tnfsf18 (LOC106606848)


Basic Information

Item Value
gene id tnfsf18
gene name LOC106606848
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 83662375 ~ 83691589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625964.2
GTGAAACACTGAGTTAAAAGAACATTGTTGAGAAACAAATGATCCAAAGAAAGGGAGAAGTCATGTATATACTTACCCGTAGTGCCTGAGGGCTGCTCTGTTACTATTTACTACATGTCATCATCTGTACTTTGCACTTCACCAATTACGTCAGATAAACATGGTTATTGTACCCGCATTCCTGTGCTAGTATATTACAAAGCCTATTGCTCATATGCCACAAGAAAGGAAAGATCAGTTATTTCCTTTACAACCTAAACAACGTTAGAAACGGAGAGTAGTATCCAACTTTCACTTAGGGAAGTgtttttgttccataatgtcgaTCTAATCATCATATGTGTAAGTGTTGTTTTGGCCTTTGTCATCACTAACCAGGTCAGTGTACTCAAATACCAAGATTGACACCTTAACCCTGTTGTGTGGTCCGGAAACATTTCCCAGGTCAGCCACAAGTAACCAAAGTGAAACCATAAGAGGTGCACAGCACAGCCTGGCATGCAGCTGAGACTGGGAGATTTTAGAGATGCAAACATTTGAAACACAACCTTGTGACATGTTATCATATTAATGTACTGAAGAGTGGGGTTTGAATATGTTGACTTGACCAGTATTTTACTACAGTACTTCtgcacagaaagagaaagaggatagAAAAAGAAAGCGAATTACACTGACACATCAGAAAAGTGAATGCACTCACATTGAACAGTGCCAAAACACTCAAAATCTACCGGTTCGATTTGGCTTATTGTAGTAGCTGacaaatcacattgtaaaatCTATTTAGGGGAAAGATGTGAATGACTCATTTTCACTTAAAGGTCAATGTTTATCACGCCCTCGTTTTCTCATTGGTTGTGAGTGGTGTTCCTCTTTCTCTATGAGAGTAGTGTGAATAGTAGGAGGGCCATTACCCTACGTGAAGAGTTATCTTTGTTTTCCTTCAGTCACTCAGGAAAGTACCAGCCCGACCTGCCTCCTGTCCTGGACAgctacagaggaacacagagcAGAACACAGACATAAAGACGTCCTCGTCGGatacagacacaacacacacacacagcagtgttcTGAGGTTTCACAGCAGAGGAAGCCAAGAGGACAAACACACAGcggctccatctctctctctcttcctgcacGCCCTCTGCTGCATCTCAGGGGACTGAGGTTGCTCTACCCgagcctctccccccccccccccccccccccccccacggccAGACGTTGCAGATTGATGATGCCGCAGCAGTCAATGGATCGCTGTGAGGTTTCAGAGAACTGCCACCATCATAGCCCGGGGGTCCAGGGGAGCCAGCGGCGCCTGGTCAGTGGACTCCTTCTCTGGGTCGGTCTCCTCACCGTCAGCCATGTGGTCTGCATCACCCTACTCGTCATCACCAGGCCACACGCACTGcCTCTGCCAGAAATAGTTTCAGCTCCAAAACCCACAGCAGACTCATCTCTGAGCATACCCCTGGAGCCACAAAGAGTGCCATGGCAAATGATCACCTTTGAACCCACAGGTATAGATGATAATGATGTCTCGGTGGAGAGAAGTGGGATCAAGTGGAAGACGCAGTCCAAGGCAAATAATTTTGTCTCCCTAAAGGGCGGATCCCTGACCATCAACCAGGATGGTTGTTACTTCCTGTATCTTCAGGTTACTCTGGAGACACCAGAGGTGTCTGGACAGCACATAGTGAGAGTGAACAAGCCCAACCAAGTCCTGCTGGAAGTAAGGATGACCAACACCTCCCTCAGCACAGGGTTCCTGGGCAGGGCTGTGGATCTAGCAGCCTCTGACACCCTCACAGTCACTGTCTCCCCTGGTGCCAGGATCAACACCACCTACACCGCCACATACCTGGGCATCATAGGTCCAAAATGATATTTGTAGATTCTATTGGATATAGACACTCCTGTCTTCATAGACACATGCTGGGGGCTAGATCTGGAAGTCATTTGGTAGGGGTTGATTGAATAGATCCTGGGGATCTGGAGTTAACTGGGATCAACCAATCATCCCACCAcctgtcagagagagatggagtagtGGGGAAGATCATGTGGGAGACACCGTGTATTTGACTGAAACTGATTCAGTCCGACTCCCTGCTCATCACAGAAGATTATTCCACTCCTTTATCCTCTACCTAGCCTTCCAACCTGTTTTGAGCTGCAAGGATTTTCTTTCCAGAATTCTACTGATTTTTTAATTAGATTTTTAttaaccgttatttaactaggcaaatcagttaagaacaaattcttattttcaatgagggccTATCAAaatgcaaaaggcctcctgcagggaagGGGGATTAAAAAGGTAATATAATAATGTGTCTTGTAATGTTGGAAAATATGTTTAAAAGTATTGGTCATCATGGGTTATGGGTTGTACTGTTACTTTAGCATGTTTCTCTCTTGGATGAAGCAGCATTGTTTTTATCGCTCAGGATTATAGTTAGTATGTTTTTCCAGTAAATATTGTTTTTTAAGCTATGAATGAGGGGATTGTCTTATCAAGTCTTGTGCACAGGGTTGTTGAGAGAATGCACAGTATCAACATATCTTTAATGTTTACTTTAATATTTGCGTATTGCTTTGtatttaaaatatttgtttttttacCTATTTATGTCTTATTACAATATTatcttattattattttcttattatttattttctataTCTATTTTGAAGGACATGTTGAGTATGTTGTAGGATGAGATGTAGAGATAATCAATGAATGTAtgtcactaaccaggtttccattcaGACGTTTTATGCCAGTAAAGTACGTCAGGTAAAACATttaatgacaggcctgatggaaacagaaaatGTTTCGGTAAACCTTCCAAATGTAGACaaaaggtgggatctttttgtgtcggtaaaacaCCTTCATGCCCAAATATTGATGTAATAACCACCAtgtcgaagtaaacttggagtcatgccactatgactcgggaaagcatgcagtttattggCTACAGATTAAATGCATTATGATGAACTTTTCAATAACTtttcaataaatatcgagggtcttctTCTGGCGATGATGATCGATTCTTGGCtgccttttgacaaatacaaataatattgCTCTTATCCAATAATCGCATTATGTTGGTAGCCAACCGCACtgtatctcaaatcaaatgtatttatatagcccttcttacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgca
>XM_036938848.1
cctctgttgTTGCTTGCCTTTatttgtttgctgaaatccatttttttaaatttaaattaaacgttaatcaaatacaaccactGACTGTTTCCTCATTGGTGGTGCTATAAGATGACAACTCAGCCGCGAATGCCAATTGAATCTCAACAAGGAAAACATCggtggttgtatttgattaacGTTTTATTAAAAACATTATGGATTTCAAGCAAAGAAATGCACGCAACAAAAGGACAAACATAGGTGGGCCTACAAGTCACTCAGGAAAGTACCAGCCCGACCTGCCTCCTGTCCTGGACAgctacagaggaacacagagcAGAACACAGACATAAAGACGTCCTCGTCGGatacagacacaacacacacacacagcagtgttcTGAGGTTTCACAGCAGAGGAAGCCAAGAGGACAAACACACAGcggctccatctctctctctcttcctgcacGCCCTCTGCTGCATCTCAGGGGACTGAGGTTGCTCTACCCgagcctctccccccccccccccccccccccccccacggccAGACGTTGCAGATTGATGATGCCGCAGCAGTCAATGGATCGCTGTGAGGTTTCAGAGAACTGCCACCATCATAGCCCGGGGGTCCAGGGGAGCCAGCGGCGCCTGGTCAGTGGACTCCTTCTCTGGGTCGGTCTCCTCACCGTCAGCCATGTGGTCTGCATCACCCTACTCGTCATCACCAGGCCACACGCACTGcCTCTGCCAGAAATAGTTTCAGCTCCAAAACCCACAGCAGACTCATCTCTGAGCATACCCCTGGAGCCACAAAGAGTGCCATGGCAAATGATCACCTTTGAACCCACAGGTATAGATGATAATGATGTCTCGGTGGAGAGAAGTGGGATCAAGTGGAAGACGCAGTCCAAGGCAAATAATTTTGTCTCCCTAAAGGGCGGATCCCTGACCATCAACCAGGATGGTTGTTACTTCCTGTATCTTCAGGTTACTCTGGAGACACCAGAGGTGTCTGGACAGCACATAGTGAGAGTGAACAAGCCCAACCAAGTCCTGCTGGAAGTAAGGATGACCAACACCTCCCTCAGCACAGGGTTCCTGGGCAGGGCTGTGGATCTAGCAGCCTCTGACACCCTCACAGTCACTGTCTCCCCTGGTGCCAGGATCAACACCACCTACACCGCCACATACCTGGGCATCATAGGTCCAAAATGATATTTGTAGATTCTATTGGATATAGACACTCCTGTCTTCATAGACACATGCTGGGGGCTAGATCTGGAAGTCATTTGGTAGGGGTTGATTGAATAGATCCTGGGGATCTGGAGTTAACTGGGATCAACCAATCATCCCACCAcctgtcagagagagatggagtagtGGGGAAGATCATGTGGGAGACACCGTGTATTTGACTGAAACTGATTCAGTCCGACTCCCTGCTCATCACAGAAGATTATTCCACTCCTTTATCCTCTACCTAGCCTTCCAACCTGTTTTGAGCTGCAAGGATTTTCTTTCCAGAATTCTACTGATTTTTTAATTAGATTTTTAttaaccgttatttaactaggcaaatcagttaagaacaaattcttattttcaatgagggccTATCAAaatgcaaaaggcctcctgcagggaagGGGGATTAAAAAGGTAATATAATAATGTGTCTTGTAATGTTGGAAAATATGTTTAAAAGTATTGGTCATCATGGGTTATGGGTTGTACTGTTACTTTAGCATGTTTCTCTCTTGGATGAAGCAGCATTGTTTTTATCGCTCAGGATTATAGTTAGTATGTTTTTCCAGTAAATATTGTTTTTTAAGCTATGAATGAGGGGATTGTCTTATCAAGTCTTGTGCACAGGGTTGTTGAGAGAATGCACAGTATCAACATATCTTTAATGTTTACTTTAATATTTGCGTATTGCTTTGtatttaaaatatttgtttttttacCTATTTATGTCTTATTACAATATTatcttattattattttcttattatttattttctataTCTATTTTGAAGGACATGTTGAGTATGTTGTAGGATGAGATGTAGAGATAATCAATGAATGTAtgtcactaaccaggtttccattcaGACGTTTTATGCCAGTAAAGTACGTCAGGTAAAACATttaatgacaggcctgatggaaacagaaaatGTTTCGGTAAACCTTCCAAATGTAGACaaaaggtgggatctttttgtgtcggtaaaacaCCTTCATGCCCAAATATTGATGTAATAACCACCAtgtcgaagtaaacttggagtcatgccactatgactcgggaaagcatgcagtttattggCTACAGATTAAATGCATTATGATGAACTTTTCAATAACTtttcaataaatatcgagggtcttctTCTGGCGATGATGATCGATTCTTGGCtgccttttgacaaatacaaataatattgCTCTTATCCAATAATCGCATTATGTTGGTAGCCAACCGCACtgtatctcaaatcaaatgtatttatatagcccttcttacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgca
>XM_036938849.1
cctctgttgTTGCTTGCCTTTatttgtttgctgaaatccatttttttaaatttaaattaaacgttaatcaaatacaaccactGACTGTTTCCTCATTGGTGGTGCTATAAGATGACAACTCAGCCGCGAATGCCAATTGAATCTCAACAAGGAAAACATCggtggttgtatttgattaacGTTTTATTAAAAACATTATGGATTTCAAGCAAAGAAATGCACGCAACAAAAGGACAAACATAGGTGGGCCTACAAGTCACTCAGGAAAGTACCAGCCCGACCTGCCTCCTGTCCTGGACAgctacagaggaacacagagcAGAACACAGACATAAAGACGTCCTCGTCGGatacagacacaacacacacacacagcagtgttcTGAGGTTTCACAGCAGAGGAAGCCAAGAGGACAAACACACAGcggctccatctctctctctcttcctgcacGCCCTCTGCTGCATCTCAGGGGACTGAGGTTGCTCTACCCgagcctctccccccccccccccccccccccccccacggccAGACGTTGCAGATTGATGATGCCGCAGCAGTCAATGGATCGCTGTGAGGTTTCAGAGAACTGCCACCATCATAGCCCGGGGGTCCAGGGGAGCCAGCGGCGCCTGGTCAGTGGACTCCTTCTCTGGGTCGGTCTCCTCACCGTCAGCCATGTGGTCTGCATCACCCTACTCGTCATCACCAGGCCACACGCACTGcCTCTGCCAGAAATAGTTTCAGCTCCAAAACCCACAGCAGACTCATCTCTGAGCATACCCCTGGAGCCACAAAGAGTGCCATGGCAAATGATCACCTTTGAACCCACAGATAATGATGTCTCGGTGGAGAGAAGTGGGATCAAGTGGAAGACGCAGTCCAAGGCAAATAATTTTGTCTCCCTAAAGGGCGGATCCCTGACCATCAACCAGGATGGTTGTTACTTCCTGTATCTTCAGGTTACTCTGGAGACACCAGAGGTGTCTGGACAGCACATAGTGAGAGTGAACAAGCCCAACCAAGTCCTGCTGGAAGTAAGGATGACCAACACCTCCCTCAGCACAGGGTTCCTGGGCAGGGCTGTGGATCTAGCAGCCTCTGACACCCTCACAGTCACTGTCTCCCCTGGTGCCAGGATCAACACCACCTACACCGCCACATACCTGGGCATCATAGGTCCAAAATGATATTTGTAGATTCTATTGGATATAGACACTCCTGTCTTCATAGACACATGCTGGGGGCTAGATCTGGAAGTCATTTGGTAGGGGTTGATTGAATAGATCCTGGGGATCTGGAGTTAACTGGGATCAACCAATCATCCCACCAcctgtcagagagagatggagtagtGGGGAAGATCATGTGGGAGACACCGTGTATTTGACTGAAACTGATTCAGTCCGACTCCCTGCTCATCACAGAAGATTATTCCACTCCTTTATCCTCTACCTAGCCTTCCAACCTGTTTTGAGCTGCAAGGATTTTCTTTCCAGAATTCTACTGATTTTTTAATTAGATTTTTAttaaccgttatttaactaggcaaatcagttaagaacaaattcttattttcaatgagggccTATCAAaatgcaaaaggcctcctgcagggaagGGGGATTAAAAAGGTAATATAATAATGTGTCTTGTAATGTTGGAAAATATGTTTAAAAGTATTGGTCATCATGGGTTATGGGTTGTACTGTTACTTTAGCATGTTTCTCTCTTGGATGAAGCAGCATTGTTTTTATCGCTCAGGATTATAGTTAGTATGTTTTTCCAGTAAATATTGTTTTTTAAGCTATGAATGAGGGGATTGTCTTATCAAGTCTTGTGCACAGGGTTGTTGAGAGAATGCACAGTATCAACATATCTTTAATGTTTACTTTAATATTTGCGTATTGCTTTGtatttaaaatatttgtttttttacCTATTTATGTCTTATTACAATATTatcttattattattttcttattatttattttctataTCTATTTTGAAGGACATGTTGAGTATGTTGTAGGATGAGATGTAGAGATAATCAATGAATGTAtgtcactaaccaggtttccattcaGACGTTTTATGCCAGTAAAGTACGTCAGGTAAAACATttaatgacaggcctgatggaaacagaaaatGTTTCGGTAAACCTTCCAAATGTAGACaaaaggtgggatctttttgtgtcggtaaaacaCCTTCATGCCCAAATATTGATGTAATAACCACCAtgtcgaagtaaacttggagtcatgccactatgactcgggaaagcatgcagtttattggCTACAGATTAAATGCATTATGATGAACTTTTCAATAACTtttcaataaatatcgagggtcttctTCTGGCGATGATGATCGATTCTTGGCtgccttttgacaaatacaaataatattgCTCTTATCCAATAATCGCATTATGTTGGTAGCCAACCGCACtgtatctcaaatcaaatgtatttatatagcccttcttacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgca

Function

NR:

description
uncharacterized protein LOC110539005

GO:

id name namespace
GO:0050896 response to stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625964.2 False 3274 mRNA 0.43 4 83662375 83675045
XM_036938848.1 False 2580 mRNA 0.43 5 83662375 83691589
XM_036938849.1 True 2571 mRNA 0.43 5 83662375 83691589
Loading

Neighbor

gene id symbol gene type direction distance location
tmed1a tmed1 coding downstream 21422 83633035 ~ 83640953 (-)
LOC110538676 qtrt1 coding downstream 64148 83592898 ~ 83598227 (-)
LOC110539004 LOC103367168 coding downstream 73118 83498829 ~ 83589257 (-)
LOC110539003 NA coding downstream 165932 83492234 ~ 83496443 (-)
LOC110538672 LOC105013088 coding downstream 205611 83450240 ~ 83456764 (-)
adgrl1a adgrl1 coding upstream 81672 83773261 ~ 84002450 (-)
LOC110538683 LOC106601669 coding upstream 410768 84102357 ~ 84106614 (-)
LOC110538687 LOC106606773 coding upstream 496759 84188348 ~ 84192328 (-)
LOC118937756 NA coding upstream 500940 84192529 ~ 84194016 (-)
LOC118937757 LOC106606777 coding upstream 507180 84198769 ~ 84200766 (-)
G1120636 light non-coding downstream 12295 83646377 ~ 83650080 (-)
G1120617 NA non-coding downstream 83794 83577061 ~ 83578581 (-)
G1120585 NA non-coding downstream 150084 83510636 ~ 83512291 (-)
G1120571 NA non-coding downstream 177669 83484413 ~ 83484706 (-)
G1120569 NA non-coding downstream 180757 83481333 ~ 83481618 (-)
G1120699 NA non-coding upstream 49801 83741390 ~ 83759585 (-)
G1120698 NA non-coding upstream 68159 83759748 ~ 83760901 (-)
G1120706 NA non-coding upstream 76216 83767805 ~ 83771423 (-)
G1120805 NA non-coding upstream 289547 83981136 ~ 83981749 (-)
G1120851 NA non-coding upstream 389039 84080628 ~ 84080837 (-)
LOC110539000 LOC106606868 other downstream 887329 82771312 ~ 82775046 (-)
LOC110538642 LOC106601611 other downstream 1391451 82256115 ~ 82276873 (-)
G1119715 NA other downstream 1983956 81677602 ~ 81678419 (-)
G1119621 NA other downstream 2214853 81446794 ~ 81447522 (-)
G1117879 NA other downstream 2788161 80870775 ~ 80874214 (-)
G1120687 NA other upstream 30956 83722545 ~ 83724090 (-)
LOC110538701 NA other upstream 713226 84403982 ~ 84614260 (-)
G1121555 NA other upstream 858212 84386334 ~ 84799220 (-)
G1121678 NA other upstream 900002 84591591 ~ 84619256 (-)
cacna1aa NA other upstream 1342883 84859212 ~ 85036879 (-)

Expression

tnfsf18(LOC106606848) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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tnfsf18(LOC106606848) Expression in each Bioproject

Bar chart with 21 bars.
tnfsf18(LOC106606848) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
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Co-expression Network