LOC110538719 (LOC106606792)


Basic Information

Item Value
gene id LOC110538719
gene name LOC106606792
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 84841243 ~ 84842950 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625677.2
TTCATTAGTATACAGTTGACAGTAGTCAGATTTGCATTCATATTCGGTTGTTCAAATTACACAATTATGCAAACAAATGTGGTACAAATAAACACAGCCTAAACACAACCTACACATGTGTCTAGTCATAAATAGTAGTCTAAATATAGTGTAGGAGGCTACTTACTACATGTTATCCGCAGCTCTTGTGGGGCTTTTGGCATAGGAGGAGCTCATGGAAGAATTAACACCTCTCAGATGACAGCGAGCCACTGACGTCAGCGAAGATATAATAAAGCGGCTGTATAGGCAcgttcatgtatgtgtgtgtgtgtgtgaagtttgGAGAATCTAGGCCCTAACGGTAAAGGAAggtccaaagttgtggcaatcaAATTAAAGTGTCTCTAAACGTCTTAAGATCAATAATAAGCAACAACATGGAGGTCAGCGCTGAGGCCAAGAGGATTATGGTCCACGCTCTAGGCAAACTATACAGCTCGCGCGCCCAGCGCGGGGGACACCGTCTCCACCGGAGCCTGCTGCTCACGCTCGTAATGCAGTCCGCCCGGAATATCTACCACGCATCGCAGGCCAGTTGTGAAACCACGACAGCAGCAGAGACGATCCAGCAAGAGTCGCCGATGGAGGAAACAACTGGAGACCGTTTGGAGAGGGAGGTTTCATCGTCTCTGTCTGGACTACCCGCGACCCCCCAGCCCCAGGAGATTCCAGTATCCTCCGAGGACGAAACGAACTCACACCCGCTGCACTGCAGTGTAACAGTAGGTAGAGAAGACAAGGAGAACCGGGGCCCGTCGAGGCCTGACCGTAACGCCAGGAAGAGACGGGGCAAGGCGGCCTCGGAGCCCGACTTCCTCCCCTGCAAGAAAGCGAAAATGGAGCAAGGGAGAAATACCGTCATACGGAGCTCTGTGAACTGCTACCGTGTCGGTGGGGACTCCCTGGTCTCATCGGTGCCCATGTTAAAAGCCATTGCTGCGTTTTGAAGGGACAATGAAGAGTTTGCTTTGATTTGGGTTCATAAATACAATTTTGTGACGGAGCAGGAGGAATACGTTGTGGGCAAAACTATCCGGGTATGAgccgggtagagagagaggagaccacatATGCGTTCAGACACTATAAATTGCTGTGGTCCCTAATGTTGGAAACTGGGCTGTCCCGGGAACTCAGCGGAGGTTTCTCCGAAAATTGGAGCTTGTTTTGTGAAAGAGGTGACTGATCGTTACGGTAAAAGAGTTCATGCTCTCCCGCTGTGACTTTCCCCGCTGGCTGTGCTCCAAAAGAGGGAGATGGAAGAACATTGGTCTAATACTTTCTAGGGCTGGGCCTGGTCGAAAAGGACTGAAAACAATACACAGCACAAGCCTAAACCGACTGAATAGTGCTGGTTAAAATGACTTTTATAGCCTACACGTGCGCCATGATGCTGAAAATACTAGACCAACCATTTGCTATTAATCACTGCCGTGGGTCCTAGTAATCTAAACATTTGACCTATTACATAAATTGATCCATTAAATGTTCTGAATGTTCTACCGTATGATACATTCACATGTATATTTTGTTAATTTGTACGTTAATTGGTTAAACTGTGGAACTTTTCTTCCATAAGAACCAAAATGAATTGTATCGACACTGATAACCAAAACTGAAACAAACCATACCATACCTcagttttatttattaaaacgtTTTATAA

Function

NR:

description
immediate early response gene 2 protein-like

GO:

id name namespace
GO:0070121 Kupffer's vesicle development biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0060271 cilium assembly biological_process
GO:0060026 convergent extension biological_process
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625677.2 True 1708 mRNA 0.46 1 84841243 84842950

Neighbor

gene id symbol gene type direction distance location
LOC110538718 LOC106606789 coding upstream 1468 84823226 ~ 84839775 (+)
LOC110519485 LOC106601675 coding upstream 343449 84494507 ~ 84517519 (+)
LOC110539008 LOC106606764 coding upstream 429435 84408095 ~ 84411808 (+)
LOC110538695 LOC106606781 coding upstream 475499 84361512 ~ 84365744 (+)
LOC110538693 LOC106601712 coding upstream 499757 84336820 ~ 84341486 (+)
alkbh7 alkb7 coding downstream 208337 85051287 ~ 85057621 (+)
LOC110538724 fcl coding downstream 296330 85139280 ~ 85147768 (+)
LOC118937829 LOC106601687 coding downstream 325424 85168374 ~ 85181618 (+)
LOC110486770 LOC106601688 coding downstream 398764 85241714 ~ 85347238 (+)
LOC110485218 NA coding downstream 567769 85410719 ~ 85414523 (+)
G1121149 NA non-coding upstream 25828 84776734 ~ 84815415 (+)
G1121078 NA non-coding upstream 336390 84504218 ~ 84504853 (+)
G1121006 NA non-coding upstream 361279 84385886 ~ 84479964 (+)
G1121151 NA non-coding downstream 16277 84859227 ~ 84863366 (+)
G1121200 NA non-coding downstream 76246 84919196 ~ 84930992 (+)
G1121244 NA non-coding downstream 147965 84990915 ~ 84991455 (+)
G1121249 NA non-coding downstream 156071 84999021 ~ 85000690 (+)
G1121250 NA non-coding downstream 160722 85003672 ~ 85003891 (+)
G1120984 NA other upstream 50113 84538465 ~ 84791130 (+)
G1120926 NA other upstream 614962 84224817 ~ 84226281 (+)
LOC110538685 LOC106606823 other upstream 702576 84125310 ~ 84145340 (+)
LOC110539179 LOC106606845 other upstream 1088542 83744298 ~ 83756511 (+)
G1121261 NA other downstream 180141 85023091 ~ 85023678 (+)
G1121373 NA other downstream 448645 85291595 ~ 85291968 (+)
G1121374 NA other downstream 449507 85292457 ~ 85292956 (+)
LOC110538728 LOC106592069 other downstream 931425 85659822 ~ 85798939 (+)
LOC110539015 LOC106601683 other downstream 1038855 85881372 ~ 85889294 (+)

Expression


Co-expression Network