGACTGTGGCCCTGGTGTGTAATACCATCAGTGGGGTCACGCTGGTGCTTGCCAGACTGCGTAAGAAGTGTAAGACCTGCTACCGTCGCTCAGCCAAGTCCCATGACATTGAGATGGTGGCCCAGCTGGTGGGCATTATGATCACTTCTTGCATCTGCTGGAGCCCCCTGCTGATCTTTGGCCTGATGTCAGTCACATGGTCCTATAGCGGTTCCATAGGCAATGACCAGGACACATACAGGAGGTTGATGGTGATGGGCGTCCGGCTGGCCTCCTGGAACCAGATCCTGGACCCCTGGGTCTACATTTTGCTGCGCCGGGCCGTGCTGAGGAAGATCTATCGCATCACCAAGAGCCGGGCCAGCTTCAAGAACAGCACCTTCCGCCATTGGGACATCAGCTCCTTCCAGAACTCTGAGAAAATAAACACTGTCAACAGGATCTGAGGGAGaagaaaacacacagacagaaagagactgGCATCTTATCATGGTCCTTTGTTGTTCTCGGTGCTTTATTTGCCACTCAACTCAACATGCTGGATTGAGGAGAAGACTGAACATCCAGCAGTAGGATCTAACAGCAGTGTTGGTGTATCACACAAAAGGAAATACCCATTGCCTATAAGACCTATATTCCTTTATTGAGAACTGTGTGGGTCTGCCTGACTGTGAAAGTCTATGGGGTTTGGGATTGAAATCATCATCCTCCAGATCTTGGATCTCTTTCAGATTGATTTGATTGGCCAGTAAGACCTGCTTTGACTGTTGTGTGGAGAAGTCTCATCATTTTATGGGAAACAGCCAAGCCAGACTATACTCAAACAAATTAAATGTCATTAATGGATTTATAACAAAACATTCTGACCAAGTAAGGACAGTATGCCTCACCTGGATACTGGAGACATAGCACAGATAAATCTGCCCAAGGAGAAGGGTTTGTTGTAAAAGTGTCTGGTAGGTCACGCAACATGAGTCTTTCTCTGTGTACATAACTGTACATGAAATGAAGCTGCCTATAAGATATCAACAACAAACATCTCAAATTATAtatacgtgtttgtgtgtgttactgtcagtgtttttttGGAGTTcatactttgtttgtttgtggaaATGTCAAAGTGCACTTTGACACATCATGAAGTCAGTGGCACTATGCCAAAGCAAAGTAAAGGCTGTGCTTTTACCTGTGCTTGAAGATGTgaaagacatacagtatgtgtcaaACTTGTAATGCTATTGACgtgtgaattgtgtgtgtgtgtgtatttattgcTTATATTGTTTCCCCAATTGTCTGGGGACCTAAATGAAGCTAAGTGTTGCAAAAGCTATAGAATTTAATGTTGTCTAATAAAGTTTAAGTTGCCGGTTATCCTTTTTTACTGAAAAA
>XM_021625012.2
ACGAAACAAACGTTGAATAGTAAATGGTTGGCTGTGCAACCTTTTGGAGACTGGGTCTTGATCTTGGTGACGGACTTCTCGTGCGGTTGCTCGTTTTGTTTTCTTTAGGAGAATGAGGCACTCCTCGGGATACATGACTTCACTATCAGCTCAGGTTATCATTGTTGATAATAAGTAACATTCTCGTGCACGAATCCCTGAGTTTGAGGAACTTTTGAATGTCATGGTTCACGGTGAAATGATTTAACATCTGAAAACCAAAGGAATACATCTTCATTTGTTTCTATGGATTCACTGTTTGGTCAGTGCCTTCTCACTCTGAGGACCCCGATGGCTACCTGAGGCCAGTGATGTTGGCCATGCAGCACTACAACTCCTCAGGCCTGGCTGCCCCCAATCTCCTCCCCAACCAGACCTGGGGGGTGGAGGGTGTGCCAGCCATGGCCTGGAGGGCAAACATCACCACAGAGAGGCCCATGTCTCCCCCCAGTAACCCCACTGCAGCTGGCCTCTCCATGACCCTGGGCATCCTGTCCAACATCGTGGCCCTGGTCATCCTGGCGAAAGCCTATGCCCGTCTGCGCCGCCGCTCCAAGGCCACCTTCCTGCTCTTCGCCAGTTCCCTGGTAGCCACAGACTTTGCCGGCCACATCATCCCCGGTGCACTGGTGTTGAGGCTGTACTCAGCTGGGGCTGCGACTGGGCCCTTAGGTCTCGCTGCCACCGATGCCCCCTGCCAGTTCCTAGGGGGTagcatggtgttcttcggcttgtgcCCATTGTTCCTGGGCTGTGCCATGGCTGCTGAGCGCTGCCTGGGTGTCACACAGCCCCTGCTCCATGCCTCACTGGTCACCACGGCTCGCACCAAGATGGCACTAGCTCTCATCTGGCTGCTGGCTCTGTGTGTGGCCTTTCTGCCCTTCTTCAGGCTGGGGGCCTACACCTACCAGTACCCCGGGACCTGGTGCTTCATCAGTGTCCTGGGAGAGACTCAGGAGACGGACGTGGCCTTTGTCATGCTGTTCTCTGGACTGGGCCTGGCCTCTCTGACTGTGGCCCTGGTGTGTAATACCATCAGTGGGGTCACGCTGGTGCTTGCCAGACTGCGTAAGAAGTGTAAGACCTGCTACCGTCGCTCAGCCAAGTCCCATGACATTGAGATGGTGGCCCAGCTGGTGGGCATTATGATCACTTCTTGCATCTGCTGGAGCCCCCTGCTGATCTTTGGCCTGATGTCAGTCACATGGTCCTATAGCGGTTCCATAGGCAATGACCAGGACACATACAGGAGGTTGATGGTGATGGGCGTCCGGCTGGCCTCCTGGAACCAGATCCTGGACCCCTGGGTCTACATTTTGCTGCGCCGGGCCGTGCTGAGGAAGATCTATCGCATCACCAAGAGCCGGGCCAGCTTCAAGAACAGCACCTTCCGCCATTGGGACATCAGCTCCTTCCAGAACTCTGAGAAAATAAACACTGTCAACAGGATCTGAGGGAGaagaaaacacacagacagaaagagactgGCATCTTATCATGGTCCTTTGTTGTTCTCGGTGCTTTATTTGCCACTCAACTCAACATGCTGGATTGAGGAGAAGACTGAACATCCAGCAGTAGGATCTAACAGCAGTGTTGGTGTATCACACAAAAGGAAATACCCATTGCCTATAAGACCTATATTCCTTTATTGAGAACTGTGTGGGTCTGCCTGACTGTGAAAGTCTATGGGGTTTGGGATTGAAATCATCATCCTCCAGATCTTGGATCTCTTTCAGATTGATTTGATTGGCCAGTAAGACCTGCTTTGACTGTTGTGTGGAGAAGTCTCATCATTTTATGGGAAACAGCCAAGCCAGACTATACTCAAACAAATTAAATGTCATTAATGGATTTATAACAAAACATTCTGACCAAGTAAGGACAGTATGCCTCACCTGGATACTGGAGACATAGCACAGATAAATCTGCCCAAGGAGAAGGGTTTGTTGTAAAAGTGTCTGGTAGGTCACGCAACATGAGTCTTTCTCTGTGTACATAACTGTACATGAAATGAAGCTGCCTATAAGATATCAACAACAAACATCTCAAATTATAtatacgtgtttgtgtgtgttactgtcagtgtttttttGGAGTTcatactttgtttgtttgtggaaATGTCAAAGTGCACTTTGACACATCATGAAGTCAGTGGCACTATGCCAAAGCAAAGTAAAGGCTGTGCTTTTACCTGTGCTTGAAGATGTgaaagacatacagtatgtgtcaaACTTGTAATGCTATTGACgtgtgaattgtgtgtgtgtgtgtatttattgcTTATATTGTTTCCCCAATTGTCTGGGGACCTAAATGAAGCTAAGTGTTGCAAAAGCTATAGAATTTAATGTTGTCTAATAAAGTTTAAGTTGCCGGTTATCCTTTTTTACTGAAAAA
>TU1266174
GTACAAGTCTATAAAGAGGGCTGAGCAACGAAACAAACGTTGAATAGTAAATGGTTGGCTGTGCAACCTTTTGGAGACTGGGTCTTGATCTTGGTGACGGACTTCTCGTGCGGTTGCTCGTTTTGTTTTCTTTAGGAGAATGAGGCACTCCTCGGGATACATGACTTCACTATCAGCTCAGGTTATCATTGTTGATAATAAGTAACATTCTCGTGCACGAATCCCTGAGTTTGAGGAACTTTTGAATGTCATGGTTCACGGTGAAATGATTTAACATCTGAAAACCAAAGGAATACATCTTCATTTGTTTCTATGGATTCACTGTTTGGTCAGTGCCTTCTCACTCTGAGGACCCCGATGGCTACCTGAGGCCAGTGATGTTGGCCATGCAGCACTACAACTCCTCAGGCCTGGCTGCCCCCAATCTCCTCCCCAACCAGACCTGGGGGGTGGAGGGTGTGCCAGCCATGGCCTGGAGGGCAAACATCACCACAGAGAGGCCCATGTCTCCCCCCAGTAACCCCACTG

Function

NR:

description
prostaglandin E2 receptor EP1 subtype-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938544.1 False 2271 mRNA 0.50 3 77169823 77175626
XM_021625012.2 False 2445 mRNA 0.49 3 77169823 77194347
TU1266174 True 528 lncRNA 0.49 2 77174939 77194374

Neighbor

gene id symbol gene type direction distance location
LOC110538289 LOC106601349 coding downstream 3172 77147190 ~ 77166651 (-)
LOC110538291 LOC106601350 coding downstream 27623 77131049 ~ 77142200 (-)
syce2 LOC106601352 coding downstream 46791 77121547 ~ 77123032 (-)
LOC110538294 LOC106601353 coding downstream 60304 77084949 ~ 77109519 (-)
LOC110538295 LOC106607078 coding downstream 97855 77056344 ~ 77071968 (-)
si:ch211-194b1.1 LOC106601342 coding upstream 76286 77270633 ~ 77289586 (-)
pglyrp6 LOC106601345 coding upstream 96083 77290430 ~ 77302205 (-)
LOC110538465 LOC106607026 coding upstream 251177 77445524 ~ 77450347 (-)
LOC110539172 LOC106607008 coding upstream 275510 77469857 ~ 77478487 (-)
LOC110538468 LOC106601163 coding upstream 299246 77493593 ~ 77501440 (-)
G1113515 NA non-coding downstream 40877 77128547 ~ 77128946 (-)
G1113589 NA non-coding downstream 41340 77127913 ~ 77128483 (-)
G1113588 NA non-coding downstream 42353 77127250 ~ 77127470 (-)
G1113560 NA non-coding downstream 102339 77067066 ~ 77067484 (-)
G1113553 NA non-coding downstream 121375 77048126 ~ 77048448 (-)
G1113635 NA non-coding upstream 21824 77216171 ~ 77216699 (-)
G1113637 NA non-coding upstream 24532 77218879 ~ 77219111 (-)
G1113649 NA non-coding upstream 34767 77229114 ~ 77229407 (-)
G1113665 NA non-coding upstream 45771 77240118 ~ 77240320 (-)
G1113682 NA non-coding upstream 52506 77246853 ~ 77250827 (-)
LOC110538302 LOC106601359 other downstream 334540 76828760 ~ 76844798 (-)
G1113043 LOC106601201 other downstream 684538 76484372 ~ 76485285 (-)
LOC110538323 NA other downstream 736253 76428548 ~ 76478939 (-)
G1113013 NA other downstream 755612 76412940 ~ 76414211 (-)
G1112997 NA other downstream 788096 76380928 ~ 76381727 (-)
G1114604 LOC106607027 other upstream 287764 77482111 ~ 77484731 (-)
LOC110538477 LOC106607035 other upstream 416498 77610820 ~ 77612826 (-)
G1114714 NA other upstream 500148 77694495 ~ 77695275 (-)
LOC110539174 prdx2 other upstream 510160 77704482 ~ 77719934 (-)
G1114809 smarca4 other upstream 664515 77858862 ~ 77862506 (-)

Expression


Co-expression Network