elob (elob)


Basic Information

Item Value
gene id elob
gene name elob
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 81995871 ~ 81999759 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036938781.1
ACTATGGTAAAGTAAATGTTGACATGTAGAAACCGTTCATTCCCTCCATTAAGACATGGTGGGAAACGCTTGATATGGACTCCTTTTGTTTCGCAGCATATTAAGCTAACGGATGTGTTTCTGATGATCCGGCGTCACAAGACGACCATCTTCACTGATGCCAAAGAGTCCACTACGGTCTACGAGCTGAAGCGCATAGTGGAGGGTATCCTAAAGAGGGCACCGGAGGAACAGAGGCTGTACAAGGATGACATGTTGCTGGAGGATAGTAAGACTCTTGGAGACTGTGGCTTCACAAATCAGACAGCCAGACCTCAAGCCCCAGGGACTGTTGGATTAGCTTTCCGTCTCGGTGatGATGCATTTGAGCAGCTGAGGGTTGAGCCCTTCTCCAGCCCCCCAGAGCTTCCTGACGTCATGAAGCCTCAGGACTCTGGCAGCACAGCCAATGAGCAGGCCGTGcagtgaaggaaggaaggaggaagggagggacatgggggggggggatctgggaAGTGGTGCTTTGGATTAGGTAGGCCGGCTTTACAGACTGCTTTAGGGTAACATGTGAGTGTACCTGTGAGATCTTTAACTTTGCAGGAAGAACATGAATTCCCTCTCACACAGGAGTATTTTCATGTTATTCCTGAACTAGGCTCACGCATGTTTAGATTCACCCATAAGATCCCTCAACAAACATGTCTAATTTGTCAGGCCACTGTCAGTAAGGGGGTTGGGAAAAATTGAAAAATGATTCATACCTCATTTAATTCATACTAGTCTTTTGGGGAGGGTGTAGCCTGTCTTTTGGCTATGGTGGGGATTTGCGAAGGGAGTGGCTATTACATTTTTAGAATGCCCTCTTGCTGATTGCATTATTTTTCTTTCTTCAATATTAATATTACAATTTAGCGTTTTTTAATTACTCCTTGGGGTGGTAGTATGTGGCGCAACAAAGGGTTTGTGAGTTATTAGCTTATCTAGATAACATATGCATGAATGGATCtgaaataaacacacaaacatgttGATGCCATGACATAAAATGTATAGCAGAACACATGTacttgcacacgcacacacggatggacacgcgcacacacacacagagaatggtGTGAAGATTTACAATCATCAGTTTTTATTTCGGTGTGAAGGTATTAAGCTTTCCCCACTCTGGTTTTTGTTTGCTTGTTTCTTTACTTTTGAACCTTTGCACTGGAGTTCCTGTGTAATTTTGTTTCTCCTTGAGTCTATACAAAACTGTACCAATTTGACCCCTATCCCCCAAATTACaccggtggggggggggggggggtctgaagtGTAAATGGAAAACCTTCAGTGGAAAGAGACAGGAATCACTAATCTTTTGTGATAAACAAGCAAGAAGGTACAAATTACTGTTGTTGAACTGAAATAGGTGTAAACTGTCTCAATTTGATTCATCAACCTGACTTTGGGGTGGTTGTCATGCCCTTTTTTAAGATATGATGGAAATGGTTCACCAACGAGCTCTTTTAAAACAGGACTTTATGAAACAAGCAACACGTGTAATTGTCTTGagttgacataaaaaaaaaacattttctttgtCACCTCCTGTGTGGTATATTGTTAATGGACTCTGTGAAATGCTTTTGTGCCATTCACTTTACTTGGTATTTATCATTCATATGGTGAAATAAAATCAGCGAAATTTGAAATTGCCAAGATTGTATGATAGTGTAGTGTTATACTACAGCCAGAAAGAGGTGAGCACTTGCTTAATCTATTAAACTAGCTACAGCAGGAGAAGAATGTGTTTGTAGCAGGCTGGATGAGAGCCAGTCAAAAATGTAGCTAGCTCATTTATTTGGATAAAGGGTCAGGTAGGTAACTTTATTAATCTACACAATTGAGGATGAAGTGGATTAGCGAGTTAGCTATAACAATAATAGCCCATTCATTAGTGACCTTAATATTTGTTAATAAATTACCTTGGTAAAATGTTTAGATGGCTAGCTAGCCTGTACTTTGTAATTTAGTGTGTTGGCTGAACAAGCATGGCCTTTTGCA
>XM_021625567.2
TGGGCAACGTACACAATGGTCGTTAATACGATTTCAATGGTGTTTCCTAGCTCATAAAAAGTATCTCTGGTGTCATACACCACTGTTGGATGAGAGCGTTTTGTGATTCTCGCAGTGCAGTGTGGGATCGCGGAGGCGCAACCGACCGAGAGAAATGGATGTGTTTCTGATGATCCGGCGTCACAAGACGACCATCTTCACTGATGCCAAAGAGTCCACTACGGTCTACGAGCTGAAGCGCATAGTGGAGGGTATCCTAAAGAGGGCACCGGAGGAACAGAGGCTGTACAAGGATGACATGTTGCTGGAGGATAGTAAGACTCTTGGAGACTGTGGCTTCACAAATCAGACAGCCAGACCTCAAGCCCCAGGGACTGTTGGATTAGCTTTCCGTCTCGGTGatGATGCATTTGAGCAGCTGAGGGTTGAGCCCTTCTCCAGCCCCCCAGAGCTTCCTGACGTCATGAAGCCTCAGGACTCTGGCAGCACAGCCAATGAGCAGGCCGTGcagtgaaggaaggaaggaggaagggagggacatgggggggggggatctgggaAGTGGTGCTTTGGATTAGGTAGGCCGGCTTTACAGACTGCTTTAGGGTAACATGTGAGTGTACCTGTGAGATCTTTAACTTTGCAGGAAGAACATGAATTCCCTCTCACACAGGAGTATTTTCATGTTATTCCTGAACTAGGCTCACGCATGTTTAGATTCACCCATAAGATCCCTCAACAAACATGTCTAATTTGTCAGGCCACTGTCAGTAAGGGGGTTGGGAAAAATTGAAAAATGATTCATACCTCATTTAATTCATACTAGTCTTTTGGGGAGGGTGTAGCCTGTCTTTTGGCTATGGTGGGGATTTGCGAAGGGAGTGGCTATTACATTTTTAGAATGCCCTCTTGCTGATTGCATTATTTTTCTTTCTTCAATATTAATATTACAATTTAGCGTTTTTTAATTACTCCTTGGGGTGGTAGTATGTGGCGCAACAAAGGGTTTGTGAGTTATTAGCTTATCTAGATAACATATGCATGAATGGATCtgaaataaacacacaaacatgttGATGCCATGACATAAAATGTATAGCAGAACACATGTacttgcacacgcacacacggatggacacgcgcacacacacacagagaatggtGTGAAGATTTACAATCATCAGTTTTTATTTCGGTGTGAAGGTATTAAGCTTTCCCCACTCTGGTTTTTGTTTGCTTGTTTCTTTACTTTTGAACCTTTGCACTGGAGTTCCTGTGTAATTTTGTTTCTCCTTGAGTCTATACAAAACTGTACCAATTTGACCCCTATCCCCCAAATTACaccggtggggggggggggggggtctgaagtGTAAATGGAAAACCTTCAGTGGAAAGAGACAGGAATCACTAATCTTTTGTGATAAACAAGCAAGAAGGTACAAATTACTGTTGTTGAACTGAAATAGGTGTAAACTGTCTCAATTTGATTCATCAACCTGACTTTGGGGTGGTTGTCATGCCCTTTTTTAAGATATGATGGAAATGGTTCACCAACGAGCTCTTTTAAAACAGGACTTTATGAAACAAGCAACACGTGTAATTGTCTTGagttgacataaaaaaaaaacattttctttgtCACCTCCTGTGTGGTATATTGTTAATGGACTCTGTGAAATGCTTTTGTGCCATTCACTTTACTTGGTATTTATCATTCATATGGTGAAATAAAATCAGCGAAATTTGAAATTGCCAAGATTGTATGATAGTGTAGTGTTATACTACAGCCAGAAAGAGGTGAGCACTTGCTTAATCTATTAAACTAGCTACAGCAGGAGAAGAATGTGTTTGTAGCAGGCTGGATGAGAGCCAGTCAAAAATGTAGCTAGCTCATTTATTTGGATAAAGGGTCAGGTAGGTAACTTTATTAATCTACACAATTGAGGATGAAGTGGATTAGCGAGTTAGCTATAACAATAATAGCCCATTCATTAGTGACCTTAATATTTGTTAATAAATTACCTTGGTAAAATGTTTAGATGGCTAGCTAGCCTGTACTTTGTAATTTAGTGTGTTGGCTGAACAAGCATGGCCTTTTGCA

Function

symbol description
elob Predicted to enable metal ion binding activity. Predicted to act upstream of or within transcription elongation from RNA polymerase II promoter. Predicted to be part of VCB complex and elongin complex. Is expressed in several structures, including axis; mesoderm; notochord; retina; and solid lens vesicle. Orthologous to human ELOB (elongin B).

NR:

description
Transcription elongation factor B polypeptide 2

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K03873 ELOB, TCEB2; elongin-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036938781.1 False 2058 mRNA 0.42 4 81995871 81999536
XM_021625567.2 True 2104 mRNA 0.42 4 81995871 81999759
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Neighbor

gene id symbol gene type direction distance location
LOC110538627 LOC106606891 coding downstream 1228 81992128 ~ 81994643 (-)
LOC110538625 armc5 coding downstream 5248 81980619 ~ 81990623 (-)
LOC110538997 LOC106606476 coding downstream 36981 81928965 ~ 81958890 (-)
paqr4a LOC106601588 coding downstream 75437 81910078 ~ 81920434 (-)
LOC110486663 NA coding downstream 85803 81906163 ~ 81910068 (-)
LOC110538626 LOC106606893 coding upstream 1140 82000899 ~ 82007590 (-)
LOC110538631 LOC106601590 coding upstream 52324 82052083 ~ 82065099 (-)
LOC110538632 cd2b2 coding upstream 65719 82065478 ~ 82068444 (-)
LOC110538635 LOC106601593 coding upstream 84449 82084208 ~ 82099839 (-)
LOC110538636 hsd3b7 coding upstream 122008 82121767 ~ 82133545 (-)
G1119734 NA non-coding downstream 15583 81979610 ~ 81980288 (-)
G1119852 NA non-coding downstream 25018 81970561 ~ 81970853 (-)
G1119836 NA non-coding downstream 62235 81932704 ~ 81933636 (-)
G1119760 prf1 non-coding downstream 67453 81924616 ~ 81928418 (-)
G1119731 NA non-coding downstream 126196 81867967 ~ 81869675 (-)
G1119729 NA non-coding upstream 27438 82027197 ~ 82083901 (-)
G1119885 NA non-coding upstream 111539 82111298 ~ 82111667 (-)
G1119890 NA non-coding upstream 129737 82129496 ~ 82132724 (-)
LOC110538640 LOC106585555 non-coding upstream 170621 82170380 ~ 82228178 (-)
G1119919 NA non-coding upstream 230801 82230560 ~ 82230830 (-)
G1119715 NA other downstream 317452 81677602 ~ 81678419 (-)
G1119621 NA other downstream 548349 81446794 ~ 81447522 (-)
G1117879 NA other downstream 1121657 80870775 ~ 80874214 (-)
LOC110538585 LOC106601460 other downstream 1220010 80771698 ~ 80786963 (-)
G1117808 NA other downstream 1247815 80747579 ~ 80748056 (-)
LOC110538642 LOC106601611 other upstream 256356 82256115 ~ 82276873 (-)
LOC110539000 LOC106606868 other upstream 773417 82771312 ~ 82775046 (-)
G1120687 NA other upstream 1722786 83722545 ~ 83724090 (-)
LOC110538701 NA other upstream 2405056 84403982 ~ 84614260 (-)
G1121555 NA other upstream 2550042 84386334 ~ 84799220 (-)

Expression

elob(elob) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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elob(elob) Expression in each Bioproject

Bar chart with 21 bars.
elob(elob) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
End of interactive chart.

Co-expression Network