aspdh (LOC106606414)


Basic Information

Item Value
gene id aspdh
gene name LOC106606414
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 93503292 ~ 93513218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939261.1
CCCACAATCCTCTGAGAAGGGGTGTCAGTTGGAATGTAGATTGCGAAGGAGAAGgtttggagagaaagagagaaagagagcagggagaggaatTCACCGGAACCATGACTGACATGTTGCCAGTGATGAGAATTGGAGTTGTGGGATATGGACATTTAGGGCAGTACCTTGTGGAGCGGCTCCAGAGAGAAGGGGCCCAGgtgggcctgacactggtcttTGTGTGGAACAGAAACACTGACAAACTCAGGGAATCAGTGGCTGAGGAGCTCATTCTACACAACCTCCCAGACTTTACAGACAGGGGTGCTGATGTGATTGTGGAGGTGTGTCATCCCAAAATTGTAAAAGACTTTGGAGTCCAATTCCTCTCTAAGGCCCATTTTCTGGTGggctctccttcagccctctcagACCCACAGCTGAACCAGGAACTGCGCCAGGCTGCAGAGCATCATGGGAGGACCCTATATATCCCCAGTGGTGCATTGTGGGGAGGCCAGGATATCCTGAGACTCAATGATAGTGGATCTTTAAAGGCACTGTTCATCCGGATGTCCAAGCACCCGTCATGTTTCCGTCTGACAGGAGATGTGCTGTCTGATTGGACAGAGGATGAGGGGAGGCGGGTCTTATTCAGTGGCTCCGTGGCAGAGCTCTGTCCCGTTGCCCCTAACAACGTCAACACCATGGCGGCAGCGGCCATCGCAGCGGGGACCCTGGGTTTCGCTGGCGTCCAGGGGGAGATTGTGTCGGATACGGCactaagtgattaccatgtggtggaggtggaggttacTGGTGCCAATGGCTTCACAGTGCATACAGTGAGGAGGAACCCAGCCAAACTTGGAGCTGTAACTGGGAGTGCCACCTACAACTCCTTCTGGAGCAGCTTACTGGTGTGTAAGGGACATGGTGGCCGGGTTTACTTGTGCTGAAGAGGGAGGGATTTCAGAAGACAATTCCCTCTACCAACCAAACACTCACAACACTATGGTACtgaaacacacactacacaacactatggtactgaaacacacactacacaacattatggtactgaaacacacactacacaacactatggtactgaaacacacactacacaacactatggtactgaaacacacactacacaacactatggTACTGAAACACACACTACGGTACTGAAACACACACTACGGTACTGAACAGTCTGCAGTGGCTGTGTCTGTAGTTACTGATCATGTGTGAGCAAAGTTCGGCTTGCTTCATATAATATGGTGTGACTGTATCAGGATGACAAAGATGGGCTTGCTTCATATAATATGGTGTGACTATCAGGCTCGACAAAGATGGGCTTGTTCATATAATATGGTGTGACTATCAGGCTCGACAAAGATGGGCTTGTTCATATAATATGGTGTGACTGTATCAGGATGACAAAGATGGCCTTGCTTTATAGAATATGGTGTGACTGTATCAGGATGACAAAGATGGCCTTGCTTTATAGAATATGGTGTGACTGTATCAGGATTGACAAAGATGGGTTTGCTTCATATAATATGGTGTGACTGTATCAGGATGACAAAGATGGGCTTGCTTCATATAATATGGTGTGACTGTATCAGGATTGACAAAGATGGGCTTGCTTCATATATGGTGTGACTGTATCAGGATGGACAAAGATGGGCTTGCTTCATATAATATGGTGTGACTATCAGGCTCGACAAAGATGGGCTTGTTCATATAATATGGTGTGACTGTATCAGGATTGACAAAGATGGGCTTGCTTCATATATGGTGTGACTGTATCAGGATGGACAAAGATGGGCTTGCTTCATATAATATGGTGTGACTATCAGGCTCG

Function

NR:

description
PREDICTED: putative L-aspartate dehydrogenase

GO: NA

KEGG:

id description
K06989 nadX, ASPDH; aspartate dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939261.1 True 1855 mRNA 0.47 8 93503292 93513218

Neighbor

gene id symbol gene type direction distance location
LOC110487438 LOC106606384 coding upstream 6277 93490576 ~ 93497015 (+)
LOC110487416 LOC106606345 coding upstream 30704 93433224 ~ 93472588 (+)
LOC110487420 LOC106606345 coding upstream 82884 93403043 ~ 93420408 (+)
LOC110487443 LOC106593034 coding upstream 125522 93366895 ~ 93377770 (+)
LOC118936334 LOC106606343 coding upstream 141145 93352992 ~ 93362147 (+)
LOC110534257 dpod1 coding downstream 31619 93544837 ~ 93602139 (+)
LOC110485283 LOC106606237 coding downstream 195764 93708982 ~ 93717463 (+)
LOC118937785 LOC106601943 coding downstream 322797 93836015 ~ 93867992 (+)
LOC118937789 NA coding downstream 393817 93907035 ~ 93922982 (+)
LOC110514006 LOC106603827 coding downstream 410093 93923311 ~ 93934388 (+)
G1128123 LOC106601877 non-coding upstream 14666 93482080 ~ 93488626 (+)
G1128139 NA non-coding upstream 102530 93399190 ~ 93400762 (+)
G1128117 NA non-coding upstream 122769 93378233 ~ 93380523 (+)
G1128166 NA non-coding upstream 174931 93327893 ~ 93328361 (+)
G1128198 NA non-coding downstream 5496 93518714 ~ 93519097 (+)
G1128207 NA non-coding downstream 30118 93543336 ~ 93543572 (+)
G1128211 NA non-coding downstream 39671 93552889 ~ 93553703 (+)
G1128212 NA non-coding downstream 40645 93553863 ~ 93557117 (+)
G1128216 NA non-coding downstream 61701 93574919 ~ 93575707 (+)
G1128189 NA other upstream 46332 93455845 ~ 93456960 (+)
G1128105 NA other upstream 231032 93271888 ~ 93272260 (+)
LOC110514489 LOC106606301 other upstream 611699 92877528 ~ 92940625 (+)
G1127628 NA other upstream 841227 92651458 ~ 92662065 (+)
G1127555 LOC106601958 other upstream 933259 92537170 ~ 92570033 (+)
G1128318 NA other downstream 329551 93842769 ~ 93843097 (+)
LOC110485300 LOC106581592 other downstream 552469 94065500 ~ 94116043 (+)
G1129047 NA other downstream 1224551 94737769 ~ 94833934 (+)
G1129576 NA other downstream 1681168 95194386 ~ 95195280 (+)

Expression


Co-expression Network