LOC110538656 (LOC106601657)


Basic Information

Item Value
gene id LOC110538656
gene name LOC106601657
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 82831130 ~ 82835150 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625617.2
aGCACTAACCGACCTACGTGCTGGTGGCGTAACGTCATCTGTGTTAATGTGGCCCTCTACTCCAGTTTTATTATCGGGGCTGTGGCTAAATTAGCACGGTAGCATTTCGTCAAACATGATTTGACTACATAGCAGACACTAAGGACAGAGATGGCGGTGTGTGCACTGACAATGGACGGGATGGGAGACGAGGTGGCTGCAGTAAGCGGTGTGTTACTCCTGGTCTTGGCCCTGGTCCTGGCTTGGCTCTCCACGCAAGTGGCAGATCGGGGAGACCACATCCTGAGCACCATCCTTACAGTCGGGGCCCACGCCTCTCTAATTGGGCTGGGGGGCCATGACAGTTACAGTGGAGGGCCACCCAGTGCAGACACACCAGAGCAGCAAACACCTCCACCCTCCCAGGAGAACAAGCCAGAGGAGGGGGAGCCTGGGTCTGAGAGGGAAGATGGTGAGATAACAGGAGAGGGGACTGCAGGGGCTGGAGTTGACCTGCTGTTGAATATCCAGGGGAAGAAACCTCAGACATACcagcctgatgatgatgatgaagatgatgaggaagaggaggactaTGAGGAAGAAGACAAGGTTCAGAAGCTGAGCCCAGGGGTCTCCTGCACCAGCATCACGGTTCGTTTGAAGTTCCTGAATGACACAGAAGAGGTGGCAGTCCTGAGTCCCCAGGATACAGTGGGTCTACTGAAGAGTAAGCACTTCTCAGGGCGGGAGCGTCAGATCAAGTTGATCTACCAGGGCCAGCTGCTTCAGGATCCCAAACGGACTCTGCTCTCCCTCAACATCTCTCACAACAGTGTGATCCACTGCCACGTGTCCCAGGTGCTGCGGGAGGCCAGCCCAGAGGAGGCAGCTCGCTCTGGGGCTAGTGGGGGAATCAGGGCTGCAGGCCTGGCTCTGAGCACCAGCAGCCTGGTGGTGCCTGTGTTTGTGGTGATGCTAGCCGTGGTCTGGTACTTCCGCATCAACTACCGTCAGTTCTTCACCgcccctgctaccatctccctGGTGGGAGTCACTGTGTTCTTCAGCTTCCTCATCTTTGGAATGCACAGCCGGTgagcaggagaggaggcagaatGGAAGGGCCCTCATCTGGGCAGGGGAATGAGAGGGAAAAACAACTGTGTCAGGAGGATGAATGGAGTCAGGTGGCCTCTGCCTCAGACACCATAGAGCTCAACTGGAATCCTAAGAGTGGGTGTGCCTGTGTTTGTGCATGCACCAGCAAATAGCATAATATGAGATTGATTGTATGTGCAGAGATTTAAGTTATCTGGAATGTGTGTTTGTTAGTATGAAGCAGAGATAATACTGAGTGGTAATTTTGTTTCTCAGAAAAACATTGAGTGGGTCCAGCTCCTGTTGGTCCTTTATAGGGCAGAACCATCAGCATCACACCCAGGACCACAGGCTGCTTGGTCCACTGTGTCAGCAACATCTTCTGGCCAGTTTGGCTTCACATAGCCTGTTCTGTGTTAGGTTGCTCTCAGAAATTAGGGtctctattcaatcagatccgcttaAGCCCACATCAGTATAGAAattgtgtgggaggtggaactgtgTTAGTGCTGTCAAATCCACTGAAGTATAAGAACTGGAGACTGCGCCCAAGATGTCCGCCTTATGTTTTCAAGGTTATCTACTCACGTTCACATACGCCAATTCATGTCTGTCTATATCCGGGTTGAATCCAGTTTATACAGATCAACATCACATGCACACTAGCACTCAGTGTGCACAGGGAGCAGCGCAGACATCATCCAAAAACATGGCAGacagataaataaaaaatgttggcATCAGCTACAAATATTTGAATAATTCAATGGATGATTTGTGCACAAAGGTGATGACCTAAGTGTCTTATTATGAATTTTGAAATCTGACTTATCTATGTGGCCGTGTATGGAAATTGTCCTTCTGGGCTGGCAGTCAGTTAAACTGCAAAACTGTAGCAGTCGAAACCGTGCTTTGCTTTAAGTCAATACCACggagccttgtttacaagttcgaacaatggaatgtgagatgtaatctacacctcgatgAGGCTGATTAGAAATCTGTATTTGAATTATTTTCAATTTGAGCGTAATTTCTATCTAGCCTACACGttctcgttctgaacttctaaTGCAAGTAGGACAGGTGTGGCTTCGTGATAATGATAAAGAGCAGCCACTCAcagatttgacagctccaacgcaGTTGCACCGCCAGAAATCAGCTATGCGCGTGTCGGCTATCGCCGGTTAacacttgatctgattgaatctagacCTAGGATAATGCATCTCTTCACATCATGGCCACATACTCTTTTCATTATATACACGTTAACGTTCCAGAaatgttttctttttgtagtacGTGTTTGAACGAGCAATTCATTTCCTCATTTGCAACGGAAACAAAATGAAGATTATACAA

Function

NR:

description
transmembrane and ubiquitin-like domain-containing protein 1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K23340 TMUB; transmembrane and ubiquitin-like domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625617.2 True 2454 mRNA 0.49 3 82831130 82835150
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110538659 NA coding downstream 29573 82799402 ~ 82854271 (-)
LOC110539000 LOC106606868 coding downstream 56367 82771312 ~ 82775046 (-)
LOC110538653 LOC106601618 coding downstream 74420 82708968 ~ 82756710 (-)
LOC110538652 LOC106601594 coding downstream 245597 82569273 ~ 82585619 (-)
LOC118937753 NA coding downstream 527064 82299834 ~ 82304066 (-)
LOC110538664 LOC106600670 coding upstream 484105 83319255 ~ 83377434 (-)
LOC110539001 NA coding upstream 554963 83390113 ~ 83392771 (-)
LOC110538668 LOC106601616 coding upstream 570637 83405787 ~ 83411465 (-)
LOC110538672 LOC105013088 coding upstream 615090 83450240 ~ 83456764 (-)
LOC110539003 NA coding upstream 657084 83492234 ~ 83496443 (-)
G1120189 NA non-coding downstream 36057 82788477 ~ 82795073 (-)
G1120141 NA non-coding downstream 51434 82777982 ~ 82779696 (-)
G1120117 NA non-coding downstream 154568 82670021 ~ 82676562 (-)
G1120116 NA non-coding downstream 162411 82667928 ~ 82668719 (-)
G1120109 NA non-coding downstream 170839 82645835 ~ 82660291 (-)
G1120220 NA non-coding upstream 87796 82922946 ~ 82968397 (-)
G1120284 NA non-coding upstream 138000 82973150 ~ 82973434 (-)
G1120288 NA non-coding upstream 144381 82979531 ~ 82979948 (-)
G1120290 NA non-coding upstream 150404 82985554 ~ 82985917 (-)
G1120291 NA non-coding upstream 154553 82989703 ~ 82989926 (-)
LOC110538642 LOC106601611 other downstream 560206 82256115 ~ 82276873 (-)
G1119715 NA other downstream 1152711 81677602 ~ 81678419 (-)
G1119621 NA other downstream 1383608 81446794 ~ 81447522 (-)
G1117879 NA other downstream 1956916 80870775 ~ 80874214 (-)
G1120687 NA other upstream 887395 83722545 ~ 83724090 (-)
LOC110538701 NA other upstream 1569665 84403982 ~ 84614260 (-)
G1121555 NA other upstream 1714651 84386334 ~ 84799220 (-)
G1121678 NA other upstream 1756441 84591591 ~ 84619256 (-)
cacna1aa NA other upstream 2199322 84859212 ~ 85036879 (-)

Expression

LOC110538656(LOC106601657) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110538656(LOC106601657) Expression in each Bioproject

Bar chart with 21 bars.
LOC110538656(LOC106601657) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network