LOC110538631 (LOC106601590)


Basic Information

Item Value
gene id LOC110538631
gene name LOC106601590
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 82052083 ~ 82065099 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625569.2
GGTCGGCGTGCCAGTGGAACTTTTGATGATGAACTGACATTTGTGAAATGGTTAAACTTGGGCGCCGTCCTGCGTCGTGTTTACGTTAAAGATGTCTACACAATTATATTATAACAAAACTTCATATTTTTCTTACTAAATAATTTGGGGGGGGGTGCGagaaagacagacagggggagagtgAGGATGTTGATCTAGTTCCCTGACTTGCTCCCCTAAATAGTCTGTCCAATGGAGGGAGATGCCAAGGTTCCCCCAACCCCTTTCTGTAATCCCCCTCACAGCGAACCTCCACCCCaccttctccctctttcctccatcACCCCCAGCTGTGAAGATGGCAAAAAGCCTGGTGACAGGAGGAGGAGTGGGCGCATTCAGAAGACACCGAAGAAGCAGGAGCCCAAAGACACAGTGGCGGAGTCCAGACAAAATACATCCCCTGCCAAGAGGGAGAGCAGTGTGATGCAAGTGTCTCAGTCCCTGTCAGTTAAGCTAATGAGAGTTGATCCCCTCGGCAAACAACCGCTAAAAAAGAGCGGTTTGGATCTCAATGTTGCATCAGAATGTCAAATGTCTAAGAACAAAGACACAAAAGGCTCAAATAACAAAGCGATTCCATCCTCTTCCACGTTAACTTTAGATGTAAATACTACTGGCAAGACTGAACATGATTTCAACCAATCAGGCATGGAGGTTGGCTGTGGAAAGTCCCCTGGAAGCCCGAGCTCTGTCAAGCGATGGGTGATTGGCCCATTGTTTCAGTCATTTAAATCCAAGATGGCCAGTTTCACACAGATTGTCATGAGTCCCGTCCGACTTTTCAAACCCAATGGCTCCCCACCTGAACCAGATGTAGACATCTCCTCTGCCTCTCATAGTTCTCACCAACAAGGACCTGGGTATGAGCTAACCTCTGGCACAGTGCAACACTTGGAAGCTGGAAGAGGAGGAAATGACCCTGCCTCTCATAAACACTTAAAGTTCAGCATGGATCTAAAAACCCACGGCACTCCAGAAGAGGATGAGTTTTCTCTTGAGGGGAAACAAAATATAATGCCACCTGGAGATGTGCAAAGGGACACCTGTATGTCAAACAGCTCAGAAAAGGAGACCAATAATAATGATTCATTACCTTGTATGCAGCGTAGTCCTCTACTCAGAAGCAGTATCAAGTGTGATTCTGTATCAACGGAGTCCCAGTTCAACTCATGCTCTTCCATGTCCTTTCAACCCCCTGACCCCTCAAGTTCCTCAAATGGGTCCAAGCTGTCTCTCATTGTTCAAATGGAGGAGCAGGTGGATTTGACAGGAGCTCACCGGAGACCATTGCGTCGAAAATGTGTTTTTCTAAATGAAGCTGCATCACAGAGCAGTCCCTCTGCTGCAATTAACGCATCTGAAGCAGACCGCATCTCTAGTTTGCCAGCTGAAGTAGGAATCTGTGAGCCCAAGGCTAAACGGCTTGCCACAAAATCGTATGTAGAGTACAAAATCTGGGACTGTATTGACAGTGAAACATCTAGTCCATTATCATCCTCTATCTACAATACCCATTCTAAGAGTCTATGCCAGGCAGATGATGACAGCATAAAAGCTGTTGGTCTGCCTCAAGACCGAAACATGTTGGTGTGTGGTTCCCAGTCACATATATCTATCCGGAAAAGTCCCAGAAAACCTGTAAACACAACACTGAACAACTGtgcctcagtcagtcagtgtcttCAAAAGCAGATAGATGAGTGTGAAGGAAAGCAAGGCTATATGGCAGGCTCAGCAAAGGAAGTCAAGAGGAGATGCAGAGCAACTCCTTTTACTGCGATTAAGAGAGACGCAGAGAAAAAGAAAAGAGTGAAACTGACGAAAAGAGAGCGATGTGAAGAGGTTAGAAAAGAAGAAACGGTAGCTGTTGATTTAGAAAGTTACACATTAACATCGGTAGAGCACACAAGTGATGTAGAACTTGTCCAGCCGGGGGTTGGATCAAAACCGTGTGCAACTTCTAAATCTCAGTCTCTTAAAAGTAGGGTGCTGCTTCGGGTTAGCCAGAGTTCTACCGTATACATTGAAACCACTCAAAAACCCTCTGGAACACATGTACCTCTGATGGAGGTGACGAAGGACAAAGGTAGAGGTCGAAGTGGgcgttttaagaaaaataagtctcTCACAGTAATGGCCACTTCAAGTAATGGGAGTGTGCTAGAGCACAGTAATGACAGTTTGTGTGACAACAGCATAGCAGCCAGCAATAGTAGGGGTATGACCAGTGCCTTGAGTTATGGTGACACTGACTCTAGTTCAGCATGTAATATGGAAATGGTAACTACCATGACAACCGCTTTGATGAAAGAAAATCATGAACTGCCCGTCTCTGATCAGCACTTGGAAATCAAGGGGAAGTGGCCTCAAACGGCATCCAAAAATCAGCAAAAATACATCTGTAAGAAGAGGAAGATTTCCCCAGTGGTTGAAGTCGAGTCATCTCAAAATCAACAAAAGTGTCTGAAGTTGAATGAGATCGCTTCAGAAGATCCACTGAAACCACCGAAACAAAATAAATCCAGGAGGTCTCATAACTCAAGCTCAACCCAACAGCTTGGCACTTTTTCAGGGCTGACTGGTGTTGGTGCCGATCACTTGCACTCTTTGAAGCCCAGCAAAGATGACAATGTCCATGTAGCTTCTAGATCTTCAGACGTTACACAACAGACATTACAGACGACCGCAGTGGTGGCTGTCCACAAAGACGCAGGTTGGGGAGCAGAAATGAGTGGGTCTGACTCTAGCAAGAGCCCAAAGAAGAGTCAGAATGGATCTAATAAAATGTCTGTCAGTGATGCGTTACTGGTGGATAAGAGGTTTGTGGAACCCCTTGGTGGACGTAAGAGAGTCAGGGGAGGTCCGTCCACAGAGGACAATGCCGAGACAACTCAGTCCCTGCAACTTAATCAAATAACAGTTGAAGAAAAAAAGAGAACTGTGCCTTGGCCTGTGCGAACTTATCCCAAATGTTCAATCaagctgaacaaaaatatggTGAAACATTCTATGGCTTTGCAAGGAAATTATGTGGCAATGGACTCTGATGTAGAAGTGTTTTCCACTGCCTCTGAACCAACTAACCTTGGCCAGAACAAGACTGTTGAccaggtgatggaggaggagcaGGGGAAGGAGGATGAGTGTTCCGAACTGCCTGTACCCTCTGAGACGAGGCTCAGGGGGAGGGGGCAAAAAAAGAAGCCAAAGAAAGCAGCTAATCAATGTAGGAAGCACAGGCCTGTGACTAGGAAGAGGGGgcgggaagaagaggagagaaataCCGTGATTGGTGAGCAGATGGACTTTTCATCAGATAACAACACCACCCTTAACAAGCGTCTGTTGCGCAGCTACTCCTGCCCAGAGATCCCTGCTCTCCTCCACCATGACAGCCACTGGACCACCTCTCTGCATGGCAGGATCCTCTCCGTACCCCGGCTCCACCCCGCCCTCTTTCCTCCTGTCCCCACTCCTCCCGCACCGTCCAGACGTCCACGCCGTCATACTGTCTCTAGTGTGGAAATTGAGCGGGAGATAGCTCCGTTATGCCTGCGTAAAGAGGTGTTCCCCTCAAAAAGGTCCTATTCATTGGGCAACCCGTCCTACCACCTGTTACCCGGTGTGCCACTCTCCACTTCCATCTCTGTCTGGGCCTCCTGCTTCCTGTCAAGCCCCCTGGCCTTCCTCTCCAGGAAATTGCAAAAAGGAAGTCTAGCTGCCACTAGTAGTGCTTGCAGTCATGatacctccccttcctcctcttccattTCACCATCCTGCTCTTCTGTACGTCACCTGTTCTCCAGTTCCGACCCCTGTGACCTGACATCATCCTCTGCTTCAGTCTCCTCCTTTTGCAGTGCATTGTCAAAGATTCCCTTGGAGAATGAGACAAGCCAGCAGcatgaggaggatggggagaatGTGGAGGACAGAAACCGTTTCAGGAATGAGTTCGAAGCCATAGGgatgagagaggaaaaagcaTTGTCAGATTCTGAAATTAAGTTGGAAACCGGCAAATATGAGGAACGAAGGAAAGTGTCATCCATTCGAATTCGTAAATCCTTACCCAAACCCCTCCACAACCTCACACCCATGGGCCTGCCCAAGCCTATCAGGGTGAAGAAGAAGGAGTTCAGTTTGGAGGAAATCTACACTAATAAAAACTTCACCAAGCCCCCTGAAAGACGTCTGGAGACCATATTTGAGGTGCCACTCAGTCGACGCGATGGGTCTCATTCCCTCCTTGGTCAGAAGCGCATGAAACGTTTTGTGGAGTTCCCAGAGGTTGGTGTGGCCAGAAAGCCAAGGAAGCCACTTGTTGGTGCTGGGGCAGGGGGTGGTTTACCCAGGAAAGCTGGGGTTGGCTCTCCTTTTGGAAGGCCCAAGCGCGGGGGTTGCCTCTCTTCTAAAGATCACCCCACCCTCAATCTGCAGGAGCTTGATTCACTTCTTTGCTCCAAGCTTGACCAGCTGGATTCCTGGTTAGCTTTTGACCAGAATATCTGTTGACCAATGCCAATCAAAGGGGTACACAATAGCACATTTACATTTTCGAAAATATTGTTATTACAAATTGCCCAGCCCGTTGCCTTCCATCCAACATCAAGCTCGTCCTCATCTTCTGTAATTGTTTACAATGTTTTTCTTTTGTGGGGGTGTATTATTTACCTTCCATTGAGTCGTTTAAAATGATAATTGAAGAATGTTTGTATTTTCATTGTGTACTATTTGTAGATAACGATATGGAATATACTGTTATTGTAATATTtgattatctatggatgtaatgcATTTTATATCATTGGTTTAGGTCAGGGAGTGCATAAGTGTTTGTATTTAAAACTGCTACTATTTCTGCACTCAGTTTTGTTGATAATCTGTATTCTTAATATGCCAAAGCCTCAGCCTTTTAATCATTATTAAACACGTTCTGCTTTATTAATCACTTGCTACTGAATCCTACATTTGGAAGCTCACATGCAACTCAAATCTTTGGGGATATTATCCATTGACATCAATGTATATTTACACAGCAGTTATTGTATGCACATACTTCTCAAGTAAGGATTCTTACTAGCCAAACAATTTCCAGATGATAATTCTCAATTTAGCTGTAGGTGCAAACCTGTTATTGGCAACTAGCATCAAATGGCAGCTACTTTCAAGATATATTGAATGTTGAATTCTGTTTTTGGCCAAATTACAGCTGTAAGAAAATGTTTCTGGTTCTGACAATCAGACTTCATATTTTCTTTTAGAACCGTCCTTTAATTGTTGCCTGACTATTCCTGCCAATTCTTGCCTTGTATACACATTACATTGTATTGTTTTCTTCACCTCCGGATCATAACTATAGCAAATAAAATGTATATTGtccattttatacatttttgtaaaaaaTTCTATGTTGAATTGTTACTTGTGTAAAATTGAACGTAAACATCATGACACTCCAATGAGTATTTCTATGGAAACATTAACATGAATACTTTCATCAATGCAGTTTAATGTTTTGTATCATTGTGGATTGTAATATTTGTTTTGATAGCAATATTTAATTGAAAATTGCTAGTATATACAAATTACTTTTCTATTACATCACATTTTTTGTAATTATATTTCTGAAAATatttgtctttactgtgtggttTGTATGCATTTTTTTGTTACAGCTAGAGAGTGACTTTATATTAAGTAAAAGGTATTTGTAGCTATATTAACTTAATGTAAATGAGGCAAATAGCCTGAAAAGGAACTTAATTCAGATCAAATTGTTGTAAATGTATTTTCATTTAATTACAAAATCCTTTAAAACATGCTAtgtataaatataaaatacaaaGGCAATAACACGAATACAGTACATGTAGAAATGGTAGACATTTCTAGTTAGTTCCTGACATATACAAATCATTGATTTCACTGCTAAATAAAAATATAACATTGTTCAAAAATAAAGTTCATGTTGCATTTCATAAATGGTCAAAGTGAAATGTCAAGGTTGAGACAGATAGTGGACATGGGAGTGTTTTGGAGTCAGGCCCCTGTATAGTGGCTCACAGTTTGTTTTGAATTTATACAGGATTTTTTAAAATCTGCTGTTTTATACTCATACAGTCTTGGACTCATGTATGTCAGCAAATAAACCGTGTCCATTAAATGCTATCTCAAAAA

Function

NR:

description
uncharacterized protein LOC110538631

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625569.2 True 6225 mRNA 0.43 10 82052083 82065099

Neighbor

gene id symbol gene type direction distance location
LOC110538626 LOC106606893 coding downstream 44493 82000899 ~ 82007590 (-)
elob elob coding downstream 52324 81995871 ~ 81999759 (-)
LOC110538627 LOC106606891 coding downstream 57440 81992128 ~ 81994643 (-)
LOC110538625 armc5 coding downstream 61460 81980619 ~ 81990623 (-)
LOC110538997 LOC106606476 coding downstream 93193 81928965 ~ 81958890 (-)
LOC110538632 cd2b2 coding upstream 379 82065478 ~ 82068444 (-)
LOC110538635 LOC106601593 coding upstream 19109 82084208 ~ 82099839 (-)
LOC110538636 hsd3b7 coding upstream 56668 82121767 ~ 82133545 (-)
LOC110538637 LOC106601535 coding upstream 76241 82141340 ~ 82155882 (-)
LOC110538638 ccdc47 coding upstream 93203 82158302 ~ 82162913 (-)
G1119734 NA non-coding downstream 71795 81979610 ~ 81980288 (-)
G1119852 NA non-coding downstream 81230 81970561 ~ 81970853 (-)
G1119836 NA non-coding downstream 118447 81932704 ~ 81933636 (-)
G1119760 prf1 non-coding downstream 123665 81924616 ~ 81928418 (-)
G1119731 NA non-coding downstream 182408 81867967 ~ 81869675 (-)
G1119885 NA non-coding upstream 46199 82111298 ~ 82111667 (-)
G1119890 NA non-coding upstream 64397 82129496 ~ 82132724 (-)
LOC110538640 LOC106585555 non-coding upstream 105281 82170380 ~ 82228178 (-)
G1119919 NA non-coding upstream 165461 82230560 ~ 82230830 (-)
LOC110538641 map3k3 non-coding upstream 169682 82234780 ~ 82254841 (-)
G1119715 NA other downstream 373664 81677602 ~ 81678419 (-)
G1119621 NA other downstream 604561 81446794 ~ 81447522 (-)
G1117879 NA other downstream 1177869 80870775 ~ 80874214 (-)
LOC110538585 LOC106601460 other downstream 1276222 80771698 ~ 80786963 (-)
G1117808 NA other downstream 1304027 80747579 ~ 80748056 (-)
LOC110538642 LOC106601611 other upstream 191016 82256115 ~ 82276873 (-)
LOC110539000 LOC106606868 other upstream 708077 82771312 ~ 82775046 (-)
G1120687 NA other upstream 1657446 83722545 ~ 83724090 (-)
LOC110538701 NA other upstream 2339716 84403982 ~ 84614260 (-)
G1121555 NA other upstream 2484702 84386334 ~ 84799220 (-)

Expression

LOC110538631(LOC106601590) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

LOC110538631(LOC106601590) Expression in each Bioproject

Bar chart with 21 bars.
LOC110538631(LOC106601590) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network