LOC110538507 (LOC106601383)


Basic Information

Item Value
gene id LOC110538507
gene name LOC106601383
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 78224770 ~ 78319145 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938592.1
ATACACGCCTCTTTCGAGACGAAGTTCGAAGCGATGGGTAAGTGCGTGTGTACATGCCCGTAAAGGCTGCAAGTAGGAGGCAAGAAAAGGCGAGGGTAATGTTGAACATCGATGGAGCTCATGTAATTTGGTCAACAAGTATTAAGGGTTTCAGTAAGTGATGAAATGTTTGACGTTTACCGGCTGCACGGAGTCGATATGTGTTGATGTGCCATGGCTCCGCGATGGTTTCACCTCTGTGCGCTGGTGTTCTGTCCTCCTCACGGTATCCGGATGGGAAATCTCTGCAGAAAAGTGGCACACTGGCCTCGAAATTAATTCCAGAATTCTCCAACATCGGCAAAGTATTATAAAGATATGGATAAACACTGCAGAGTGAAGGATGAAGCCACGTCAAAGGCAGCAACGCGCAAGGAAAACAAACAGAAACATGGGCGGCTTTTTCGAAAGAAATCATTGAAGTCGGTGGGGAGTTTTGTAAATAAAATTATCAAAACTTTGGGCACTTTTACCCACTTTGGAGATGTTGCAGTTCAGGGCGCAGAGGATGACGATGGAGGGTTTCGTGACGGGACACCTTGTAACATCAGTACCAACTCAGAAAATATCAAAGAGGATGTCCAGGTCGCCGGGGATGATTCTGTTAAAAATAATTCGATAGCTTCTTCCCGTTGCTCGGTGAAAGAGAGGGTTTTATGGTGCTATGGTGGCAAAATTCCAGGTGTTCTAGGCTTGAAAAATCATGGGAACACCTGTTTCATGAACGCCGTGGTCCAGTGCTTGAGCAACACTGACCTGCTCGCAGAGTATCTCGGGTTGGAGCGGTACAAATTGGATTTGAGTCGAAGGAGAATTAATGGGATTGTTAAAAGTGAAGACACGCAGCATGCCAGAGGTGAAGTCACTGAGCAGTTGGCATCACTTGTTAGGGCACTCTGGACTCTGGAATACATCCCTCAACTGTCAGTGGAATTCAAGAGTATAGTATCCAAGTATGGATCCCAATTCCGAGGAAACTCACAACATGACGCCCTGGAGTTCCTGCTTTGGCTTCTGGACCGAGTTCACGAGGATGTCAACTTGTCCTCCTGcagcaacaacaataacaagaCCAAAGCCCCAGGGAAGGGCCCTGGTATATCAGAGGAGGCGATGGTCACTGAGCCTCCCCACTCGCAGCAGCCCGGGGCATGCCACAGCTTTGTACAGGAACACTTCCAGGCACAATACAAGTCATCGCTGACCTGCCCTCATTGTCATAAACAGAGCAACACCTTTGACCCTTTCCTCTGCATTTCACTTCCCATCCCTCTGCGCCACACCAGGTCTTTGTGTGTTACTCTGGTCTTCAGTACGAAGGGCCAGAGATACCTGCGCATCGGGCTGGCTGTGCCTCTCTTTGGTTCGCTGGCCTTTCTTAGAAGGATGTTGGCGGATGAGGGGAAGATCTCCCCAGACCAGgtGATCCTGACAGAGATCTACACCACAGGCTTTCAGCGCTCCTTCTTTGATGAGGAGGATCTGACGTGCATAGCCGAGACTGACATCATCTATGCCTTCCAGGCCCCGCCCCTATACATCAGAGGAGGCTCTGCACTACTCTCAGGGTACCACCACAGCCTGCCGTCGTCGCCGTACTCCTCCGGGCCCGAAGGTCAAAGGTTACCTCCATCCGGAACTTTGTCATCAGAGTTCCTGAACCATGGTGTGCCGGTGAAGATCCTGTTGCTGGTGTGCAACGCCGCCTGGAATGCCCAGCAGGCTGTCAGGTTTGGACCTCCGTTCCTGATGAGGGAGGACCGCTCCACCTCCTGGGACCAGCTGCAGCAGAGCATCCTCAGCAAGCTCTACTACCTGATGATCAACGGAGCACAGGCCCAGAATGCCAGAGTGCTGTTTAAGATCCGTGTGGTGGGAGGATCAGCGTCCTACAGCTACCTCTCCCCCCAGGATGGACGGCCGCTCTACCACCCAGCAGTGAacagAGCTCTTAATCTCTGTGGCTCAGGAGGACCGCCCCATGTGAAGCTCATCATCGAGTGGGAACACAGAATCAAAGACTGCCTGTTTGGGAACATCCAGGAGGAGGTGGTGAAGGATGCTGAGAGTGTGAGAGGCCAGCATCAGCAGCACGTCCAGCAGCACAGTTGTACCCTGGACGAGTGCTTTCAGCTCTACACTAAAGAGGAACAGcTGGCCCCAGACGATGCATGGAAATGTCCCCACTGTAAGCAGCTGCAGCAGGGCATGGTGAAGATGAGCCTGTGGACGCTGCCTGACATCCTCATCCTCCACCTCAAGCGCTTCCGGCAGGTGGGCGAGCGCCGCAACAAGCTGGCCACGCTGGTGCGCTTCCCCCTAGACGGCCTAGACATGGCGCCCCATGTGGTGAAGAGGAGTCAGAGCACCCGGCTGCCCCCCCACTGTCCTCTGCCCCCCCACGGCCCTCTGCTCCCTGGCCCCCTGCTCCCTGGCCCCCTGCACCCGGCCTGGAAACAGCCCTGCCCACCCGACGTGGCCCCTCCAGACTTCCTATATGACCTCTATGCCGTATGTAACCACCACGGAGGCATGCACGGGGGACATTACACAGcgTTCTGCAGGAACTCATTGGACGCCCAGTGGTATGGGTATGATGACAGCAGTGCAGAGCCAGTCACAGAGGGGGAGGTGTGCACACGGGGAGCCTACATCCTCTTCTACCAGAGACGCAACACCATCCCTCCATGgtcagccagctcctctctcagaGGCTCCACCAGCTCCTCCACGTCAGACCACTGGCTGATCCGTCTGACGCGGGACAGTAAGAGGGACAGCCTGTTCTCTGGGGGGTCCACCTCTGGCCCTCCTGGCCCCACACCAACCCTTGAATCCCCAGAGCTCCCTGTGTTCGAGGACGAGCATCTCAAAACAGAGACAGATGGGTTTGAGAATAAGCCATTTGTCCGAGGCACTCAGGGCAGGAGCGTGAGCATGAGGTCACCCACTAAGACCAAGGACACCCTGAGCAAAGTACTGCCCCTGCGCTGGTCCTTTGGTTCCAAGGACCGCCCCAAACCCTCCGCCCCCAGGCGAGGGGAGCTGGTGGAGTACCTGGAGTCAGGGCGCAGGCCGCGGTGCACCAAGGACCCCATCATCACCCTAGTGGCCACCCCGCCCCAGGGCGGGCACAGGGACCTGGGCAGCTCCCCCAGTGTCAGCAGCCTGAGCTGCATGGACAGGTCCAACTCTGAGGCCTGCGACTCCCCAAGAGTACCAGAGGGCCAGAGCAGGCCTACCGTAGAGAGGAGCTCTAGCCTGGGGCTCAGTATTATCACTAAAGCCAAGGATGACAGCTCACTGGGCCGGAGGTCCTCCAAGAGGTTCAGGCAGGACCAGGGCAGGACCCTGGACCATCACCCTCATAGAGGCTCTACTGATGGGATCCACATCAGCCACAGTGCCCCCCCAAGTAGGGACTCCACACTGAAGAGACCCAAGGCCCAAGCAGGGCTGACCTCCAGGGTAGGGGTGCTGCAGGCTGGTCTACAGcctgaggagaggaaggggatgagGGGTCAGGAGGTAAGGAGCCACGACAGCCTCTTGTCCTTTTTCAAATCAGGCTTCCTGAAGAAAGACACTCAGAGTACACCTAGCAAGGGGGAGGTGGTCCGGGTAAATGGCCACGGACGAACCAGCAAGGGGGAGGAAGTCCGGGCCAATGGCCATGGACGAACCAGCAAGGTGGCAAACGGTAGTTTGTCTAAACTCTCCCTCTCCAATGGGACCCTGAACGGTGTAGCGCTGGAGGAAAAGAGGGCCAACAGCGCCTCTAGAAGTGACTGCCGTCACAGCAAAGGGCAGCTTGTCAACGGGAGGGCAGGGAGTCACAGCTCTGCTGCTGACATCAAGCGTGCCCACAGCTCCAGTAACATCCAGACCAAATTGGACTTGACCCTGCGCAGGTGTGCCTCTCTGCAGAGGAATGGGCAGGTAGCTCCCCCGGCCCCCCGCAGCAGCCTGGCCACAGACAAGCCCAGCTATGCCGCCCTGCAGCGGGCACGCTACAGCACCACCTCCCTGGGCAGGCAGCAGAGACCCGTCCCCGAGTCCTGCTTCTGACTCCCTCCGCACCACTAGGCTAATTGGCTGCTGCCACAGTAGTAGAGTTACCTGGCCTGTGTGTCTCTTTATTTAGAGTTTCTGCCAATGCTACTGTCAGGGTTAGCATGTTAGTGTGAGCTGAGCAGTCTGGCCACCACTGCTAGAGCAGAGGAATAGTCACGGTGTTACTATAAGACAGGTTCTTAGGGGAGGCTTTGCCAACAGCTGAAATCAGTAATGCAGTGCGTAACAGTTAACTGTCTGTCATAGTCTTCTGTTTAATGTAAGTGCCTCTGTGACAGTTCAGAATGATTGTTTGTTGAACACTGGAACCACGCTATTGATTGACACACATCACATCCAGACGGTCACCAGGTCTCTGTAGTATAGCCAGCAGAGCTGTTGTTTCTGAAGGGCATCATGTACCCTCTGTTAACACTGATGTTTATTGACGTATTGTCTTTGTGTGTACATGAATCTATGCAGACTGTGTACAATGGAGAGGTACAACTGCTGTATTGTGATCATATTTATTCCACAAACATGTCAAGCATCGTTCTTGGTTGTATGCTGTCCTTGATTTTCTATTGATGTAGCCATGGAGGAACATCCTGCACAGAAAGATTCAGTTAAATgattgtctgtctgtgcttccacTGCAAACTGTTTGCTGGGACCTCATACACTTATGTTATTGCTAATATTCATCATGTATCATCTTCTGTCAGTGGCAACTGGCAACTGAAAGAAATAAGTACTGTAATAACCTGGTTGTTACACACCTGTTACTGACTACCGTACGGTAACGACGGTGTGTGATTAGAGGAGAAGTAAGGGTAGAGGAATGAAATGGTGATTTATGTTCGTAACTAACATGATTGAAATACTGGGTTGAAAAGAGGGTAGTTTGCACACCATGTACTCCAGCACAGTGATGGTCCTGTATACTCCACAATAGATTTAATGGATCTTGAACCAAAGTTTGTGTCAATCAGAACATTCATCAGGACCCTGAAAAAGGTCTAGATAATCTAGTTTAAGATTCATTGTGGAGCATACAAGAATACCTGACCTTACCGGACTTACCGGACTTACCTTACCGGACTTTCTATTTTAAATCTAAATGGAAAATAATTATCAAAAAGAGCCACTTGAGAGTTTTGTACATTGACTTGTGTGAACTTAGATGGGTGCTATTATGTGATGGTGAACTGTTGTGGAACCTCCTCACACCAGTGGTTTAGGTCAGCCCCTTATAGAGCACCAGGGACAGACTGACAGCCCATTTCAAGGCTTTTAATGTCACTCCCTGTATCTCCCCACTGCTGAGCTCCAGAGAAAGTTACTGCCTGTGTTTCACAATAACTCACCAGGGGGGATTAAACCGGCTTCCCTGTTGCCATGGCAAACTCCCTTAAAGATACCAACTGTGAAGGTGCTGCTGGCTGTTGTCCTCTGTAGAGGGGCAGGGATTTCTTGATTTTCATTCATTTTCAACCCAAAACATCTCTTGACTTAGCTTCCAATGTACAATACATGACGATCTATTACATTACATGAAGATCATTTTGTATAGAGTGCTGTAATGCATTTTAATTGTCAGCCATAGGGTACATGCCAATTCAGATATATGCACATTCTGTGTATGTTCTAGTCAGTGCAGATTTCCCAGCAACAATGGATGGAAACGTATGATGTGTGTTTTATGTTAGGAGGGTGTAGAGCACATGTGTTTGAGCTTTCATCAACTGTATATGAACATATGTAGAAGTAATATTACCAACACAATGGCATACAGTGCTTCTGTAAAGGGAAAAATACTATCAGAGTTAATGTATTTATCTATTAGATTTCTGAGTTACTTAATTACTTAGGCCCATCGCCCCATGAGAAGCATAGGCCATCAACTGGCCATCAACTGAGTTGACTTCATGTATCTGAAATTATCTAGAATTTAATCCCAATGAAATGATACAATAATTTACTATTCTCCTAAACTATAATGTTAATGTGTAGGACATATGATTGTGTTAGCAGACATACAGTAGTAGCTATGCAATATACTGGACCATATGGGATGCCCCATATGCATCATCATAACTTCTTCTAATGGGGATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACCATCATGACAAATTGGTTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATAGGCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATAGGCTGATGACACCACACCATCAACATAGGCTGATGACACCACACCATCAACATAGGCTGATGACACTACACCATCAACATAGGCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATAGGCTGATGACACTACACCATCAACATAGGCTGATGACACTACACCATCAACATAGGCTGATGACACTACACCATCAACATAGGCTGATGACACTACACCATCAACATAGGCTGATGACACTACACCATCAACATAGGCTGATGACACTACACTATCAACATTGTCTGATGACACTACACCATCAACATAGGCTGATGACACTACACTATCAACATAGGCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATAGGCTGATGACACTACACCATCAACATAGGCTGATGACACTACACCATCAACATAGGCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATAGGCTGATGACACTACACCATCAACATAGGCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATAGGCTGATGACACTACACCATCAACATAGGCTGATGACACTACACCATCAACATAGGCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATTGTCTGATGACACTACACCATCAACATAGGCTGATGACACTACAC

Function

NR:

description
ubiquitin carboxyl-terminal hydrolase 43-like

GO: NA

KEGG:

id description
K11856 USP43; ubiquitin carboxyl-terminal hydrolase 43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938592.1 True 7445 mRNA 0.50 15 78224770 78319145

Neighbor

gene id symbol gene type direction distance location
LOC110538975 NA coding upstream 15775 78203548 ~ 78208995 (+)
LOC110538506 LOC106601316 coding upstream 51856 78127633 ~ 78172914 (+)
LOC110538500 LOC106607056 coding upstream 175741 78046893 ~ 78049029 (+)
LOC110538493 LOC106601372 coding upstream 222224 77998427 ~ 78002546 (+)
LOC110538490 LOC106607046 coding upstream 326422 77895449 ~ 77898348 (+)
LOC110538508 grb2 coding downstream 13723 78332868 ~ 78384166 (+)
LOC110538976 LOC106601392 coding downstream 70790 78389935 ~ 78414270 (+)
LOC110538509 LOC106607066 coding downstream 98784 78417929 ~ 78421199 (+)
LOC110538510 LOC106601396 coding downstream 102363 78421508 ~ 78489545 (+)
ddx5 LOC106601397 coding downstream 177803 78496948 ~ 78502470 (+)
G1114179 NA non-coding upstream 43561 78181010 ~ 78181209 (+)
G1114177 NA non-coding upstream 45117 78179425 ~ 78179653 (+)
G1114137 NA non-coding upstream 109260 78110064 ~ 78115510 (+)
G1114132 NA non-coding upstream 127443 78095134 ~ 78097327 (+)
G1114257 NA non-coding downstream 11616 78330761 ~ 78331079 (+)
G1114261 NA non-coding downstream 44970 78364115 ~ 78385010 (+)
G1114305 NA non-coding downstream 97066 78416211 ~ 78416450 (+)
G1114341 NA non-coding downstream 215865 78535010 ~ 78535872 (+)
LOC110538485 smarca4 other upstream 373965 77845399 ~ 77864078 (+)
G1113968 NA other upstream 405149 77774218 ~ 77819621 (+)
G1113861 LOC100136012 other upstream 599774 77591721 ~ 77624996 (+)
LOC110538313 LOC106601291 other upstream 1492652 76730857 ~ 76732118 (+)
LOC100136171 LOC100136171 other upstream 1754543 76464742 ~ 76470326 (+)
LOC110486564 LOC106601427 other downstream 730860 79049969 ~ 79053051 (+)
G1115550 LOC106601417 other downstream 755521 79074666 ~ 79077216 (+)
slc9a3r1b LOC106601421 other downstream 872871 79161938 ~ 79196532 (+)
G1115610 NA other downstream 884195 79203340 ~ 79204836 (+)
G1115707 NA other downstream 1057521 79376666 ~ 79377080 (+)

Expression


Co-expression Network