LOC110538287 (LOC106601346)


Basic Information

Item Value
gene id LOC110538287
gene name LOC106601346
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 77298505 ~ 77301052 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625009.2
ATTACACATGTGGCAACCGCTAAATGTCAGATGAGCACATGCACTGCTGATGATAGATCAGTGCTTTACTAGAACAAGACACGTGACCAGAACAGGAAGTCACCAACACCGCAGCAGGCTGAAAACATTGAAAGACGAAAATGGACACTCGGTTCACGAGAGGAAAGTCAAACATCCTGGAACGGCCTCTAACCCGTCCCAAGACTGAAGTCAGTGTGAGTGCCTTTGCACTGCTCTTCTCTGAGATGGTGCAGTATTGCCAGAGCCGCGTGTACTCTGTGTCCGAGCTCCAGCAACGCTTGGCAGACCTGGGTCAGAGCGTTGGCGCCAGTATGCTGGACGTGCTGGTGCTGAGGGAGAAGAATGGGAAGAGGGAGACCAAGGTGCTTAACATACTGCTCTTCGTCAAGGTGTCAGTATGGAAAGCCATGTTCGGTAAGGAGGCAGACAAGCTGGAGCAGGCCAACGATGACGACAAGACCTACTACATCATAGAGAAGGAGCCACTGATCAACGCTTACATCTCTGTGCCCAAGGAGAACAGCACACTAAACTGTGCTGCATTCACCGCTGGCATCGTAGAGGCCATTCTCACACACAGTGGCTTCCCTGCCAAGGTCACAGCCCACTGGCACAAGGGCACCACGCTCATGATCAAGTTTGATGAAGCTGTGATAGCCAGAGACAAGGCCCTGGATGGCAGATAGATGAGAGTGTTGGTGTACACATGCTAGAATAAGAGAATGATGAAGTTGATCATCATTCTCACTAGGTCTCAATATGCTCTGCCGTGTGAACGAGCCAGTAATGTGAGATATGGACTGAGTGAGTTAGTGGTCTGTCTGTAGACAAGTCTGCATAGGAGTAGTTGAGttgtgaatatacagtatattgagaAGTGAAACAGGATGTCTATATCACCACATGAGAGAGAGTAAATATGAATGAATGATTAGAATGTTAGTCCCAATTCTGAGCTATTATATTTATTTGGTCCAAGGAGAGTTCATATGAGACAACATTTATAAAGGTCAATGTTTCTTGTGAATCTCCTCAGTCAGTCAACCCTTATCTAATGACTCACTGACAGTATCTTAAACCATCTCTTATGACTGCATCATCTCTTGTTTTTGATATCTCAAGACATTTCTGAATCACACAAAGGACCAACACATTGAAAATATGGACTGCAGTATAATACACCAATATGTGCAATGGTTTACCCTCCAACTGAGTTCAACGTGGTGAAATTAAAGACTGTCATTGTGTTCCCTAAACAAATTACATTTTAAGCTATTATTCAAAATGTGAAAGTTATCAGTGGTCCTCTCCACAGAACATTATGTTGGCAAAAATGTAATGACTCCACCTGGGTTTGTAGGTGTAGTTttattttacacctttatttttttatatctAGACATGTTTGAAATACGTTTACTGTTTATCACCGTGTGTAAGCATTTGAGCAATTAACTGATATTAAAAGACTTGCTGA
>XM_021625008.2
ATGTGGCAACCGCTAAATGTCAGATGAGCACATGCACTGCTGATGATAGATCAGTGCTTTACTAGAACAAGACACGTGACCAGAACAGGAAGTCACCAACACCGCAGCAGGCTGAAAACATTGAAAGACGATCATTCTCTTTCAGAAAATGGACACTCGGTTCACGAGAGGAAAGTCAAACATCCTGGAACGGCCTCTAACCCGTCCCAAGACTGAAGTCAGTGTGAGTGCCTTTGCACTGCTCTTCTCTGAGATGGTGCAGTATTGCCAGAGCCGCGTGTACTCTGTGTCCGAGCTCCAGCAACGCTTGGCAGACCTGGGTCAGAGCGTTGGCGCCAGTATGCTGGACGTGCTGGTGCTGAGGGAGAAGAATGGGAAGAGGGAGACCAAGGTGCTTAACATACTGCTCTTCGTCAAGGTGTCAGTATGGAAAGCCATGTTCGGTAAGGAGGCAGACAAGCTGGAGCAGGCCAACGATGACGACAAGACCTACTACATCATAGAGAAGGAGCCACTGATCAACGCTTACATCTCTGTGCCCAAGGAGAACAGCACACTAAACTGTGCTGCATTCACCGCTGGCATCGTAGAGGCCATTCTCACACACAGTGGCTTCCCTGCCAAGGTCACAGCCCACTGGCACAAGGGCACCACGCTCATGATCAAGTTTGATGAAGCTGTGATAGCCAGAGACAAGGCCCTGGATGGCAGATAGATGAGAGTGTTGGTGTACACATGCTAGAATAAGAGAATGATGAAGTTGATCATCATTCTCACTAGGTCTCAATATGCTCTGCCGTGTGAACGAGCCAGTAATGTGAGATATGGACTGAGTGAGTTAGTGGTCTGTCTGTAGACAAGTCTGCATAGGAGTAGTTGAGttgtgaatatacagtatattgagaAGTGAAACAGGATGTCTATATCACCACATGAGAGAGAGTAAATATGAATGAATGATTAGAATGTTAGTCCCAATTCTGAGCTATTATATTTATTTGGTCCAAGGAGAGTTCATATGAGACAACATTTATAAAGGTCAATGTTTCTTGTGAATCTCCTCAGTCAGTCAACCCTTATCTAATGACTCACTGACAGTATCTTAAACCATCTCTTATGACTGCATCATCTCTTGTTTTTGATATCTCAAGACATTTCTGAATCACACAAAGGACCAACACATTGAAAATATGGACTGCAGTATAATACACCAATATGTGCAATGGTTTACCCTCCAACTGAGTTCAACGTGGTGAAATTAAAGACTGTCATTGTGTTCCCTAAACAAATTACATTTTAAGCTATTATTCAAAATGTGAAAGTTATCAGTGGTCCTCTCCACAGAACATTATGTTGGCAAAAATGTAATGACTCCACCTGGGTTTGTAGGTGTAGTTttattttacacctttatttttttatatctAGACATGTTTGAAATACGTTTACTGTTTATCACCGTGTGTAAGCATTTGAGCAATTAACTGATATTAAAAGACTTGCTGA
>XM_021625011.2
TCAGTGCTTTACTAGAACAAGACACGTGACCAGAACAGGAAGTCACCAACACCGCAGCAGGCTGAAAACATTGAAAGACGGTAAAGATTTCCGCAGCCCGCGCATGCGCCGAAGCTGGCCCTCTTGAGGCGCGGCTACCTGAATCCCAAAACAACCCCCATAGGCCGTACTCCTTTCACCTGATTTATGCGCGAGGCACGTGACTACACAGCGAGCTGTGACGAATTCTAGAGAAAATGGACACTCGGTTCACGAGAGGAAAGTCAAACATCCTGGAACGGCCTCTAACCCGTCCCAAGACTGAAGTCAGTGTGAGTGCCTTTGCACTGCTCTTCTCTGAGATGGTGCAGTATTGCCAGAGCCGCGTGTACTCTGTGTCCGAGCTCCAGCAACGCTTGGCAGACCTGGGTCAGAGCGTTGGCGCCAGTATGCTGGACGTGCTGGTGCTGAGGGAGAAGAATGGGAAGAGGGAGACCAAGGTGCTTAACATACTGCTCTTCGTCAAGGTGTCAGTATGGAAAGCCATGTTCGGTAAGGAGGCAGACAAGCTGGAGCAGGCCAACGATGACGACAAGACCTACTACATCATAGAGAAGGAGCCACTGATCAACGCTTACATCTCTGTGCCCAAGGAGAACAGCACACTAAACTGTGCTGCATTCACCGCTGGCATCGTAGAGGCCATTCTCACACACAGTGGCTTCCCTGCCAAGGTCACAGCCCACTGGCACAAGGGCACCACGCTCATGATCAAGTTTGATGAAGCTGTGATAGCCAGAGACAAGGCCCTGGATGGCAGATAGATGAGAGTGTTGGTGTACACATGCTAGAATAAGAGAATGATGAAGTTGATCATCATTCTCACTAGGTCTCAATATGCTCTGCCGTGTGAACGAGCCAGTAATGTGAGATATGGACTGAGTGAGTTAGTGGTCTGTCTGTAGACAAGTCTGCATAGGAGTAGTTGAGttgtgaatatacagtatattgagaAGTGAAACAGGATGTCTATATCACCACATGAGAGAGAGTAAATATGAATGAATGATTAGAATGTTAGTCCCAATTCTGAGCTATTATATTTATTTGGTCCAAGGAGAGTTCATATGAGACAACATTTATAAAGGTCAATGTTTCTTGTGAATCTCCTCAGTCAGTCAACCCTTATCTAATGACTCACTGACAGTATCTTAAACCATCTCTTATGACTGCATCATCTCTTGTTTTTGATATCTCAAGACATTTCTGAATCACACAAAGGACCAACACATTGAAAATATGGACTGCAGTATAATACACCAATATGTGCAATGGTTTACCCTCCAACTGAGTTCAACGTGGTGAAATTAAAGACTGTCATTGTGTTCCCTAAACAAATTACATTTTAAGCTATTATTCAAAATGTGAAAGTTATCAGTGGTCCTCTCCACAGAACATTATGTTGGCAAAAATGTAATGACTCCACCTGGGTTTGTAGGTGTAGTTttattttacacctttatttttttatatctAGACATGTTTGAAATACGTTTACTGTTTATCACCGTGTGTAAGCATTTGAGCAATTAACTGATATTAAAAGACTTGCTGA

Function

NR:

description
PREDICTED: trafficking protein particle complex subunit 5-like

GO: NA

KEGG:

id description
K20280 TRAPPC5, TRS31; trafficking protein particle complex subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625009.2 False 1498 mRNA 0.43 3 77298505 77301052
XM_021625008.2 False 1506 mRNA 0.43 3 77298512 77301052
XM_021625011.2 True 1594 mRNA 0.45 4 77298562 77301052

Neighbor

gene id symbol gene type direction distance location
LOC110538293 LOC106601351 coding upstream 177689 77112044 ~ 77120816 (+)
LOC118937747 NA coding upstream 219915 77070872 ~ 77078590 (+)
nfil3-2 LOC106607079 coding upstream 285577 77000960 ~ 77012928 (+)
LOC110538297 LOC106601356 coding upstream 302234 76991920 ~ 76996271 (+)
LOC110538299 LOC106601357 coding upstream 326416 76968770 ~ 76972089 (+)
LOC110538285 LOC106601344 coding downstream 158 77301210 ~ 77315227 (+)
LOC110538960 LOC106607023 coding downstream 19157 77320209 ~ 77354182 (+)
LOC110538283 LOC106607024 coding downstream 62020 77363072 ~ 77420925 (+)
LOC110538464 LOC106607025 coding downstream 131530 77432582 ~ 77445522 (+)
si:ch211-106h11.1 LOC106607027 coding downstream 177853 77478905 ~ 77484829 (+)
G1113647 NA non-coding upstream 69852 77227975 ~ 77228653 (+)
G1113639 NA non-coding upstream 76880 77221361 ~ 77221625 (+)
G1113407 LOC106601347 non-coding upstream 126815 77167391 ~ 77171690 (+)
G1113381 NA non-coding upstream 187429 77110807 ~ 77111076 (+)
G1113270 NA non-coding upstream 319607 76976334 ~ 76978898 (+)
G1113807 NA non-coding downstream 165866 77466918 ~ 77467150 (+)
G1113808 NA non-coding downstream 166407 77467459 ~ 77468076 (+)
G1113739 LOC106607028 non-coding downstream 192589 77493641 ~ 77496003 (+)
LOC110538313 LOC106601291 other upstream 566387 76730857 ~ 76732118 (+)
LOC100136171 LOC100136171 other upstream 828278 76464742 ~ 76470326 (+)
G1112082 NA other upstream 997978 76300060 ~ 76300527 (+)
G1112079 NA other upstream 1010003 76287598 ~ 76288502 (+)
G1111968 LOC106601158 other upstream 1402632 75895612 ~ 75895873 (+)
G1113861 LOC100136012 other downstream 290669 77591721 ~ 77624996 (+)
G1113968 NA other downstream 473166 77774218 ~ 77819621 (+)
LOC110538485 smarca4 other downstream 544465 77845399 ~ 77864078 (+)
LOC110486564 LOC106601427 other downstream 1748953 79049969 ~ 79053051 (+)
G1115550 LOC106601417 other downstream 1773614 79074666 ~ 79077216 (+)

Expression


Co-expression Network