LOC110538491 (il-8)


Basic Information

Item Value
gene id LOC110538491
gene name il-8
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 77966821 ~ 77984741 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938584.1
acaagcatgggaaacagtgtttacaaccctttacaatgaagatctgtgaaggtaTTTCGATTTTAAGGAATTATCTTTtcaagacagggtcctgaaaaagggacatttctttttttgctgagtttatacaaAATACCCCATCAATCTTATTACATTTCATTTAAAGACACACTTCCGCTCATAGATGGGGCTGAATGGTCATACGTGGTGTGATGTCGTAGTTGTACAGGCCAGATGTGTTGGTTCATGTTGAATTTTTTTCATGTGTGTAGTTCCCACGGCAAGCTCTGGCACCCTGCCTGTCTGGAGGAATGTAATTTCAGTTACTCAATGTTTGCTTATATTGTATTGTTTGTCACTTCCTGTTTTAGTGAATGTAATGTTTATAACAGAACATTATATTTAAAGTGTGGACAGAGATTGTGATATTGACTGAGTATACCAAAGATTAGGaaacccccttttgccctcagaacacccTCAATTAATCGAGGCATAGACTCCTGAAGGTGTCGAAAAACATCAGTCAGCTTCAGAGGCCCGGGTTGTATAAAGTAGCCCTACTTGCAATAAAATGTAGTTCTTTTAATTAAAGATTATTGAATTTAATTAAATTGGATGAAGTTCAAGCATTGTGTTGTCTGCCTGCTTTTCCCTACTATGTCTTCATTGAAACTCCCCATCATACAGTAGGTGAGcgaacatacagtatatcatgcCCCTTTCAATGGTAGAACAAAATAAATAGGGTCTGTGGCCAGGTTGTCAGGGTAAACTACTGGCCCTCATATCATAGTTAGGTTCAGAAGTTTTGTGGTCTGTTGAGCCTAATCACTGGCGATGATGATTCTTTGTTGAAACGTTCCATCCTGTGTGACGAATGTCTTGTGACACAATACGCATATTTCAGCCATTTGTCCACAGCTAGGTTGCATTAGAAATGCTCTATTAGTTGATGTCCGTTATGATTCCAATGTACTCGTCTGAAATGTGTTAATACAAAGTTGTCAGTGAGCAATATAGCGCTGTGCACTTAACTCATATGAATAGTTTAGAAAATAAATCTGTTTAGTAAAGAATCATCAATGCATTCAAAACTCAAGCGTTTCATAAAATTTCATAACACTTTAACTTGGCATTTTTCCATCTGTATGATGTGACAGAGGTTGTTCCATGAGAAAGCTGTTGAGAAATCAAAAtcaacaagcccttaaccaacaatgcagttttaagaaaatagagttaagaaaatatttactcaataaactaaagtaaaaaataaaatctataaataagtaacacaataaaataacaataatgagggggtaccggtatcaAGTCAATGTGTCTTGCTGTCACTCATGAGTTAAAGTGAGAAATTCCCTACCTCAATAAGCCCTCAAAGTCAGCCAAATCCCAGATTTCACAATCTTTCACATGCCACAATGACTCACTCCCAGGACTCGGCTTTAAAACAGCTCTCTCCCCACAGTGGCAGACAAAGCGGTTTTCTTCTCACAGCGGCAGATTTGAACTCACCACAGacagagaaggaaggaaagaaagaaagaactcGCAACTGGactgaaaaagagagaaagatataacAATAAAACACTTTACAGTACCTTTTACCAGCTAGATAACAACCTTAGACTTTATTAGAGGATTTCTAGTAGGATCATCTGTAACCCCAAGATGAGCATCAGAATGTCAGCCAGTCTTGTCGTTGTGCTCCTGGCCCTCCTGACCATTACTGAGGGGATGAGTCTGAGAGGCATGGGGGCTGACCTGCGATGTCGCTGCATTGAGACGGAGAGCAGACGCATTGGTAAACTCATTAAGAAGGTGGAGATGTTCCCTCCCAGCTCGCACTGCAGagacactgagatcatTGCCACTCTGAGCAAGAGCGGTCAAGAGATTTGTCTGGATGTCAGCGCTCCTTGGGTCAAGAAGGTCATTGAGAAGATGCTGGCCAACAACAAATGAAGAGGGGGAATCATTCAATGAATACTCCGGAATTCTGAACTGTTACAAGATACAAACCAAATAAGTATTTATAAGATTGATAGGCTGAATTCTATCATGTTCAATCCAGGTTGAAATACAATACTAGATTTTGAGTGGCATGAGACTTTTAAATGAAGAGACACTCAGTTTCTTATATACAACCAAGTATTATGTACTAAacttatatttttatttatcaatAGTTTTTATTTTGTTGAGATTTACATACATTCCAGTTGTATTGGAATGATTTCGTAATGAACAACATCACATCCTACTTGACCCTGAAACATATTT
>XM_021625342.2
CTCGCCACAGACAGAGAaggaagaagagaaagaaaaaaaagagaactCGCTACCGGACTGACATTAAGAGAAAGATATAACACTTGTTACCAGCGAGATAACAACACACTTTATTGGAGGATTTCTAGTAGGATCATCTGTAACCCCAAGATGAGCATCAGAATGTCAGCCAGCCTTGTCGTTGTGCTCCTGGCCCTCCTGACCATTACTGAGGAGATGAGTCTGAGAGGCATGGGGGCTGACCTGCGATGTCGCTGCATTGAGACGGAGAGCAGACGTATTGGTAAACTCATTAAGAAGGTGGAGATGTTCCCTCCCAGCTCGCACTGCAGagacactgagatcatTGCCACTCTGAGCAAGAGCGGTCAAGGAGATTTGTCTGGATGTCAGGGCTCCTTGGGTCAAGAAGGTCATTGAGAAGATGCTGGCCAACAACAAATGAAGAGGGGGAATCATTCAATGAATACTCCGGAATTCTGAACTGTTACAAGATACAAACCAAATAAGTATTTATAAGATTGATAGGCTGAATTCTATCATGTTCAATCCAGGTTGAAATACAATACTAGATTT
>XM_021625343.2
tgggaaacagtgtttacaaccctttacaatgaagatctgtgaaggtaTTTCGATTTTAAGGAATTATCTTTtcaagacagggtcctgaaaaagggacatttctttttttgctgagtttatacaaAATACCCCATCAATCTTATTACATTTCATTTAAAGACACACTTCCGCTCATAGATGGGGCTGAATGGTCATACGTGGTGTGATGTCGTAGTTGTACAGGCCAGATGTGTTGGTTCATGTTGAATTTTTTTCATGTGTGTAGTTCCCACGGCAAGCTCTGGCACCCTGCCTGTCTGGAGGAATGTAATTTCAGTTACTCAATGTTTGCTTATATTGTATTGTTTGTCACTTCCTGTTTTAGTGAATGTAATGTTTATAACAGAACATTATATTTAAAGTGTGGACAGAGATTGTGATATTGACTGAGTATACCAAAGATTAGGaaacccccttttgccctcagaacacccTCAATTAATCGAGGCATAGACTCCTGAAGGTGTCGAAAAACATCAGTCAGCTTCAGAGGCCCGGGTTGTATAAAGTAGCCCTACTTGCAATAAAATGTAGTTCTTTTAATTAAAGATTATTGAATTTAATTAAATTGGATGAAGTTCAAGCATTGTGTTGTCTGCCTGCTTTTCCCTACTATGTCTTCATTGAAACTCCCCATCATACAGTAGGTGAGcgaacatacagtatatcatgcCCCTTTCAATGGTAGAACAAAATAAATAGGGTCTGTGGCCAGGTTGTCAGGGTAAACTACTGGCCCTCATATCATAGTTAGGTTCAGAAGTTTTGTGGTCTGTTGAGCCTAATCACTGGCGATGATGATTCTTTGTTGAAACGTTCCATCCTGTGTGACGAATGTCTTGTGACACAATACGCATATTTCAGCCATTTGTCCACAGCTAGGTTGCATTAGAAATGCTCTATTAGTTGATGTCCGTTATGATTCCAATGTACTCGTCTGAAATGTGTTAATACAAAGTTGTCAGTGAGCAATATAGCGCTGTGCACTTAACTCATATGAATAGTTTAGAAAATAAATCTGTTTAGTAAAGAATCATCAATGCATTCAAAACTCAAGCGTTTCATAAAATTTCATAACACTTTAACTTGGCATTTTTCCATCTGTATGATGTGACAGAGGTTGTTCCATGAGAAAGCTGTTGAGAAATCAAAAtcaacaagcccttaaccaacaatgcagttttaagaaaatagagttaagaaaatatttactcaataaactaaagtaaaaaataaaatctataaataagtaacacaataaaataacaataatgagggggtaccggtatcaAGTCAATGTGTCTTGCTGTCACTCATGAGTTAAAGTGAGAAATTCCCTACCTCAATAAGCCCTCAAAGTCAGCCAAATCCCAGATTTCACAATCTTTCACATGCCACAATGACTCACTCCCAGGACTCGGCTTTAAAACAGCTCTCTCCCCACAGTGGCAGACAAAGCGGTTTTCTTCTCACAGCGGCAGATTTGAACTCACCACAGacagagaaggaaggaaagaaagaaagaactcGCAACTGGactgaaaaagagagaaagatataacAATAAAACACTTTACAGTACCTTTTACCAGCTAGATAACAACCTTAGACTTTATTAGAGGATTTCTAGTAGGATCATCTGTAACCCCAAGATGAGCATCAGAATGTCAGCCAGTCTTGTCGTTGTGCTCCTGGCCCTCCTGACCATTACTGAGGGGATGAGTCTGAGAGGCATGGGGGCTGACCTGCGATGTCGCTGCATTGAGACGGAGAGCAGACGCATTGGTAAACTCATTAAGAAGGTGGAGATGTTCCCTCCCAGCTCGCACTGCAGagacactgagatcatTGCCACTCTGAGCAAGAGCGGTCAAGAGATTTGTCTGGATGTCAGCGCTCCTTGGGTCAAGAAGGTCATTGAGAAGATGCTGGCCAACAACAAATGAAGAGGGGGAATCATCCCATGAATACTCTGGGATTCTGAACTGTTTACAAGATACAAACCAAATAAGTATTTATAAGATTGATAGGCTGAATTATATCATGTTCTATCCAGGTTGGAATACAATATTAGATGTAGAGTGGCATGAGACTGTTTTAAGTGAAAAGACAGTCGGTTTCTTATATACAACCAAGTACTATGTACTAAACttatattttatttgtatttataaagtgtttttctttcattGTTATAATCAAATTATGAGATTTACATGCATTCCGGTTGTATTGGAATGATTTCGTAATGAATAACGTCATATCCTACTTGACCCTCAAACGAATGTATTCATGCAAACCTCAGTATATTTATTGATAAATTTATTTAGTTGCCTATTTATTCATGTTAAACTGTTGGATCATGTTGAAACTTCCAATCTAATTCAATTAcaataaatgtgtaaaaaaaacaactctGAAATCc
>TU1267664
GCCACAGACAGAGAaggaagaagagaaagaaaaaaaagagaactCGCTACCGGACTGACATTAAGAGAAAGATATAACACTTGTTACCAGCGAGATAACAACACACTTTATTGGAGGATTTCTAGTAGGATCATCTGTAACCCCAAGATGAGCATCAGAATGTCAGCCAGCCTTGTCGTTGTGCTCCTGGCCCTCCTGACCATTACTGAGGAGATGAGTCTGAGAGGCATGGGGGCTGACCTGCGATGTCGCTGCATTGAGACGGAGAGCAGACGTATTGGTAAACTCATTAAGAAGGTGGAGATGTTCCCTCCCAGCTCGCACTGCAGagacactgagatcatTGCCACTCTGAGCAAGAGCGGTCAAGGAGATTTGTCTGGATGTCAGGGCTCCTTGGGTCAAGAAGGTCATTGAGAAGATGCTGGCCAACAACAAATGAAGAGGGGGAATCATTCAATGAATACTCCGGAATTCTGAACTGTTACAAGATACAAACCAAATAAGTATTTATAAGATTGATAGGCTGAATTCTATCATGTTCAATCCAGGTTGAAATACAATACTAGATTTTGAGTGGCATGAGACTTTTAAATGAAGAGACACTCAGTTTCTTATATACAACCAAGTATTATGTACTAAacttatatttttatttatcaatAGTTTTTATTTTGTTGAGATTTACATACATTCCAGTTGTATTGGAATGATTTCGTAATGAACAACATCACATCCTACTTGACCCTGAAACATATTTATACAAACATCAGTATATTTATTGATATATTTATTTAGTTG
>TU1267665
CTTCTCACAGCGGCAGATTTGAACTCACCACAGacagagaaggaaggaaagaaagaaagaactcGCAACTGGactgaaaaagagagaaagatataacAATAAAACACTTTACAGTACCTTTTACCAGCTAGATAACAACCTTAGACTTTATTAGAGGATTTCTAGTAGGATCATCTGTAACCCCAAGATGAGCATCAGAATGTCAGCCAGTCTTGTCGTTGTGCTCCTGGCCCTCCTGACCATTACTGAGGGGATGAGTCTGAGAGGCATGGGGGCTGACCTGCGATGTCGCTGCATTGAGACGGAGAGCAGACGCATTGGTAAACTCATTAAGAAGGTGGAGATGTTCCCTCCCAGCTCGCACTGCAGagacactgagatcatTGCCACTCTGAGCAAGAGCGGTCAAGAGATTTGTCTGGATGTCAGCGCTCCTTGGGTCAAGAAGGTCATTGAGAAGATGCTGGCCAACAACAAATGAAGAGGGGGAATCATTCAATGAATACTCCGGAATTCTGAACTGTTACAAGATACAAACCAAATAAGTATTTATAAGATTGATAGGCTGAATTCTATCATGTTCAATCCAGGTTGAAATACAATACTAGATTTTGAGTGGCATGAGACTTTTAAATGAAGAGACACTCAGTTTCTTATATACAACCAAGTATTATGTACTAAacttatatttttatttatcaatAGTTTTTATTTTGTTGAGATTTACATACATTCCAGTTGTATTGGAATGATTTCGTAATGAACAACATCACATCCTACTTGACCCTGAAACATATTTATACAAACATCAGTATATTTATTGATATATTTATTTAGTTG
>TU1267663
CTTCTCACAGCGGCAGATTTGAACTCACCACAGacagagaaggaaggaaagaaagaaagaactcGCAACTGGactgaaaaagagagaaagatataacAATAAAACACTTTACAGTACCTTTTACCAGCTAGATAACAACCTTAGACTTTATTAGAGGATTTCTAGTAGGATCATCTGTAACCCCAAGATGAGCATCAGAATGTCAGCCAGTCTTGTCGTTGTGCTCCTGGCCCTCCTGACCATTACTGAGGGGATGAGTCTGAGAGGCATGGGGGCTGACCTGCGATGTCGCTGCATTGAGACGGAGAGCAGACGCATTGGTAAACTCATTAAGAAGGTGGAGATGTTCCCTCCCAGCTCGCACTGCAGagacactgagatcatTGCCACTCTGAGCAAGAGCGGTCAAGAGATTTGTCTGGATGTCAGCGCTCCTTGGGTCAAGAAGGTCATTGAGAAGATGCTGGCCAACAACAAATGAAGAGGGGGAATCATCCCATGAATACTCTGGGATTCTGAACTGTTTACAAGATACAAACCAAATAAGTATTTATAAGATTGATAGGCTGAATTATATCATGTTCTATCCAGGTTGGAATACAATATTAGATGTAGAGTGGCATGAGACTGTTTTAAGTGAAAAGACAGTCGGTTTCTTATATACAACCAAGT

Function

NR:

description
permeability factor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938584.1 False 2310 mRNA 0.38 4 77966862 77984741
XM_021625342.2 False 576 mRNA 0.45 4 77967049 77968425
XM_021625343.2 False 2464 mRNA 0.38 4 77981390 77984734
TU1267664 False 801 TUCP 0.39 4 77966821 77968422
TU1267665 False 840 TUCP 0.39 4 77966821 77983230
TU1267663 True 672 TUCP 0.43 4 77981678 77983230

Neighbor

gene id symbol gene type direction distance location
LOC110538489 LOC106601325 coding downstream 62607 77899521 ~ 77904255 (-)
LOC110538484 LOC106607044 coding downstream 137411 77826539 ~ 77829451 (-)
LOC110538481 LOC106607039 coding downstream 239164 77719710 ~ 77727698 (-)
LOC110539174 prdx2 coding downstream 246928 77704482 ~ 77719934 (-)
LOC110538478 LOC106607036 coding downstream 317122 77633767 ~ 77649740 (-)
LOC110538494 LOC106607051 coding upstream 35084 78019825 ~ 78022664 (-)
hmgxb4a LOC106601319 coding upstream 42183 78026924 ~ 78033369 (-)
LOC110538496 LOC106601323 coding upstream 48834 78033575 ~ 78036134 (-)
foxred2 LOC106601322 coding upstream 53456 78038197 ~ 78043201 (-)
mcm5 mcm5 coding upstream 64315 78049056 ~ 78054376 (-)
G1114874 NA non-coding downstream 11356 77955208 ~ 77955506 (-)
G1114852 NA non-coding downstream 22942 77943695 ~ 77943920 (-)
G1114850 NA non-coding downstream 26149 77940398 ~ 77940713 (-)
G1114847 NA non-coding downstream 32705 77933916 ~ 77934157 (-)
G1114831 LOC100286593 non-coding downstream 71469 77894572 ~ 77895393 (-)
G1114914 NA non-coding upstream 38562 78023303 ~ 78023759 (-)
G1114864 NA non-coding upstream 51664 78036405 ~ 78038034 (-)
G1114920 NA non-coding upstream 69807 78054548 ~ 78057789 (-)
G1114929 NA non-coding upstream 86396 78071137 ~ 78071412 (-)
G1114809 smarca4 other downstream 104356 77858862 ~ 77862506 (-)
G1114714 NA other downstream 271587 77694495 ~ 77695275 (-)
LOC110538477 LOC106607035 other downstream 354062 77610820 ~ 77612826 (-)
G1114604 LOC106607027 other downstream 484350 77482111 ~ 77484731 (-)
G1116006 NA other upstream 1232810 79217551 ~ 79218123 (-)
G1116120 NA other upstream 1469389 79454130 ~ 79454620 (-)
LOC110538563 LOC106580481 other upstream 2215766 80200038 ~ 80201563 (-)
LOC110539175 LOC106601487 other upstream 2389856 80374395 ~ 80376801 (-)
G1117808 NA other upstream 2762838 80747579 ~ 80748056 (-)

Expression


Co-expression Network