pglyrp6 (LOC106601345)


Basic Information

Item Value
gene id pglyrp6
gene name LOC106601345
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 77290430 ~ 77302205 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625007.2
taattagctatctgcgTCTCCTAAACACCTGTGCGGGAACAaggacgccacaaacgtgttgaaactgaaaaatacTGCTGGTTGAAACTGTTAAaacagtgtacaGTAGGCGATGCCATGCATAATACATGTCAGGAGCACAGGGCGTTGAAGACTCAATGATTTCTCCAATGGAACCGCACTGGAAATGGTGTCTGACCCTTCTTGTAATCTTGGTCAGTGCTCACACGGATACCAAAGTCACGTCCTCCCAGCATATGGACGACTTCATCAGAGTGTTGGAGCAGGTAGAAGACAGTAACCCTGGACTGGAGCCTGTAAATGTGTTGAGAGGCCTGCGCAGGGCAGCCGGTCTCAGAGATGAGTTCATGCAGCACTTCTTGGGCACTATCAGGGAGGACAGCACCTCAGAGGCACCAGTCATGGACTCCAATCTCTCAGATTTCATTGTCAGGGCTATGCGCCACAaggtgacagagagaggtagagaggaaggggttgtccTTACTGCTGATGGCACCACGGTTGCTATGAGCCCAGTTCTCCTGGGTATTGAAGCTGGGCTAGTGTCTAAGACGAGGTGTCGGGTCCGTGGCCTGTACCCCCTCACTTTGGCTAGGAACTTGGGTCTGTCCTTCCAGCGCTTCCACAGCTCTCTCCTTTCCCAACGCCTGGGCCCTGATGGCTGCTGGGATGACGTGACCTCGCCTCAGGTCTTCACCCTCTCCGACAAGCCCTCCCTCGCTACCGATGCCCTGGTTAACGGCGGTATGGATGGTGTGATTCTGGGGATTGAGGTCTCAGCTCAGTCCCAGCGTCCTCTCAAGCTGAGCAGCCTACTGAGGAGGTACTACTGTCATCGTCTTGAGGGGGAAGGACTGGATGCTGCTCCTCGTCTGATCAGCCACCTACGCAGGGAGAACTTCAGAGAACTGGCCAGGCCCCCCCTCCTGCAGAGGCAGGTGGTGAGATCCCTGGTCCTTCAGAGGAGACTGATCGACCACTCCACGATGTTGTCACAGGAAAAGGAAGAGCTGACAGCGGTGGTGAGGGAAGGAATAAAGGAGTTTGTCCACAGATACATGGACTGTCCAGCTATTATCCCACGGTGTCAGTGGGGGGCTGCACCATATCGGGGCACTCCCACCCCCCTGTCACTCCCCCTCTCGTTCATGTACATCCACCACACCTACCAGCCTGGCCAGCCTTGTCTCACCTTTCAGCAGTGTTCTGCAGACATGAGGTCCATGCAACGCTTTCACCAGGATGACCGGGGCTGGGACGATATTGGATACAGCTTTGTGGCAGGCTCTGACGGGTACCTCTATGAGGGGCGTGGGTGGCACTGGCAAGGGGCCCACACTAAGGGCTACAACTCCAAGGGCTATGGGGTGTCATTCATCGGTGACTACACCTCCAGCTTGCCATCGGAGCAGACCATGGAGCTGGTGAGAGATCGTCTGGCATCCTGTGCTGTGGGAGGCGGGCGACTGGTCGGCAACTTCACCCTGTATGGCCACAGACAGCTGGTTAAGACTTCCTGTCCTGGAGACGCCTTCTACTCAGAGATCACAGGCTGGGAGCACTTTGGGGAGGTTCAAAACTGAAGATAATGTGAAAAGTGGAGTGTTTAATCTTGACCAGTATCAGAGAATAAATATTTAATTTCTAAAATGGC

Function

NR:

description
N-acetylmuramoyl-L-alanine amidase-like

GO:

id name namespace
GO:0009253 peptidoglycan catabolic process biological_process
GO:0042742 defense response to bacterium biological_process
GO:0008745 N-acetylmuramoyl-L-alanine amidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01446 PGRP; peptidoglycan recognition protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625007.2 True 1678 mRNA 0.54 6 77290430 77302205

Neighbor

gene id symbol gene type direction distance location
si:ch211-194b1.1 LOC106601342 coding downstream 844 77270633 ~ 77289586 (-)
LOC110538288 LOC106607073 coding downstream 96083 77169823 ~ 77194374 (-)
LOC110538289 LOC106601349 coding downstream 123779 77147190 ~ 77166651 (-)
LOC110538291 LOC106601350 coding downstream 148230 77131049 ~ 77142200 (-)
syce2 LOC106601352 coding downstream 167398 77121547 ~ 77123032 (-)
LOC110538465 LOC106607026 coding upstream 143319 77445524 ~ 77450347 (-)
LOC110539172 LOC106607008 coding upstream 167652 77469857 ~ 77478487 (-)
LOC110538468 LOC106601163 coding upstream 191388 77493593 ~ 77501440 (-)
LOC110538477 LOC106607035 coding upstream 308615 77610820 ~ 77612826 (-)
LOC110538478 LOC106607036 coding upstream 331562 77633767 ~ 77649740 (-)
G1113687 NA non-coding downstream 38269 77251938 ~ 77252161 (-)
G1113686 NA non-coding downstream 38658 77251550 ~ 77251772 (-)
G1113682 NA non-coding downstream 39603 77246853 ~ 77250827 (-)
G1113665 NA non-coding downstream 50110 77240118 ~ 77240320 (-)
G1113649 NA non-coding downstream 61023 77229114 ~ 77229407 (-)
G1114531 LOC106601339 non-coding upstream 87820 77390025 ~ 77445496 (-)
G1114537 NA non-coding upstream 95963 77398168 ~ 77418890 (-)
G1114536 NA non-coding upstream 100995 77403200 ~ 77439929 (-)
G1114603 LOC106607027 non-coding upstream 178963 77481168 ~ 77481478 (-)
G1114604 LOC106607027 non-coding upstream 180474 77482111 ~ 77484731 (-)
LOC110538302 LOC106601359 other downstream 455147 76828760 ~ 76844798 (-)
G1113043 LOC106601201 other downstream 805145 76484372 ~ 76485285 (-)
LOC110538323 NA other downstream 856860 76428548 ~ 76478939 (-)
G1113013 NA other downstream 876219 76412940 ~ 76414211 (-)
G1112997 NA other downstream 908703 76380928 ~ 76381727 (-)
G1114714 NA other upstream 392290 77694495 ~ 77695275 (-)
LOC110539174 prdx2 other upstream 402302 77704482 ~ 77719934 (-)
G1114809 smarca4 other upstream 556657 77858862 ~ 77862506 (-)

Expression


Co-expression Network