si:ch211-106h11.1 (LOC106607027)


Basic Information

Item Value
gene id si:ch211-106h11.1
gene name LOC106607027
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 77478905 ~ 77484829 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625304.2
TAAGCAcaaaaggcactgtattttttttgtagtcaattattttttacatttttgttttgtttgtaatAATACTTTTTGGGGGGGAGTAGGACTAGGCTACAGGCAGAGCCTTCTATTGCAATAAAAGGCTTTGGCTACGGACTGGGGTGAAATTAATTAGATTTCTTCTCAACATCTCACTTCGTCATGACAACCGTTAAAGAGCCAAAACCCCGTGTTTGTCACCACTGCTGCGGCGCTCCACTCTCAACACCAGTCACCGCCCGCAATAGAAAAAGTTTTTTATGAAGTTTCATTCTTGAGAGAACCGGACCGCACCGGACTAGTCACCCCAGAGCGATGCACCGCGCAATTCACTGTTGTTTTTCTAGACACCGTTTGAGCAGCATCCAGACAAGAAAACGTTTTTGTGAAAGAAAAAGCTGTCTGACAAACGTGCTGTGGTTACATTTAAATCTCCTACACCAGTGTTTTTTAAATGCTGGTCTGGTCCCACTGGCGGGCTACAACTGATTCCTTTCAGGTCTGGATCCTGGCACAATAAGCATTGGAGTTGGTGACAGCAGAATCACTATTCCACCATTTTGTTATTCAGTCCTTCACCTAGCATAAGCCATGTTCAGCCTGTCAGAGCTGGCCTCTCTGAGTGAGCGTCAGGGCAGCTCCAAGCTGCTGAAGCCCTGGTGGGAGGTCTTCATGGAGTACCTGGTGGTGCTGATGCTCATGGTATCTGTGTTGTCAGGCACCCTGTTGCTATCTCGAGACAGGGTGGTGTGTCTCCCCCTGGACCTCACTACCACCCCTACTAACCAGAACACCTCCTCCAGCAGTGGTGCCGTACCTCAACCCCACCCCCCTAACAGGCCCCCCACCAAAGCATCCCCCCTACCAGCCAACCCTTGGACCCCTGCTAGGGGCAGACGCACCCACCTGGACTACCAGCAGTATGTCTACATTAGCCAGGTGTGCTACCACGAGGCCCTGCCCTGGTACTCCCGCTTCTTCCCCTATGTGGCTCTACTCCAGTCCCTGGTGCTATTGGCCAGCGGTTGCTTCTGGTTCCACTTCCCCCTCACCTCCGCCCGCATAGAGCACTTCCTGACCATCCTGGCCAAGTGCTGTGAGTCTCCCTGGACCTCCCGCGCCCTGTCCCATGCCGCCCgccaggaggagggaggggaggagacaggcccCCAGGATCTCCAAATGCCTCCTCCTACTCTCCTGTCTTCACTCTCCGTATCCCGCAACCGCCAGTCCAGCCTGGACTCGGGGACAGACAGCCCCCTGCTGGTGAGATCTGATAGCGCGTCCACTGCCGCCCCTCCCTCGCCctgcccctccactctctcccggACCTCCTCCCTGTCCACCATGTCTCTGTCCCGGGCCCATGTCCCGGCTTCCAAATCCCCTGTGGTGCTGGATGGTTCACGGCGGGTTGCCAGTTTGGACCGGAGTGACGGGGAGCAGGCCAGGGCACTGTTCGAGAGGGTGCGCCGCTTCCGCTCCCACTGTGAGGACTCTGAAGTTATCTACAAGGTGTACTTGGCCCAGACAGTGTTCAAGCTGCTGCTGGTGGTGCTGATAGTGGGCTACACCACTCCTCTGATGAGCTCCATCTCGTTCACCCACACCTGCCTGCCCCAGGCCCATGCCCTGACTGGCTACAGTGCCTTTGAGTGTACCCATGCCCTGGCCTCTGTCCTCCACAAGTTGCTGCTGGCCTACATCAGCCTGGTGGGGCTCTTTGGCCTGCTGAGCATCTACACCCTCAGCTGGATCCTCCACAGCTCCCTGCGTCAATACTCCTTTAACAAACTGAGGGAGCTGGGCTCCATGAGGGATGTCCCTGACTTATGTAATGACCTGGCCTTCCTGTTACACATGGCTGACCAGTACGACCCCCTACTGGCCCAGCGTCTTTCCGTCTTCCTGTCACCCGTCAGCGAGACACGCCTGCTGGAGGAGAGCCTGGAGAGGCGCTGGGGTGCCGAGAGGCTACGCTCCATGACCACGGTCGACCCAGAGGGACGGCCCCTGCTGCAGCTGGTGGCCCTGCCGCGCCTGCCCCCTGCCCTCTTTACCCTCAGCCAGCTGGTAGTGCTCAAGCTGGAGCTCATCACGGACGCCAAGCTCCCCGCACAAGTGGCCAACATGACCTCACTCAGGGAGCTTCATTTGTACCACTGTACTGCAGCCATGCAGCCTGGTTCCCTGGTGGTTCTGCAGGAGCGTCTGGAGGCCCTGCACCTCACCTTCACCCAGGCTGCAGAGATCCCTGGCTGGGTCTACTCTCTCCGCGGCCTGCAGGAGCTGCACCTTTCTGGCCGACTGGGCTGCGAGGGCGGGGTGGGCCGTGGCTGGGCCCTGGGAAGCCTCCGGCAGCTCCGTCACCTCCGGGTGCTGGTCCTGAGGGGCATGCTGCAGCGTGTGCCCGGGGAGCTGGGGGAGGTGGCAGGGAGCCTGGTGAGGCTGGAGATCCACAACGAGGGCTCCAGGCTGCTGGTGCTGACGGGCCTGCGGCGTGTGGCCGGCCTGACCGAGCTGCAGCTGCAGGACTGCCACTTGGAGCGCCTGCCCTCTGCCCTGCTGGCCCTCACCAGCCTGCGCACCCTGGACCTGCAGCACAACAGCCTGCGCACCCTGGAGGAGCTCCTAGGGCTGGCACACCTCCGCCGCCTCTCCTGCCTCAGGCTGGCCCACAACCGTATTCTGGCCCTACCGGCTAGTGTTGGTGTACTGCGTGCTCTGGAGCTCCTGGACCTGGGGTACAACCAGCTCCAGAGCCTTCCCCTGGCCCTCTTCAACCTCCACCACCTACGTCGCCTCCTACTGGCTGGAAACCTGCTGGACGAGCTGCCAGCAGAGGTAGGGGCGCTGACATTTCTCACCGAGTTGGACCTGAGTGGGAACAGGCTGGAGAGCCTGCCTCCAGAGCTCTTCAGTCGCTGTTTGGAGCTGCGGAGCCTGAATGTATCCCACAACTCCCTGGGTTCCCTGCCTCCAGGGCTGAGCAACCTGAGTCACCTGTCCCGCCTGGACCTGCGCAGCAACAGTCTAGAAGAGCTGCCCATGGAGCTGGGCTGCTGTTCAGGACTGCATGGAGAAGGTCTgctggtggaggactggctgctccatgcactGCCACGACATGTGAAGGAGTTCCTAACCCAGTCTGGCTCTCATACCGGCAAATCCTTAGAATCACACTCCCGTCCAGACTCAGATAGCTTCCCCTACTTCTCGGCTACCCAGTGGAGTTTCTCCTCTGCTCTGGAATCACGGATATAGAATTAGAGATGAATATTGTCTAACCATTCATAGAATACATTCAACATcttgtagtgtctgtattgtttcCGACAAATCATATATTTTTTACTGCTTATTTTATTTCTaactacattttattttttaacaccTCTTTTTCTTCTTGACCACTCTTTTCTATGTTTACTTGTTGAGTTTGTGGGGTACATCACTGCAGCTCTGACACATTCACAATCTTCCTAGACAAAAAGTGATTTTACATGAAAGTTCATAGACTTTGCTGCAGTGAAATGTTTGATGCCTTATGTTCCTGTACAGTTTATATAACATCCACATACGTAACCCTATGGAAAAACTGAGAAGTCTTTGCTTCCACTTTGAGAGTCCTCTACTCATTTCATTTCAAGGTAAAAACAGTATTTTGAAGGAGGCTGCGCTGGATGAATGCATGTCCTGCTACATTGGATTAGACATTGACATGGAACGATCGTTATTATCCCCATGGCGGAGCTCAGAGATCCCTCCACAGGCTTACTGAAATTCTGTGCTTTCTGGGACTTGTTTGTCTGAGGAGGACAATACCCTGAGCTCCAATGAGCTTATGAAGTTCAAAGGCCTAAACTGTACATGTGGAAAGACTGAAATTGGACAGACTGAAAGGACTTAAAAGACCAATAAGATTAACATTAACATTTATTCCTACTTGTTTTGCACATATTTAATCTTCAAAAAAGTCAAATTAATCTTACTAGCATTGGGTGCAACCTTTTGTGAAACTAATACTAACGTGAAACTAATACAATAGTGTGCTTGTTCAGAACATTAGCACATTATTGTGACTATAGAAATTATGAAAACTTGTTTTTAACTTTTTTGTATGGCTTATAATATTAATTACAGTACATACCCTTA
>TU1266420
CCCTCACCAGCCTGCGCACCCTGGACCTGCAGCACAACAGCCTGCGCACCCTGGAGGAGCTCCTAGGGCTGGCACACCTCCGCCGCCTCTCCTGCCTCAGGCTGGCCCACAACCGTATTCTGGCCCTACCGGCTAGTGTTGGTGTACTGCGTGCTCTGGAGCTCCTGGACCTGGGGTACAACCAGCTCCAGAGCCTTCCCCTGGCCCTCTTCAACCTCCACCACCTACGTCGCCTCCTACTGGCTGGAAACCTGCTGGACGAGCTGCCAGCAGAGGTAGGGGCGCTGACATTTCTCACCGAGTTGGACCTGAGTGGGAACAGGCTGGAGAGCCTGCCTCCAGAGCTCTTCAGTCGCTGTTTGGAGCTGCGGAGCCTGAATGTATCCCACAACTCCCTGGGTTCCCTGCCTCCAGGGCTGAGCAACCTGAGTCACCTGTCCCGCCTGGACCTGCGCAGCAACAGTCTAGAAGAGCTGCCCATGGAGCTGGGCTGCTGTTCAGGACTGCATGGAGAAGGTCTgctggtggaggactggctgctccatgcactGCCACGACATGTGAAGGAGTTCCTAACCCAGTCTGGCTCTCATACCGGCAAATCCTTAGAATCACACTCCCGTCCAGACTCAGATAGCTTCCCCTACTTCTCGGCTACCCAGTGGAGTTTCTCCTCTGCTCTGGAATCACGGATATAGAATTAGAGATGAATATTGTCTAACCATTCATAGAATACATTCAACATcttgtagtgtctgtattgtttcCGACAAATCATATATTTTTTACTGCTTATTTTATTTCTaactacattttattttttaacaccTCTTTTTCTTCTTGACCACTCTTTTCTATGTTTACTTGTTGAGTTTGTGGGGTACATCACTGCAGCTCTGACACATTCACAATCTTCCTAGACAAAAAGTGATTTTACATGAAAGTTCATAGACTTTGCTGCAGTGAAATGTTTGATGCCTTATGTTCCTGTACAGTTTATATAACATCCACATACGTAACCCTATGGAAAAACTGAGAAGTCTTTGCTTCCACTTTGAGAGTCCTCTACTCATTTCATTTCAAGGTAAAAACAGTATTTTGAAGGAGGCTGCGCTGGATGAATGCATGTCCTGCTACATTGGATTAGACATTGACATGGAACGATCGTTATTATCCCCATGGCGGAGCTCAGAGATCCCTCCACAGGCTTACTGAAATTCTGTGCTTTCTGGGACTTGTTTGTCTGAGGAGGACAATACCCTGAGCTCCAATGAGCTTATGAAGTTCAAAGGCCTAAACTGTACATGTGGAAAGACTGAAATTGGACAGACTGAAAGGACTTAAAAGACCAATAAGATTAACATTAACATTTATTCCTACTTGTTTTGCACATATTTAATCTTCAAAAAAGTCAAATTAATCTTACTAGCATTGGGTGCAACCTTTTGTGAAACTAATACTAACGTGAAACTAATACAATAGTGTGCTTGTTCAGAACATTAGCACATTATTGTGACTATAGAAATTATGAAAACTTGTTTTTAACTTTTTTGTATGG
>TU1266421
CTGTTCAGGACTGCATGGAGAAGGTCTgctggtggaggactggctgctccatgcactGCCACGACATGTGAAGGAGTTCCTAACCCAGTCTGGCTCTCATACCGGCAAATCCTTAGAATCACACTCCCGTCCAGACTCAGATAGCTTCCCCTACTTCTCGGCTACCCAGTGGAGTTTCTCCTCTGCTCTGGAATCACGGATATAGAATTAGAGATGAATATTGTCTAACCATTCATAGAATACATTCAACATcttgtagtgtctgtattgtttcCGACAAATCATATATTTTTTACTGCTTATTTTATTTCTaactacattttattttttaacaccTCTTTTTCTTCTTGACCACTCTTTTCTATGTTTACTTGTTGAGTTTGTGGGGTACATCACTGCAGCTCTGACACATTCACAATCTTCCTAGACAAAAAGTGATTTTACATGAAAGTTCATAGACTTTGCTGCAGTGAAATGTTTGATGCCTTATGTTCCTGTACAGTTTATATAACATCCACATACGTAACCCTATGGAAAAACTGAGAAGTCTTTGCTTCCACTTTGAGAGTCCTCTACTCATTTCATTTCAAGGTAAAAACAGTATTTTGAAGGAGGCTGCGCTGGATGAATGCATGTCCTGCTACATTGGATTAGACATTGACATGGAACGATCGTTATTATCCCCATGGCGGAGCTCAGAGATCCCTCCACAGGCTTACTGAAATTCTGTGCTTTCTGGGACTTGTTTGTCTGAGGAGGACAATACCCTGAGCTCCAATGAGCTTATGAAGTTCAAAGGCCTAAACTGTACATGTGGAAAGACTGAAATTGGACAGACTGAAAGGACTTAAAAGACCAATAAGATTAACATTAACATTTATTCCTACTTGTTTTGCACATATTTAATCTTCAAAAAAGTCAAATTAATCTTACTAGCATTGGGTGCAACCTTTTGTGAAACTAATACTAACGTGAAACTAATACAATAGTGTGCTTGTTCAGAACATTAGCACATTATTGTGACTATAGAAATTATGAAAACTTGTTTTTAACTTTTTTGTATGGCTTATAATATTAATTACAGTACATACCCTTATTGGTGGATTTGGGACTATTTTATTGCATCACCTACAACGTAATACAAAACACATTCCAATGAATCGTTGCAAAAACATATTATTGAGTAAATTAAGTGTTTGTGTTCTTCTGTACACAAGACCATGGTCAATCTTAGTGACGGAATTAATTTAATAAACTATGAAAGTC

Function

NR:

description
volume-regulated anion channel subunit LRRC8D-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625304.2 False 4185 mRNA 0.54 5 77478905 77484659
TU1266420 False 1558 lncRNA 0.46 1 77483071 77484628
TU1266421 True 1266 lncRNA 0.37 1 77483564 77484829

Neighbor

gene id symbol gene type direction distance location
LOC110538464 LOC106607025 coding upstream 33383 77432582 ~ 77445522 (+)
LOC110538283 LOC106607024 coding upstream 57980 77363072 ~ 77420925 (+)
LOC110538960 LOC106607023 coding upstream 124723 77320209 ~ 77354182 (+)
LOC110538285 LOC106601344 coding upstream 163678 77301210 ~ 77315227 (+)
LOC110538287 LOC106601346 coding upstream 177853 77298505 ~ 77301052 (+)
LOC110538469 ddx39 coding downstream 679 77485338 ~ 77492407 (+)
LOC110538471 LOC106601338 coding downstream 27515 77512174 ~ 77518590 (+)
LOC110538472 LOC100380669 coding downstream 41660 77526319 ~ 77562873 (+)
LOC110538473 LOC106601335 coding downstream 78532 77563191 ~ 77569888 (+)
LOC110538474 LOC106607032 coding downstream 87280 77571939 ~ 77577342 (+)
G1113808 NA non-coding upstream 10829 77467459 ~ 77468076 (+)
G1113807 NA non-coding upstream 11755 77466918 ~ 77467150 (+)
G1113647 NA non-coding upstream 250252 77227975 ~ 77228653 (+)
G1113639 NA non-coding upstream 257280 77221361 ~ 77221625 (+)
G1113739 LOC106607028 non-coding downstream 8982 77493641 ~ 77496003 (+)
G1113820 NA non-coding downstream 13571 77498230 ~ 77498477 (+)
G1113821 LOC108236100 non-coding downstream 14171 77498830 ~ 77499308 (+)
G1113822 LOC106601311 non-coding downstream 15010 77499669 ~ 77500113 (+)
G1113823 NA non-coding downstream 16473 77501132 ~ 77501555 (+)
LOC110538313 LOC106601291 other upstream 746787 76730857 ~ 76732118 (+)
LOC100136171 LOC100136171 other upstream 1008678 76464742 ~ 76470326 (+)
G1112082 NA other upstream 1178378 76300060 ~ 76300527 (+)
G1112079 NA other upstream 1190403 76287598 ~ 76288502 (+)
G1111968 LOC106601158 other upstream 1583032 75895612 ~ 75895873 (+)
G1113861 LOC100136012 other downstream 107062 77591721 ~ 77624996 (+)
G1113968 NA other downstream 289559 77774218 ~ 77819621 (+)
LOC110538485 smarca4 other downstream 360858 77845399 ~ 77864078 (+)
LOC110486564 LOC106601427 other downstream 1565346 79049969 ~ 79053051 (+)
G1115550 LOC106601417 other downstream 1590007 79074666 ~ 79077216 (+)

Expression


Co-expression Network