LOC110487457 (LOC106606216)


Basic Information

Item Value
gene id LOC110487457
gene name LOC106606216
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 93381051 ~ 93392268 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939265.1
GGTCCATATGAACACTACACTTCAGGAAGAAGGAAATCAATAGCCAATGGGCATTGGCACAACCGGCAGGAGCAATCTAAAGCCTTTCTATTAGAAATACGTAACGCCATAAAGGTATACGGACATGAGGCGTACTTGCGAAGCACTGTAAAGCTATTTCCATATGGAATATAAACTCGGAATACAAGTGTTTCTCCTATTGTTTTGGAGATCGGCTTTAGATGCACTGGTGTCGGAGAATGACGGAGGCTGGTCGTCAAATCCAGAATACAGTTTGACTGATGAGGGTCCTTGCAACATTGACATCTGGGACAAAGCTTCGTTATCACATCGCCAGTTTATCCAACAATATGCCTACTCCAAACCAGTCATCCTGAAAGGTTTCTCTGACAATACGaaaTTCCAGTTCTTGTGCTCCAAGTCGAGCCTGCTGCAGCAGTATGGAGAGAGGATGGTGAGGCTCAGTACTGCCAACACCTACTCTTACAGGAAAGTGGATGTCCGGTTTGAGGAGTTTGTGGACTTGCTGCTGAGGCCTCAGTCTATGGACACACTGGGCAGTGACACTCTGTATTTCTTTGGGGACAACAACTTCACGGAGTGGCACTCTCTGTTTGAGAACTACAAGGCACCACGCTACATGCTGCCTCACACCACGGGGGCCTACAGCTTCGGGATCGCAGGCCCGGGAACCGGTGTACCCTTCCATTGGCATGGACCTGGCTACTCTGAGGTCATCTATGGCAGGAAGCGCTTGTTCCTGTACCCCCCGGACAAGGCGCCCCATTTCCACCCCAACTACACCACCCTGTCCTGGGTCAAAGACACATATCCTTACCTGCTTGAGGAGAAGCCCATAGAGTGCACCATCCGGCCAGGAGAGGTGCTGTATTTCCCTGACCGCTGGTGGCACGCCACGCTCAATCTGGACACCAGTGTCTTCATATCCACCTTCCTGGGCTGACCCCTGACCCGTGACCAAAGCCCTGTTAGAATACTTTCAACATGCATCATTCCTTTTTCCCCTCTGAGGAAATCATAGATTTCTTGCACAgttctcaaccccccccccccccctcagatagcacagttcacacacacacacacagtggttccTGATTAGTGAGGGGGAGCAGGAAGGATGCACTTTTCAAAAGTATCATGTCAACTGAAATGGCACCACACCACTCCTGGCAACTGAAAACTGCCCAAAAAGTTATCAAAAGCTGTATTTCCGTTGTCGTCATAACTACTATGTAGATCAGTGGTCCATCTGTTCAGAGACAAAGAAACAAAGGGGTCAAAGACAATTGGAACGTCTACTGACCAATAGGAGATGAGTGTGGCTTGTTCTGACTGTATTCCCTGGAAGTCACACACTGGTTTTCCTGCCGTTTCCTGCCGTTTTCTGGGACTTTTCCCATCGGTTCCATGGTACCGGGCCAACCAGGTCAAATGCAGCTAATATATTTGACATttattttgaaagaaaataaagtACTTGAAAATAA
>TU1283698
TGTACCCCCCGGACAAGGCGCCCCATTTCCACCCCAACTACACCACCCTGTCCTGGGTCAAAGACACATATCCTTACCTGCTTGAGGAGAAGCCCATAGAGTGCACCATCCGGCCAGGAGAGGTGCTGTATTTCCCTGACCGCTGGTGGCACGCCACGCTCAATCTGGACACCAGTGTCTTCATATCCACCTTCCTGGGCTGACCCCTGACCCGTGACCAAAGCCCTGTTAGAATACTTTCAACATGCATCATTCCTTTTTCCCCTCTGAGGAAATCATAGATTTCTTGCACAgttctcaaccccccccccccccctcagatagcacagttcacacacacacacacagtggttccTGATTAGTGAGGGGGAGCAGGAAGGATGCACTTTTCAAAAGTATCATGTCAACTGAAATGGCACCACACCACTCCTGGCAACTGAAAACTGCCCAAAAAGTTATCAAAAGCTGTATTTCCGTTGTCGTCATAACTACTATGTAGATCAGTGGTCCATCTGTTCAGAGACAAAGAAACAAAGGGGTCAAAGACAATTGGAACGTCTACTGACCAATAGGAGATGAGTGTGGCTTGTTCTGACTGTATTCCCTGGAAGTCACACACTGGTTTTCCTGCCGTTTCCTGCCGTTTTCTGGGACTTTTCCCATCGGTTCCATGGTACCGGGCCAACCAGGTCAAATGCAG
>TU1283699
TGTACCCCCCGGACAAGGCGCCCCATTTCCACCCCAACTACACCACCCTGTCCTGGGTCAAAGACACATATCCTTACCTGCTTGAGGAGAAGCCCATAGAGTGCACCATCCGGCCAGGAGAGGTGCTGTATTTCCCTGACCGCTGGTGGCACGCCACGCTCAATCTGGACACCAGTGTCTTCATATCCACCTTCCTGGGCTGACCCCTGACCCGTGACCAAAGCCCTGTTAGAATACTTTCAACATGCATCATTCCTTTTTCCCCTCTGAGGAAATCATAGATTTCTTGCACAgttctcaaccccccccccccccctcagatagcacagttcacacacacacacacagtggttccTGATTAGTGAGGGGGAGCAGGAAGGATGCACTTTTCAAAAGTATCATGTCAACTGAAATGGCACCACACCACTCCTGGCAACTGAAAACTGCCCAAAAAGTTATCAAAAGCTGTATTTCCGTTGTCGTCATAACTACTATGTAGATCAGTGGTCCATCTGTTCAGAGACAAAGAAACAAAGGGGTCAAAGACAATTGGAACGTCTACTGACCAATAGGAGATGAGTGTGGCTTGTTCTGACTGTATTCCCTG
>TU1283696
TAGAAATACGTAACGCCATAAAGGTATACGGACATGAGGCGTACTTGCGAAGCACTGTAAAGCTATTTCCATATGGAATATAAACTCGGAATACAAGTGTTTCTCCTATTGTTTTGGAGATCGGCTTTAGATGCACTGGTGTCGGAGAATGACGGAGGCTGGTCGTCAAATCCAGAATACAGTTTGACTGATGAGGGTCCTTGCAACATTGACATCTGGGACAAAGCTTCGTTATCACATCGCCAGTTTATCCAACAATATGCCTACTCCAAACCAGTCATCCTGAAAGGTTTCTCTGACAATACGaaaTTCCAGTTCTTGTGCTCCAAGTCGAGCCTGCTGCAGCAGTATGGAGAGAGGATGGTGAGGCTCAGTACTGCCAACACCTACTCTTACAGGAAAGTGGATGTCCGGTTTGAGGAGTTTGTGGACTTGCTGCTGAGGCCTCAGTCTATGGACACACTGGGCAGTGACACTCTGTATTTCTTTGGGGACAACAACTTCACGGAGTGGCACTCTCTGTTTGAGAACTACAAGGCACCACGCTACATGCTGCCTCACACCACGGGGGCCTACAGCTTCGGGATCGCAGGCCCGGGAACCGGTGTACCCTTCCATTGGCATGGACCTGGCTACTCTGAGGTCATCTATGGC

Function

NR:

description
jmjC domain-containing protein 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939265.1 False 1511 mRNA 0.48 9 93381051 93392268
TU1283698 False 700 lncRNA 0.50 2 93381101 93382402
TU1283699 False 607 lncRNA 0.50 2 93381194 93382402
TU1283696 True 654 TUCP 0.49 7 93390102 93392177

Neighbor

gene id symbol gene type direction distance location
LOC110487442 trub1 coding downstream 14191 93365401 ~ 93366860 (-)
LOC110485279 LOC106601935 coding downstream 62445 93312913 ~ 93318606 (-)
LOC110518132 mkk6a coding downstream 69689 93286453 ~ 93311362 (-)
LOC110487450 LOC106602060 coding downstream 194396 93172021 ~ 93186655 (-)
LOC110487466 NA coding downstream 215063 93163011 ~ 93165988 (-)
LOC110487430 LOC106601877 coding upstream 80855 93473123 ~ 93488532 (-)
LOC118937787 LOC106606413 coding upstream 105047 93497315 ~ 93501466 (-)
LOC110487423 gys1 coding upstream 121586 93513854 ~ 93541202 (-)
LOC110487463 LOC106606238 coding upstream 235258 93627526 ~ 93660689 (-)
LOC110487422 LOC106606377 coding upstream 276014 93668282 ~ 93683137 (-)
G1128499 NA non-coding downstream 508 93377857 ~ 93380543 (-)
G1128477 NA non-coding downstream 47588 93333176 ~ 93333463 (-)
G1128473 NA non-coding downstream 61331 93319333 ~ 93319720 (-)
G1128114 NA non-coding downstream 96392 93284388 ~ 93284659 (-)
G1128109 NA non-coding downstream 106112 93272693 ~ 93274939 (-)
G1128520 NA non-coding upstream 11419 93403687 ~ 93414599 (-)
G1128515 NA non-coding upstream 13158 93405426 ~ 93464338 (-)
G1128533 NA non-coding upstream 21535 93413803 ~ 93462307 (-)
G1128519 NA non-coding upstream 23667 93415935 ~ 93446462 (-)
G1128526 NA non-coding upstream 28829 93421097 ~ 93432475 (-)
G1127792 NA other downstream 526943 92850300 ~ 92854108 (-)
G1127739 NA other downstream 625919 92754879 ~ 92755132 (-)
G1127735 NA other downstream 632836 92747794 ~ 92748215 (-)
G1127726 NA other downstream 662584 92715049 ~ 92718467 (-)
LOC110516409 LOC106594801 other downstream 746327 92598880 ~ 92802145 (-)
G1128567 LOC106606382 other upstream 181797 93574065 ~ 93577988 (-)
G1128609 NA other upstream 297417 93689685 ~ 93690320 (-)
G1128616 NA other upstream 310727 93702995 ~ 93707636 (-)
p-ras LOC101485266 other upstream 322930 93715163 ~ 93725341 (-)
G1128731 LOC106595797 other upstream 614310 94006578 ~ 94116184 (-)
LOC110487457 LOC106606216 other upstream 7700 93381051 ~ 93392268 (-)

Expression


Co-expression Network