Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110538640 |
| gene name | LOC106585555 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 82170380 ~ 82228178 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| id | name | namespace |
|---|---|---|
| GO:0005882 | intermediate filament | cellular_component |
| GO:0005198 | structural molecule activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021625581.2 | False | 3045 | mRNA | 0.53 | 9 | 82220858 | 82228178 |
| TU1273189 | False | 867 | lncRNA | 0.42 | 2 | 82170380 | 82221355 |
| TU1273190 | True | 797 | lncRNA | 0.40 | 2 | 82170380 | 82221285 |
82,130,000
82,140,000
82,150,000
82,160,000
82,170,000
82,180,000
82,190,000
82,200,000
82,210,000
82,220,000
82,230,000
82,240,000
NC_048576.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118936242 | LOC106601567 | coding | downstream | 8618 | 82171932 ~ 82212240 (-) |
| LOC110538638 | ccdc47 | coding | downstream | 57945 | 82158302 ~ 82162913 (-) |
| LOC110538637 | LOC106601535 | coding | downstream | 64976 | 82141340 ~ 82155882 (-) |
| LOC110538636 | hsd3b7 | coding | downstream | 87313 | 82121767 ~ 82133545 (-) |
| LOC110538635 | LOC106601593 | coding | downstream | 121019 | 82084208 ~ 82099839 (-) |
| LOC110538641 | map3k3 | coding | upstream | 6602 | 82234780 ~ 82254841 (-) |
| LOC110538642 | LOC106601611 | coding | upstream | 27937 | 82256115 ~ 82276873 (-) |
| LOC110538643 | LOC106601605 | coding | upstream | 50947 | 82279125 ~ 82286213 (-) |
| LOC100136190 | LOC100136190 | coding | upstream | 66625 | 82294803 ~ 82297556 (-) |
| LOC118937753 | NA | coding | upstream | 71656 | 82299834 ~ 82304066 (-) |
| G1119890 | NA | non-coding | downstream | 88134 | 82129496 ~ 82132724 (-) |
| G1119885 | NA | non-coding | downstream | 109191 | 82111298 ~ 82111667 (-) |
| G1119729 | NA | non-coding | downstream | 136957 | 82027197 ~ 82083901 (-) |
| G1119734 | NA | non-coding | downstream | 240570 | 81979610 ~ 81980288 (-) |
| G1119852 | NA | non-coding | downstream | 250005 | 81970561 ~ 81970853 (-) |
| G1119919 | NA | non-coding | upstream | 2382 | 82230560 ~ 82230830 (-) |
| G1119945 | NA | non-coding | upstream | 117034 | 82345212 ~ 82352994 (-) |
| G1119988 | NA | non-coding | upstream | 186476 | 82414654 ~ 82415018 (-) |
| G1120021 | NA | non-coding | upstream | 230985 | 82459163 ~ 82459859 (-) |
| G1119715 | NA | other | downstream | 542439 | 81677602 ~ 81678419 (-) |
| G1119621 | NA | other | downstream | 773336 | 81446794 ~ 81447522 (-) |
| G1117879 | NA | other | downstream | 1346644 | 80870775 ~ 80874214 (-) |
| LOC110538585 | LOC106601460 | other | downstream | 1444997 | 80771698 ~ 80786963 (-) |
| G1117808 | NA | other | downstream | 1472802 | 80747579 ~ 80748056 (-) |
| LOC110539000 | LOC106606868 | other | upstream | 544998 | 82771312 ~ 82775046 (-) |
| G1120687 | NA | other | upstream | 1494367 | 83722545 ~ 83724090 (-) |
| LOC110538701 | NA | other | upstream | 2176637 | 84403982 ~ 84614260 (-) |
| G1121555 | NA | other | upstream | 2321623 | 84386334 ~ 84799220 (-) |
| LOC110538632 | cd2b2 | coding | downstream | 101936 | 82065478 ~ 82068444 (-) |
