LOC110538477 (LOC106607035)


Basic Information

Item Value
gene id LOC110538477
gene name LOC106607035
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 77610820 ~ 77612826 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625327.2
GCTGAAGTAAATGATAAGCCGAAATTCAACATGGCCGATAACATGTGAAAGAAAACCACATCTGGACAAATGTAGCCAATATATCAGTAATATACTTAGCTTTGAGAGTCgtttgaaaaaaaaaattatatatctAATGTGGTTGATTTGTGTTTTGCACTAGTTTAGCTACTCATGACACAATTGTTTGGTCATTAGCTAGTTGACATTTTTCgaatagctagctagatacaacgctaacgttagctagccaccAACAACAAGcctgcgttttttttttttgccgtgAGGACCTGTGCTAGCTCGCTGGGAGACGGACAAGTGTGGCTCCGATTAATTTATGGATTTACACGTGTTTAATTAGACGGCTTCGTATGCTAGCTACTTTGCCTCtaaatttgttgttttgtttggggTTCGGGTGGAGTCTCTGTCACCGATagcattttttttgtcaagtAGCTAGCCGGCTTTAGTTTACGTTGACACAGAACGACCAGAGAGCACACCACTAGTTGCAGAAAGGCCTAAAGGAACTGAGCCCTTCTACATAAAAAAAGCTAACATGGATCCGAAGCGTGGGTACAGCAGAAGACATCAAAACAGCAGCGATTCGAGCAGTAACAGCCCGGGGTCGCCAGCCAGTCCTGCACCGGGAGTCAGCAAAGCAGCTGCGGCCAATTCATTTGCTAATGATGGAAGCTTTATGGAGATGTTCAAGAAAAAAATGGAGGAAGAAAAAATGAAAAAAGAAATGGACCAAGGATGCGGTGATAAAAGTACTGCTGACGGACAGTCGACACAGGAAAAGAAGACTACAAGTGTGACCAGCTTTGTGGGGAAGCGCAGAGGTGGCTCTAAATTAGCCCTCAAGACTGGCATGGTTGCGAAGAAACAGAAAGTGGACCCTGAGATGGAGGGCAAGGGGGATGCCTGGACAAAATACATGGCAGAGGTGAAAAAGTATAAAGCACACCAGTGTGGCGATGATGACAAAACCAGGCCTCTGGTCAAATAGACTCTGGAGGACCTTTTAGAAAGAAACCAACAGTGATTGGGACAGCCATCAAACCTTCTGCATACTGCCAGACTCTTTACAGCTGTAGAAGCGATCACCTATTTTAATGTTTAATCTTGtttttcctgttttgtttttGGGTTTAAATGAATGTTAGCTTGTGTGCTGTATGGGGCAATAGCATTTTGATGTGGAGTTAAAGGCTTTTGGGATTGTATTGGAGTACATTACTGGTCCTGCTTGATTATTTAAGGGTTATACTGTCAGGATTGTAGCTCCTGGAATAAGTTGAGTAATTTTTTGAGTTTGAGATGGCATTTGTCAGCTGAAGTTGAAATTATAAGCACCGCCCATTGACCTGGGTGTGTTGGCTTTGTCTGGACCCAGAACCCTAAAGAACCTCTGGTGGAGGCACAGAAAGTTGTGCAGCCTTGTTGATTAATTTGACCTTTTGGGCTGCTTTGGATAAGCAACCGTCAGGTAGTGTCTCCGGTTAGATTGTTACCCGTCAAATAAACATTTGATTAATCAGA
>TU1267443
CAACATGGCCGATAACATGTGAAAGAAAACCACATCTGGACAAATGTAGCCAATATATCAGTAATATACTTAGCTTTGAGAGTCgtttgaaaaaaaaaattatatatctAATGTGGTTGATTTGTGTTTTGCACTAGTTTAGCTACTCATGACACAATTGTTTGGTCATTAGCTAGTTGACATTTTTCgaatagctagctagatacaacgctaacgttagctagccaccAACAACAAGcctgcgttttttttttttgccgtgAGGACCTGTGCTAGCTCGCTGGGAGACGGACAAGTGTGGCTCCGATTAATTTATGGATTTACACGTGTTTAATTAGACGGCTTCGTATGCTAGCTACTTTGCCTCtaaatttgttgttttgtttggggTTCGGGTGGAGTCTCTGTCACCGATagcattttttttgtcaagtAGCTAGCCGGCTTTAGTTTACGTTGACACAGAACGACCAGAGAGCACACCACTAGTTGCAGAAAGGCCTAAAGGAACTGAGCCCTTCTACATAAAAAAAGCTAACATGGATCCGAAGCGTGGGTACAGCAGAAGACATCAAAACAGCAGCGATTCGAGCAGTAACAGCCCGGGGTCGCCAGCCAGTCCTGCACCGGGAGTCAGCAAAGCAGCTGCGGCCAATTCATTTGCTAATGATGGAAGCTTTATGGAGATGTTCAAGAAAAAAATGGAGGAAGAAAAAATGAAAAAAGAAATGGACCAAGGATGCGGTGATAAAAGTACTGCTGACGGACAGTCGACACAGGAAAAGAAGACTACAAGTGTGACCAGCTTTGTAAGGGGTTTGGCTGTTGTTAGCTATAGATTgtagccaatggcaatgtctcAACTAAcaaattaaacattttttttatccacCACACACAGCTCACGTTAGTGTATAGTTACATCACCATAGAGGGATACATTCACACGTGAAGAGGTGCACTGCAATGTCGCCAACAAGTAACCTGAGATCCACATCAGGTCTAGACATTGGAAAGCATTCATTAGCTACTCAACTAAAGGAATGTTTTCGGTGATAACATAGGCTTTTTCTTTGTTCTCTCGTTTTGTGTAGTCTCCATCATTGGCAGTCCACCTGCAAGGGCTCGTATAACGGTTTCAGTCTTCTATCCCCTAACCCAGGTGGGGAAGCGCAGAGGTGGCTCTAAATTAGCCCTCAAGACTGGCATGGTTGCGAAGAAACAGAAAGTGGACCCTGAGATGGAGGGCAAGGGGGATGCCTGGACAAAATACATGGCAGAGGTGAAAAAGTATAAAGCACACCAGTGTGGCGATGATGACAAAACCAGGCCTCTGGTCAAATAGACTCTGGAGGACCTTTTAGAAAGAAACCAACAGTGATTGGGACAGCCATCAAACCTTCTGCATACTGCCAGACTCTTTACAGCTGTAGAAGCGATCACCTATTTTAATGTTTAATCTTGtttttcctgttttgtttttGGGTTTAAATGAATGTTAGCTTGTGTGCTGTATGGGGCAATAGCATTTTGATGTGGAGTTAAAGGCTTTTGGGATTGTATTGGAGTACATTACTGGTCCTGCTTGATTATTTAAGGGTTATACTGTCAGGATTGTAGCTCCTGGAATAAGTTGAGTAATTTTTTGAGTTTGAGATGGCATTTGTCAGCTGAAGTTGAAATTATAAGCACCGCCCATTGACCTGGGTGTGTTGGCTTTGTCTGGACCCAGAACCCTAAAGAACCTCTGGTGGAGGCACAGAAAGTTGTGCAGCCTTGTTGATTAATTTGACCTTTTGGGCTGCTTTGGATAAGCAACCGTCAGGTAGTGTCTCCGGTTAGATTGTTACCCG
>TU1267444
CAACATGGCCGATAACATGTGAAAGAAAACCACATCTGGACAAATGTAGCCAATATATCAGTAATATACTTAGCTTTGAGAGTCgtttgaaaaaaaaaattatatatctAATGTGGTTGATTTGTGTTTTGCACTAGTTTAGCTACTCATGACACAATTGTTTGGTCATTAGCTAGTTGACATTTTTCgaatagctagctagatacaacgctaacgttagctagccaccAACAACAAGcctgcgttttttttttttgccgtgAGGACCTGTGCTAGCTCGCTGGGAGACGGACAAGTGTGGCTCCGATTAATTTATGGATTTACACGTGTTTAATTAGACGGCTTCGTATGCTAGCTACTTTGCCTCtaaatttgttgttttgtttggggTTCGGGTGGAGTCTCTGTCACCGATagcattttttttgtcaagtAGCTAGCCGGCTTTAGTTTACGTTGACACAGAACGACCAGAGAGCACACCACTAGTTGCAGAAAGGCCTAAAGGAACTGAGCCCTTCTACATAAAAAAAGCTAACATGGATCCGAAGCGTGGGTACAGCAGAAGACATCAAAACAGCAGCGATTCGAGCAGTAACAGCCCGGGGTCGCCAGCCAGTCCTGCACCGGGAGTCAGCAAAGCAGCTGCGGCCAATTCATTTGCTAATGATGGAAGCTTTATGGAGATGTTCAAGAAAAAAATGGAGGAAGAAAAAATGAAAAAAGAAATGGACCAAGGATGCGGTGATAAAAGTACTGCTGACGGACAGTCGACACAGGAAAAGAAGACTACAAGTGTGACCAGCTTTTCTCCATCATTGGCAGTCCACCTGCAAGGGCTCGTATAACGGTTTCAGTCTTCTATCCCCTAACCCAGGTGGGGAAGCGCAGAGGTGGCTCTAAATTAGCCCTCAAGACTGGCATGGTTGCGAAGAAACAGAAAGTGGACCCTGAGATGGAGGGCAAGGGGGATGCCTGGACAAAATACATGGCAGAGGTGAAAAAGTATAAAGCACACCAGTGTGGCGATGATGACAAAACCAGGCCTCTGGTCAAATAGACTCTGGAGGACCTTTTAGAAAGAAACCAACAGTGATTGGGACAGCCATCAAACCTTCTGCATACTGCCAGACTCTTTACAGCTGTAGAAGCGATCACCTATTTTAATGTTTAATCTTGtttttcctgttttgtttttGGGTTTAAATGAATGTTAGCTTGTGTGCTGTATGGGGCAATAGCATTTTGATGTGGAGTTAAAGGCTTTTGGGATTGTATTGGAGTACATTACTGGTCCTGCTTGATTATTTAAGGGTTATACTGTCAGGATTGTAGCTCCTGGAATAAGTTGAGTAATTTTTTGAGTTTGAGATGGCATTTGTCAGCTGAAGTTGAAATTATAAGCACCGCCCATTGACCTGGGTGTGTTGGCTTTGTCTGGACCCAGAACCCTAAAGAACCTCTGGTGGAGGCACAGAAAGTTGTGCAGCCTTGTTGATTAATTTGACCTTTTGGGCTGCTTTGGATAAGCAACCGTCAGGTAGTGTCTCCGGTTAGATTGTTACCCG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625327.2 False 1551 mRNA 0.43 3 77610820 77612826
TU1267443 False 1853 lncRNA 0.43 2 77610845 77612800
TU1267444 True 1568 TUCP 0.44 3 77610845 77612800

Neighbor

gene id symbol gene type direction distance location
LOC110538468 LOC106601163 coding downstream 109380 77493593 ~ 77501440 (-)
LOC110539172 LOC106607008 coding downstream 132333 77469857 ~ 77478487 (-)
LOC110538465 LOC106607026 coding downstream 160473 77445524 ~ 77450347 (-)
pglyrp6 LOC106601345 coding downstream 308615 77290430 ~ 77302205 (-)
si:ch211-194b1.1 LOC106601342 coding downstream 321234 77270633 ~ 77289586 (-)
LOC110538478 LOC106607036 coding upstream 20941 77633767 ~ 77649740 (-)
LOC110539174 prdx2 coding upstream 91656 77704482 ~ 77719934 (-)
LOC110538481 LOC106607039 coding upstream 106884 77719710 ~ 77727698 (-)
LOC110538484 LOC106607044 coding upstream 213713 77826539 ~ 77829451 (-)
LOC110538489 LOC106601325 coding upstream 286695 77899521 ~ 77904255 (-)
G1114648 rssa non-coding downstream 34579 77575596 ~ 77576241 (-)
G1114649 NA non-coding downstream 37965 77571920 ~ 77572855 (-)
G1114647 NA non-coding downstream 39595 77570744 ~ 77571225 (-)
G1114628 NA non-coding downstream 47950 77560855 ~ 77562870 (-)
G1114691 NA non-coding upstream 50922 77663748 ~ 77663966 (-)
G1114693 NA non-coding upstream 52828 77665654 ~ 77665882 (-)
G1114695 NA non-coding upstream 53899 77666725 ~ 77667687 (-)
G1114704 NA non-coding upstream 65211 77678037 ~ 77678244 (-)
G1114710 NA non-coding upstream 75821 77688647 ~ 77688948 (-)
G1114604 LOC106607027 other downstream 128308 77482111 ~ 77484731 (-)
LOC110538302 LOC106601359 other downstream 775537 76828760 ~ 76844798 (-)
G1113043 LOC106601201 other downstream 1125535 76484372 ~ 76485285 (-)
LOC110538323 NA other downstream 1177250 76428548 ~ 76478939 (-)
G1113013 NA other downstream 1196609 76412940 ~ 76414211 (-)
G1114714 NA other upstream 81669 77694495 ~ 77695275 (-)
G1114809 smarca4 other upstream 246036 77858862 ~ 77862506 (-)
LOC110538491 il-8 other upstream 353995 77966821 ~ 77984741 (-)
G1116006 NA other upstream 1604725 79217551 ~ 79218123 (-)

Expression


Co-expression Network