LOC110513845 (LOC106606432)



Basic Information


Item Value
gene id LOC110513845
gene name LOC106606432
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 91965356 ~ 91969673 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036939177.1
ATGGCAGCCGGGCATGTTGAGCCTGGTCTGTGGTTGTCTCGTTAGGCGGAGGATTATTTTTTAATTGAATGGTTACTGTTCTGGAGTAATAGAATGCTCAGCCTACCACCGGCTGGGTTCTGGCTGGAGGAGGAGCTCACAGCCTGCAATAAATAGCGGATGATTACATTGAAGGGAAAATATTTCGAAGAGTTATCCATCGGTCTGGGAACAGTCTCGAAGGAAATAGAGTCCAGTGTACTTTACGCCTCACGCTTTCATTCGTCAAATCCTTTTGTGATATTTTGGCGACCCCGTAATTCGATTCCAAATGACTCGGTATGTAAGCAGCTGTTTCATTACTCTGGTCGTTCTGTTCCTTTGGCGGGTCGAAGACATCGCAGACGCTTGCAGATGCCTCCCTCAGCATCCTCAACAGGCTTTTTGCAATGCAGAAATCGTGATCAGGGCGAAGGTGGTTGGAAAGAAAGCGGTGTCTAACGCCATCAAGTATGACATCGAACAGATCAAGATGTTCAAAGGTTGTGACCAGGTTATCCACGCCATCTTCACTTACACCACTTCGTGCAGCGTGACTCTAGAAATCAACAAGGAGTATCTCTTCACAGGCAAGCTGAAGACTGGAAGGATGTCTATAACACTGTGTGGCTATAATCCACCCTGGGAGGACTTGAGTGCTGCACAAAAGAACAGCTTGACTCACCGCTACCAAAGCGGCTGTGattgcaagATCATCCACTGCActtccctcccctgtccaatcAGCACCTCGGATACATGCCTGTGGACATACTTGGGAACCGACAATGGCCAAAACCTTGCCTGTATCAAGAGGCAAGATGGGTCCTGTGCCTGGTACAAGGGGATAGGACTACCCAAGAAGTAGTTCCTGGATATTGGAGACTCCTAAACTCTACAGGCCATCCACTCACTGCTCAGTGACTAAAGATGCCTGCAATTAATACATGAGTAAACACACCTACAAATGCAAGTTGTTGTGATTTTTAAATTGTTTACTGGTCACTTCTACAAGTGCAATTTAAAATAAACATATATAGCACTCAA

Function


NR:

description
metalloproteinase inhibitor 2-like

GO:

id name namespace
GO:0043086 negative regulation of catalytic activity biological_process
GO:0052547 regulation of peptidase activity biological_process

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036939177.1 True 1065 mRNA 0.46 5 91965356 91969673

Neighbor


gene id symbol gene type direction distance location
LOC110487074 LOC106606418 coding downstream 18536 91942342 ~ 91946820 (-)
LOC110513333 LOC106606399 coding downstream 86189 91850565 ~ 91879167 (-)
LOC110485305 roa2 coding downstream 117469 91842220 ~ 91847887 (-)
LOC110487060 LOC106606447 coding downstream 124140 91839398 ~ 91841216 (-)
LOC110487055 notum coding downstream 241509 91701936 ~ 91723847 (-)
LOC110487072 LOC106595712 coding upstream 22712 91992385 ~ 91996594 (-)
LOC118937778 LOC106606432 coding upstream 36155 92005828 ~ 92010521 (-)
LOC110487071 LOC106595712 coding upstream 61959 92031632 ~ 92035979 (-)
LOC118937779 LOC106606432 coding upstream 75495 92045168 ~ 92049701 (-)
LOC118936479 LOC106595712 coding upstream 100654 92070327 ~ 92074629 (-)
G1127250 NA non-coding downstream 23832 91941255 ~ 91941524 (-)
G1127229 NA non-coding downstream 75867 91889147 ~ 91889489 (-)
G1127110 NA non-coding downstream 79543 91884878 ~ 91885813 (-)
G1127209 NA non-coding downstream 121174 91843886 ~ 91844182 (-)
G1127208 NA non-coding downstream 122529 91842563 ~ 91842827 (-)
G1127279 NA non-coding upstream 72177 92041850 ~ 92079771 (-)
G1127323 NA non-coding upstream 199705 92169378 ~ 92171736 (-)
G1127329 NA non-coding upstream 210768 92180441 ~ 92180994 (-)
G1127333 NA non-coding upstream 216367 92186040 ~ 92189820 (-)
G1127349 NA non-coding upstream 243174 92212847 ~ 92213229 (-)
G1126380 NA other downstream 933530 91030856 ~ 91031826 (-)
G1126362 NA other downstream 952854 91012135 ~ 91012502 (-)
G1126256 NA other downstream 1205235 90758010 ~ 90760121 (-)
G1126026 LOC106581772 other downstream 1383096 90581943 ~ 90582260 (-)
LOC110538818 LOC106606471 other downstream 1880493 89960321 ~ 90085312 (-)
LOC110513965 lg3bp other upstream 114237 92081486 ~ 92087514 (-)
G1127417 NA other upstream 390329 92360002 ~ 92361618 (-)
LOC110486093 LOC106606427 other upstream 514554 92458493 ~ 92486264 (-)
LOC110486090 LOC105012845 other upstream 534489 92503706 ~ 92526039 (-)
LOC110516409 LOC106594801 other upstream 641651 92598880 ~ 92802145 (-)

Expression


LOC110513845(LOC106606432) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 400.
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LOC110513845(LOC106606432) Expression in each Bioproject

Bar chart with 21 bars.
LOC110513845(LOC106606432) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30000.
End of interactive chart.

Co-expression Network