LOC110487425 (LOC106606392)


Basic Information

Item Value
gene id LOC110487425
gene name LOC106606392
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 93016163 ~ 93018006 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939216.1
TTTTCAATTCCACCGCTGGTCACAAGAAACATCCCTTTAGCAGCTTTACTTTTACTGTAGATGCACATTTTTTTAACACTATACAGTTTTCACCATACCGTTTTTAGGCATAAAGGCTATGAAAAGGTGTAGGCCTAAATCAAATCACTTTTCTTTCATAGAGACATCTACACTGTTATTTTGGAGTGTTATTATTGCGGCCGCAGCAGCAGTTAATCTTTGACCAAGCTGGTGACCAGCCGGTAAAGATGAGTCTACCAGAGCTCATCAACTTCATAATCTGGGAACCTGTGCACTCACTCCCTCATGTGACAGTCACACTGCCAGAGACAAAGGTCACCCCGTAGTTCATCCACTTCTGTCACAAGCATTCAGGATGCCAAAAACACCAGCCGTGTTTCTTCTCCTCGGTCTCTGTCTGTTCGGGGCAGCTGACGCCCTGTACAAGCAGTGGATACCCGACACTAACTATGAAAACAAGACCAACTGGGACAAAGGGTCCGTGCCCTGCGGTAACGACATAGTGCAGTTCTCGGCTCAGAGGAAAGTGTCTGTGTATGTGGAGACGGTCCACTCTGTCCAGGAGATCCGGCTACCGGTGGACGGAGAGTTCATCCTTCCCTCGGGGGGCGGCTTCACGGTCAGTAATGGAGGGGACCCCGGTTGCGGGGCCGGCGTCACCGCCCAGTTCAAAGATGCAGAGTCTCTGCAGTGGTTCGACCCGGCGCTGTGGCAGGCGGCAGAGTCTTCAGACGATCTGGAGAAAGGTCGCTTCCTGTTCTCGGTACACGAGGAGAGCGTACCCTGCCAGTACGACAACGTGGTGTTCCGCGCTGGCTCCTCGTTCCGCGTGGACACTACCTCCAACCAGCCCAGCGTCCCTGTCCAGAGTGTGTCCGTTCTGGGGAAGAAGTTCAGCAGCAGCTCAGAGTTCACCCATTATCTGGGGTCACACTCTGGCCGGCTGCAGTTCCACGGAACCTCATCTCCCAGCGTCGGGGCTTCTGGCTGCAGTGATACCTCTGGCTGTGACTGTGGGAACTCTGCGAATCACAACAGGATCTGCGGCACTGTGACATGCGCTCCTATGAGCTGTAAGAAGCCACTGTACCCCATAGGACACTGCTGTGACGTGTGCAGTGCCATCGTCACCATCCAGTATTCCTCAGGCTTCATCCTTGAGTCTTATCGGATTCGACTGCAGCACCTCTTCCTTGGTCTGCCCTCGTACCAGTCCATTCAGCTAGGCATGTCCAAGGTGCACAAATCTCAGTATTTCCTCGGGGTGATCCCACGTGCGGCTGCAGCTGAGATCCAGATCGTGCTCCTGGATGGGGGGTCTGGTGCGGTGGCAGAGGCCCTGGCTCGGGACATATTGAAGGACGTCCAAGCCCAAGGCTCAAACCTGGGCATAACCGGGGCTGAGTTCCAGGCCTCTTCTGGGGCCACCAGTGGTGACGGGGCAGGGGACAACGCAGGAGTTGTGGTGGGAGCCGTGTTCGGCATCCTGATAGTAGTCGTTGGTCTCCCCCTCCTGGCTGTCCTCTTCCGCAGAGGCGTCATAAAAATGCCAACCATGCCCACCATCGCCATCCCTTCTCTGAGCAGCTTAAGGAGAAGCCAGGAGGAGATCGGGGACTTCACGGACCACGGCTTTGAAAACCCCATCTTCGACAAGCCCACCATGATGCCCGAAGTACCAGGTATCTATGGGACTGAAGCCGCCAACTCTATCTCCCTGACTCCGTCTGGTGTGCATTTTGTTAATCCTGCGTATGATGAGAACGAGACCTCAGTCGATTTCTCTGCCTGAGACTGTGTGTCATGGTATCTGTAAATATTTT

Function

NR:

description
protein amnionless-like

GO: NA

KEGG:

id description
K18259 AMN; protein amnionless

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939216.1 True 1844 mRNA 0.54 1 93016163 93018006
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110487082 otop2 coding downstream 24082 92961669 ~ 92992081 (-)
LOC118937833 otop2 coding downstream 63445 92948575 ~ 92952718 (-)
LOC110487086 LOC106601910 coding downstream 138983 92873659 ~ 92877180 (-)
LOC110516409 LOC106594801 coding downstream 214018 92598880 ~ 92802145 (-)
LOC110486090 LOC105012845 coding downstream 490124 92503706 ~ 92526039 (-)
LOC110487427 LOC106606390 coding upstream 26061 93044067 ~ 93099141 (-)
LOC118937781 LOC106606397 coding upstream 48674 93066680 ~ 93074303 (-)
LOC118937782 NA coding upstream 63659 93081665 ~ 93084620 (-)
LOC110487468 LOC106602060 coding upstream 89243 93107249 ~ 93140129 (-)
LOC110485276 LOC106606397 coding upstream 132462 93150468 ~ 93152962 (-)
G1127991 NA non-coding downstream 10408 92998419 ~ 93005755 (-)
G1127992 NA non-coding downstream 14362 93000560 ~ 93001801 (-)
G1127987 NA non-coding downstream 21118 92994194 ~ 92995045 (-)
G1127964 NA non-coding downstream 74493 92940046 ~ 92941670 (-)
G1127953 NA non-coding downstream 103020 92912706 ~ 92913143 (-)
G1127995 NA non-coding upstream 108 93018114 ~ 93018328 (-)
G1127999 NA non-coding upstream 8850 93026856 ~ 93028991 (-)
G1128000 LOC106602066 non-coding upstream 11121 93029127 ~ 93029720 (-)
G1128002 NA non-coding upstream 14014 93032020 ~ 93033194 (-)
G1128004 NA non-coding upstream 17845 93035851 ~ 93036058 (-)
G1127792 NA other downstream 162055 92850300 ~ 92854108 (-)
G1127739 NA other downstream 261031 92754879 ~ 92755132 (-)
G1127735 NA other downstream 267948 92747794 ~ 92748215 (-)
G1127726 NA other downstream 297696 92715049 ~ 92718467 (-)
LOC110487457 LOC106606216 other upstream 372096 93381051 ~ 93392268 (-)
G1128567 LOC106606382 other upstream 556059 93574065 ~ 93577988 (-)
G1128609 NA other upstream 671679 93689685 ~ 93690320 (-)
G1128616 NA other upstream 684989 93702995 ~ 93707636 (-)
p-ras LOC101485266 other upstream 697192 93715163 ~ 93725341 (-)

Expression

LOC110487425(LOC106606392) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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LOC110487425(LOC106606392) Expression in each Bioproject

Bar chart with 18 bars.
LOC110487425(LOC106606392) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network