LOC110539174 (prdx2)


Basic Information

Item Value
gene id LOC110539174
gene name prdx2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 77704482 ~ 77719934 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939529.1
ATGACTCATGCCACAAAATCGGGTCTAACGCTCTTCTCGCGCCAAACTGCGCATGTGCATGCCGTAAATTCAAAGGCATACCTTGGATATAAAGCGGTTTTTGACGAAAATGTAAATGTGTCAGTTCGACACTTTCACGAAGTTCAGGTGATTGTGGCCTTCAGTGAACGTGCTGAGGAGTTCAGGAAGAGTGACTGTGAGGTCCTGGCAGCCTCTACAGACTCCCACTTCATTCACCTGGCCTGGATCAACACAGAAAATAAACAGGGAGGTCTGGGCCCTATGAAGATCCCTCTGCTGGCTGACCCCACCCAGGCCATCTCCAGGGACTACGGAGtactgaaggaggatgagggCATAGCCTACAGAGGTCTGTTTGTGATTGGTGACAAGGACATCCTGAGGCAGATCCCCATCAATGACCTGCCAGAAGCGTGCTCTGTGGATGAGACACTGTGCCTGGTGCAGGCCTTCCAGCACACTGACAAGTTTGGAGAGgTGTGCCCAGCAGGAAGGAGACCAGGGAGAGACACCATCGTTCCGGACATCCAGAAGAGCAAGGAGTTTTTCTCCAAACAGAAGTGATCCATCCACACCTCCTTAGATGTGCTATGTCTGTCTATACAGGGTACTAACTGAGCACTTACTGTTGTTATTTAGATCGCTGACTGACTGAGTCTGCTGATCGCATTGATTCTGTGTCAACTACACTGTCAGTGGGGATGTGTTTTGTGAGAGTTCTTGAAAATTATATATCATTTGTGCATTAGGCTTGATGTTGATTCCATCACGGGgcttattttactgctgttctctaatgattttttatttttaacttaTCTAACTTCTACTTAACACATATTTTTAtgaaaactgcattgttagttaagggcttgtaattaagcatttcactgtaaggtaaacatgttgtattcggtgcatgtgacaaataacatttgatttgttttgattacAATTCAAACAGTGCCATGTGAGTATGAACTGGAATGTTAATAAAAAAGCAGAATT
>TU1267504
CTGACTCTCAACAACAGGTTTTCATGTCTCAAGAAATCCAAATGTCAGCTTTCTTAGTCGAGACACACTTTCATTTTGTGGCAAGGCTAGGCTTATAGTACTCAAACATTAATTTTACTTTAAGCTCAATTAATGCCCTTCTCTAAATATTAAGTCTATTGGCCTGTAATGCCGTTAACCAAGGTTTTCCACTCTGATTCACGTCAGGTGATTGTGGCCTTCAGTGAACGTGCTGAGGAGTTCAGGAAGAGTGACTGTGAGGTCCTGGCAGCCTCTACAGACTCCCACTTCATTCACCTGGCCTGGATCAACACAGAAAATAAACAGGGAGGTCTGGGCCCTATGAAGATCCCTCTGCTGGCTGACCCCACCCAGGCCATCTCCAGGGACTACGGAGtactgaaggaggatgagggCATAGCCTACAGgccaacgtcatgacactactGTCCAGAGGTCTGTTTGTGATTGGTGACAAGGACATCCTGAGGCAGATCCCCATCAATGACCTGCCAGAAGCGTGCTCTGTGGATGAGACACTGTGCCTGGTGCAGGCCTTCCAGCACACTGACAAGTTTGGAGAGgTGTGCCCAGCAGGAAGGAGACCAGGGAGAGACACCATCGTTCCGGACATCCAGAAGAGCAAGGAGTTTTTCTCCAAACAGAAGTGATCCATCCACACCTCCTTAGATGTGCTATGTCTGTCTATACAGGGTACTAACTGAGCACTTACTGTTGTTATTTAGATCGCTGACTGACTGAGTCTGCTGATCGCATTGATTCTGTGTCAACTACACTGTCAGTGGGGATGTGTTTTGTGAGAGTTCTTGAAAATTATATATCATTTGTGCATTAGGCTTGATGTTGATTCCATCACGGGgcttattttactgctgttctctaatgattttttatttttaacttaTCTAACTTCTACTTAACACATATTTTTAtgaaaactgcattgttagttaagggcttgtaattaagcatttcactgtaaggtaaacatgttgtattcggtgcatgtgacaaataacatttgatttgttttgattacAATTCAAACAGTGCCATGTGAGTATGAACT

Function

symbol description
prdx2 Predicted to enable thioredoxin peroxidase activity. Predicted to be involved in several processes, including cell redox homeostasis; hydrogen peroxide catabolic process; and removal of superoxide radicals. Predicted to be active in cytosol. Is expressed in several structures, including digestive system; hematopoietic system; nervous system; neural tube; and presumptive blood. Human ortholog(s) of this gene implicated in methylmalonic aciduria and homocystinuria type cblC. Orthologous to several human genes including PRDX2 (peroxiredoxin 2).

NR:

description
peroxiredoxin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939529.1 False 1029 mRNA 0.44 6 77704482 77719934
TU1267504 True 1090 TUCP 0.44 4 77704507 77709872

Neighbor

gene id symbol gene type direction distance location
LOC110538478 LOC106607036 coding downstream 54742 77633767 ~ 77649740 (-)
LOC110538477 LOC106607035 coding downstream 91656 77610820 ~ 77612826 (-)
LOC110538468 LOC106601163 coding downstream 203042 77493593 ~ 77501440 (-)
LOC110539172 LOC106607008 coding downstream 225995 77469857 ~ 77478487 (-)
LOC110538465 LOC106607026 coding downstream 254135 77445524 ~ 77450347 (-)
LOC110538484 LOC106607044 coding upstream 106605 77826539 ~ 77829451 (-)
LOC110538489 LOC106601325 coding upstream 179587 77899521 ~ 77904255 (-)
LOC110538491 il-8 coding upstream 246928 77966821 ~ 77984741 (-)
LOC110538494 LOC106607051 coding upstream 299891 78019825 ~ 78022664 (-)
hmgxb4a LOC106601319 coding upstream 306990 78026924 ~ 78033369 (-)
G1114718 NA non-coding downstream 1602 77702590 ~ 77702880 (-)
G1114630 NA non-coding downstream 3806 77698896 ~ 77700676 (-)
G1114711 NA non-coding downstream 14940 77689342 ~ 77689542 (-)
G1114710 NA non-coding downstream 15534 77688647 ~ 77688948 (-)
G1114704 NA non-coding downstream 26238 77678037 ~ 77678244 (-)
G1114747 NA non-coding upstream 32329 77752263 ~ 77752618 (-)
G1114762 NA non-coding upstream 54290 77774224 ~ 77819515 (-)
G1114791 NA non-coding upstream 110059 77829993 ~ 77830288 (-)
G1114793 NA non-coding upstream 112003 77831937 ~ 77832588 (-)
G1114794 NA non-coding upstream 113227 77833161 ~ 77833542 (-)
G1114714 NA other downstream 9207 77694495 ~ 77695275 (-)
G1114604 LOC106607027 other downstream 221970 77482111 ~ 77484731 (-)
LOC110538302 LOC106601359 other downstream 869199 76828760 ~ 76844798 (-)
G1113043 LOC106601201 other downstream 1219197 76484372 ~ 76485285 (-)
G1114809 smarca4 other upstream 138928 77858862 ~ 77862506 (-)
G1116006 NA other upstream 1497617 79217551 ~ 79218123 (-)
G1116120 NA other upstream 1734196 79454130 ~ 79454620 (-)
LOC110538563 LOC106580481 other upstream 2480573 80200038 ~ 80201563 (-)
LOC110538481 LOC106607039 coding upstream 9838 77719710 ~ 77727698 (-)
G1114722 NA non-coding upstream 4219 77714091 ~ 77714361 (-)
G1114729 NA non-coding upstream 7307 77717179 ~ 77717405 (-)
G1114730 NA non-coding upstream 7853 77717725 ~ 77718306 (-)

Expression


Co-expression Network