LOC110538666 (LOC106601613)


Basic Information

Item Value
gene id LOC110538666
gene name LOC106601613
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 83396856 ~ 83399815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625627.2
GTTGCACCACCGATTCGGCCCAGTAGTAGCAGGAGAGGCGGGTCCATCAGACAGTCAGCTGGGTAAGAAGACAAAGAGAGTCCTCCAAGCCCAGTACCTTCTCGTTCCACCGTCGAATCTTCACAGCTAACGCCCTTCCTTCCATCCAAAATGCGCGAAATAGTGCATCTGCAAGCCGGACAGTGCGGAAACCAGATTGGAGCCAAGTTCTGGGAGGTGATCAGTGATGAGCATGGCATCGACCCGACTGGAACCTACCATGGAGACAGCGACCTGCAGCTAGACAGGATCAATGTGTACTACAATGAGGCCTCAGGTGGGAAGTATGTCCCCCGTGCCATCCTGGTGGATCTGGAGCCGGGCACCATGGACTCTGTCAGGTCTGGCCCCTTCGGACAGATCTTCAGGCCAGACAACTTTGTCTTCGGCCAGAGTGGAGCTGGAAACAACTGGGCCAAGGGCCACTACACAGAGGGAGCAGAGCTGGTAGACTCTGTCATGGATGTAGTGAGGAAGGAGGCAGAGAGCTGTGACTGCCTCCAGGGTTTCCAGCTCACCCACTCCCTGGGTGGGGGTACTGGCTCTGGCATGGGCACCCTGCTCATCAGCAAGATCCGCGAGGAGTACCCTGACCGCATCATGAACACCTTCAGCGTGGTGCCCTCTCCCAAAGTGTCCGACACAGTGGTGGAGCCCTACAACGCCACCCTCTCTGTGCATCAGCTGGTGGAGAACACAGATGAGACCTTCTGCATTGACAACGAAGCCCTCTACGACATCTGCTTCCGCACTCTCAAGCTCACCACACCCACCTATGGAGACCTCAACCACCTGGTGTCAGCCACCATGAGTGGAGTGACCACCTGCCTTCGTTTCCCTGGCCAGCTCAACGCCGACCTCCGCAAACTGGCTGTCAACATGGTGCCCTTCCCCCGCCTGCACTTCTTCATGCCCGGCTTCGCCCCCCTCACCAGCAGGGGGAGTCAGCAGTACCGCGCCCTGTCCGTGCCTGAGCTCACCCAGCAGATGTTCGACTCCAAGAACATGATGGCGGCCTGCGACCCCCGTCACGGCCGTTACCTCACCGTGGCCGCCATCTTCCGTGGCCGCATGTCCATGAAGGAGGTGGACGAGCAGATGCTCAACGTCCAGAACAAGAACAGCAGCTACTTTGTGGAATGGATCCCCAACAACGTGAAGACCGCTGTCTGCGACATCCCACCCCGCGGCCTCAAGATGTCTGCCACCTTCATCGGCAACAGCACAGCCATCCAGGAGCTGTTCAAGCGTATCTCTGAGCAGTTCACTGCCATGTTCCGTCGTAAGGCCTTCCTTCACTGGTACACCGGAGAGGGTATGGATGAGATGGAGTTCACTGAGGCTGAGAGCAACATGAATGACCTGGTGTCTGAGTACCAGCAGTACCAAGATGCCACCGCTGAGGAGGGCGAgtttgaagaggagggagaagaggaagccGCCTAAACCATCCCGTCACTCAACTGCCAAACAGTCTATCACTCCCCTCCGTCCTGTCCCCAAAGCACAACTTGATTGATTTAAATTAATGTTAAAGAAAAGGAAACTCCGATTTGTGATAATTAAATGAATGTGCTCAAGCATCTCTTCAGTGGTTCCCTTCAGTCTAATTAGTATCCTGTATGGTTTTCAGGTCTCATCCTAGAAGTCAGAGGGTATTCTAACATGAGGTTTCTTATGAAAGCAGCAAGCTGTAACTCGATGTCTAAATTGAATTATGTGAATAAATTAACAATGTGTTCCAATG

Function

NR:

description
PREDICTED: tubulin beta-4B chain-like

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625627.2 True 1786 mRNA 0.55 4 83396856 83399815
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Neighbor

gene id symbol gene type direction distance location
LOC110538665 LOC106600671 coding upstream 6738 83384122 ~ 83390118 (+)
LOC110538663 asic2 coding upstream 89126 82859309 ~ 83307730 (+)
LOC110538662 LOC106601646 coding upstream 550152 82838617 ~ 82846704 (+)
LOC110538655 atxn7l3 coding upstream 563646 82821020 ~ 82833210 (+)
LOC110538654 ubtf coding upstream 576086 82799993 ~ 82820770 (+)
LOC110538667 LOC106601614 coding downstream 2463 83402278 ~ 83405039 (+)
LOC110538669 LOC106606512 coding downstream 12001 83411816 ~ 83416515 (+)
LOC110538670 LOC106606839 coding downstream 18078 83417893 ~ 83440915 (+)
LOC110538671 LOC105013089 coding downstream 41749 83441564 ~ 83450114 (+)
LOC110538673 dnjb1 coding downstream 58657 83458472 ~ 83463766 (+)
G1119249 NA non-coding upstream 75571 83320679 ~ 83321285 (+)
G1119170 NA non-coding upstream 203236 83192288 ~ 83193620 (+)
G1119157 NA non-coding upstream 220112 83176244 ~ 83176744 (+)
G1119152 NA non-coding upstream 227954 83168624 ~ 83168902 (+)
G1119151 NA non-coding upstream 231292 83164668 ~ 83165564 (+)
G1119316 NA non-coding downstream 47462 83447277 ~ 83480307 (+)
LOC110538674 LOC106606841 non-coding downstream 74228 83470729 ~ 83476381 (+)
G1119331 NA non-coding downstream 80788 83480603 ~ 83480858 (+)
G1119351 NA non-coding downstream 125190 83525005 ~ 83525504 (+)
G1119383 NA non-coding downstream 177404 83577219 ~ 83577659 (+)
G1118965 NA other upstream 509892 82885987 ~ 82886964 (+)
LOC100136955 LOC100136955 other upstream 597088 82788554 ~ 82799768 (+)
LOC110538650 ndua4 other upstream 1023219 82345174 ~ 82373637 (+)
LOC100335037 LOC106606889 other upstream 1416568 81977678 ~ 81980288 (+)
G1118488 NA other upstream 1500566 81895490 ~ 81896290 (+)
LOC110539179 LOC106606845 other downstream 351185 83744298 ~ 83756511 (+)
LOC110538685 LOC106606823 other downstream 725538 84125310 ~ 84145340 (+)
G1120926 NA other downstream 825002 84224817 ~ 84226281 (+)
G1120984 NA other downstream 1138650 84538465 ~ 84791130 (+)

Expression

LOC110538666(LOC106601613) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 600.
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LOC110538666(LOC106601613) Expression in each Bioproject

Bar chart with 21 bars.
LOC110538666(LOC106601613) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30000.
End of interactive chart.

Co-expression Network