LOC110534257 (dpod1)


Basic Information

Item Value
gene id LOC110534257
gene name dpod1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 93544837 ~ 93602139 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939243.1
CACGGGTTTCCGCTCTATTGACCAATCACCACGTGCGCTGTGGAAATCCTCCGCTCTTTCCGGGGGTGGAAGTTCACGAATTAAACGCACAAGTGGCGGGAGTTGTTGTCAAGTAAGATCTGATCGAAGTCACCACATTGAACAAAGATGGATGCTAAAAGGCGGAATAGCGGTCTGCCGAGGGGCGGGGCGTCCCAGGCCAAGCGTGGTAAAACTGGCGGGGATTGGGAAGACAGCCCGTCGATCTTCGAGGAGGAACTCGCCCTGTTCGAAGAAGCCGATATGGAggcggaggagagggaaggacaggCGGGGCATGACGTCATCCCTGTtgGTGAGCTGTTCTCTACTGACCTCAACCCCCGATGGCGTCGGCCACAGGCCGCCCCTCTTAACCCGGACTCTGACACCCTGGTCTTCCAACAGATTGACCTCGACTACTATTTAGGGGCTGCTGTGGCTGGCATGCCAGGTCAGTCTCAGGGGAATGTACCAATAATCCGCATGTTTGGGGTGACTGACAGCGGGAACAGTGTGTGCTGCCACGTGCACGGCTTTGCCCCCTATTTCTACATCCCTGCCCCCAATGggtTCACCAGTGATCATTTGAGTGAGTTCAAAAGGGAGCTTAACTCTGCTGTGCTGAAGGACATGCGCTACAACAAGGACAACATGTCGGTCACTGTGCTGGCGGTGGACATCACACACAAAGAAAgTATGTATGGTTACCATGGGAAACGGATTGCGGACTTCCTGCGCATCACCATGGCAATGCCTCGTCTGATTGCCCCGGCGAAGAGGCTCCTGGAGCAGGGATTTAAGTTTGGACCTTTCCCCATTCAGAGCTTCTCTTCCTACGAGGCTAACATCGACTTtgagatcagGTTTATGGTGGACAGCGATGTGGTGGGTTGCTGCTGGATTGAGCTGCCCAAAGGGAAGTACCGGGTGAGGGAGGAGAGCATTTTGGGGGAGACGGACGCTCACCACCCAGGCAAGgTGTCTCTGTGTCAGTATGAGGTTGATGTGGGATGGACCCAGCTGATCAGTCACCCAGCAGAGGGAGAGTACCAGAGGATCGCTCCTCTCAGGGTTCTCAGCTTTGACATTGAGTGTGCTGGAAGAAAAGGGATTTTTCCCGAGGCAGAGAAAGACCCAGTGATCCAGATAGCCTCCATGGTGCAGCGACAGGGAGAGAAGGAACCTTTCATCCGCACCGTCTTCACCCTCCAGTCCTGCTCCAGCATCGTGGGCTCCCAGGTCCTGTGCTTCACTAAAGAGAGCCAGTTACTACAgAGCTGGGCTGAGTTTGTGAGGACAGTGGATGCAGACATCATCACTGGGTACAACATCCAGAACTTTGACCTTCCCTACCTGCTGAACAGAGCAGCTACCCTGAAGGTCAAGCTGTTCCCCTACCTGGGCAGAGTACTGGGCATCAAGTCAGTCCTGAGAGACTCCAGTTTCCAGAGCAAACAGATGGGCCGCAGAGAGAACAAGATCCTCAACATGGAGGGACGAGTTCAGTTTGACCTGCTCCAGGTGCTGCTGAGGGACTACAAACTGCGCTCATACACACTCAACGCTGTCAGCTTCCACTTCCTGCAAGAACAGAAGGAGGATGTTCAGCATTCTATCATCACAGATCTGCAGAATGGTAATGAGCAGACCCGGAGGCGCCTGGCGGTGTACTGCCTGAAGGATGCCTACCTGCCCCTGCGTCTGCTGCAGAAGCTGATGTGTGTGATCAACTACATGGAGATGGCCAGAGTCACCGGGGTTCCCCTCAcctacctgctctccagaggcCAGCAGATCAAAGTGGTGTCCCAGCTACTGCGGCAGgcaaTGAAACAGGGGCTGGTCATGCCAGTGGTGAAGCCGGAGGGAGGTGAAGACTACACTGGAGCTACAGTCATTGAGCCAGAGAAAGGATACTACAGCGTCCCCATCGCCACCCTGGAtttctcctctctgtatccctccatCATGATGGCCCACAACCTCTGTTACACCACCCTGCTTCAGAAGGGCTCAGCGGAGAAGCTGGGTCTGACCCCAGAGGACTTCATCAAGACTCCCACCGGAGACCTGTTTGTTAAGAGCTCGGTGAGGAAGGGACTTCTGCCTGATATCCTGGAGGACCTGCTCTCTGCCAGGAAGAAGGCCAAAGCGGAGCTGAAAAAGGAAACGGATCCTTTCAAGAAACAGGTCCTTGACGGTCGACAGCTCGCTCTCAAAATCAGCGCCAACTCCGTCTATGGCTTTACAGGGGCTCAGGTGGGCAAGCTGCCCTGCCTTGAGATCTCACAGAGTGTTACTGGGTTTGGCAGACAGATGATTGAGCAGACCAAACAGCTGGTGGAATCCAAGTACACCATCGCCAACGGTTACCAAGCCGATGCCAAGgtcatcTACGGGGACACGGACTCCGTCATGGTCAAACTGGGCGTGGACACTGTGAGCAGGGCCATGGAGGTTGGGAGGGAGGCGGCAGAGTGGGTCTCCTCCCACTTCACCCCTCCCATCAAACTGGAGTTTGAGAAGgTGTACTACCCCTACCTGTTGATCAACAAGAAGCGCTACGCAGGCCTCTACTTCTCCTCCAGCGCCGACACTCACGACAAGATGGACTGCAAGGGTATCGAGACGGTCCGCAGGGACAACTGTACCCTGGTGGCCAATCTGATCAACACCTGCCTGCAGACCATTCTGATAGACAGAGATCCCCAGGGTGCGGTGGCCCACGCCAAAGAGGTGATCTCTGACCTGCTGTGTAACCGCATCGACATCAGCCAGCTGGTTATCACCAAGGAGCTGACCCGCACAGCCCAGGAGTACGCTGCCAAGCAGGCGCATGTGGAGCTGGCTGAGAgGATGAAGAAGAGAGACGCGGGTAGCGCCCCCCAACTGGGAGACAGAGTTCCCTATGTCATCATCAAAGCTGCCAAAGGAGTAGCAGCATACATGAAGTCTGAGGATCCAATCTATGTTCTGGAGAACAACATTCCCATTGACACCCAGTACTACCTGGAACAACAGCTCTCCAAGCCACTGCTCCGCATCTTTGAGCCCATCCTGGGAGAGAGCAAAGCAGAGAGCGTCTTACTGAAGGGGGATCACACGCGCTGTAAGACAGTGTTGACCTCCAGGGTGGGGGGGCTCATGGCCTTCGCCACCAAGAGGAGCGCCTGTATCGGTTGCAGAGCAGTGCTGAAGGACGATGCGGCTGTGTGTGATTTCTGTAAGAAGAAGGAGTCGGAGCTGTACCAGAAAGAGATCTTCCACTTAAGTACTCTGGAGGAGCGCTTCTCTCGCCTGTGGACACAGTGTCAACGCTGTCAGGGCTCTCTCCATGAGGATGTgctctgtaccagCCGGGACTGTCCCATATTCTACATGAGGAAGAAGGTGCAGAAAGATCTGGATGATCAGGAGAAGCTGGTGTCTCGCTTTGGATGGTGAGAGACAGAACCAACAGACTCCATATTCACCggctcccccctctccccctcgtTCCCTCTCCTGGAAAGGATTTGTACTCTATTGTCTTGCAAGAATTGTAAATGTTACACTTATTCTCTATTTTCTTGAAATATGAATCCAAATAAATGGCATCTTTTTGTAGAA
>TU1283325
CCTGTTCCCCAACGAGGTGGCCACCTTCATAGGACCCATAGTATCTAATGCTATCTGCTTCCATGGTGTATTGCATTTAATGTGTTGACCTGCTGTCCTGCCTAGGTTGCTAACCTTTTGCTCCTAATGTAACAGTTGTTAAAGTActatgtgaatttcaccaggttcatatatGAATATGTCGTGTTGATTTGttatgcatgcctgcatcctgggagaaggggagtgtgtacttacgttttgcccggcgtgctcgtgctcaagtcatttttgatgcactgagagagATCTTCCACTTAAGTACTCTGGAGGAGCGCTTCTCTCGCCTGTGGACACAGTGTCAACGCTGTCAGGGCTCTCTCCATGAGGATGTgctctgtaccagCCGGGACTGTCCCATATTCTACATGAGGAAGAAGGTGCAGAAAGATCTGGATGATCAGGAGAAGCTGGTGTCTCGCTTTGGATGGTGAGAGACAGAACCAACAGACTCCATATTCACCggctcccccctctccccctcgtTCCCTCTCCTGGAAAGGATTTGTACTCTATTGTCTTGCAAGAATTGTAAATGTTACACTTATTCTCTATTTTCTTGAAATATGAATCCAAATAAATGGC
>TU1283323
accacacacaacgcagagttacagcggtgCAGTATATAGCACCGGCTACACTGGCAGATCTTCCACTTAAGTACTCTGGAGGAGCGCTTCTCTCGCCTGTGGACACAGTGTCAACGCTGTCAGGGCTCTCTCCATGAGGATGTgctctgtaccagCCGGGACTGTCCCATATTCTACATGAGGAAGAAGGTGCAGAAAGATCTGGATGATCAGGAGAAGCTGGTGTCTCGCTTTGGATGGTGAGAGACAGAACCAACAGACTCCATATTCACCggctcccccctctccccctcgtTCCCTCTCCTGGAAAGGATTTGTACTCTATTGTCTTGCAAGAATTGTAAATGTTACACTTATTCTCTATTTTCTTGAAATATGAATCCAAATAAATGGC
>TU1283324
AGAACTGTAACATATTTATTTTCATAATTAAATTTAATGCGTATAGAATCACTATTTTTCTACCTTCATCTTTTTTTCTGTCCTAAATACTTAACATGAGTCTCCCTGCATGGCTCTCAACATTACACTAGTGTCTCCTAGATTGGTTGGAGTCCCATCTTATAGCAAGGCCATTGCCATGGGGTACCAGGGCTGTGCATAGAAGGCCACTTTGCCACAATACACACTGACATCCTCTGGCCCCTCTTCTTTTTCTGGGATGACTTGTATTAGAACCCAATTTCGTATTACTACGAGTTCTGCCTGCCTTCCCCCTATTTCTGCTTGGGTTCCTGCTTTACTCCACCAAGTCTGCCTCTCTTGGGGAGCGAATCCtagcagtttttatttttttatttaattttattttattaaggGCTGCTTGCCATTTGAAGGTTAATTCCGACCATTTTCTGCTATTCACGACTACTGCATTTCCTACTTGAGGAAATCTATTCTGACCCAGATTTTCTCTCTGACTTTCCACCATCATCTGCCTGCGCTGACGATGTTGAAAATAATTCACTCCTGTTTCCATACCTTCACCTTGAGATCTTCCACTTAAGTACTCTGGAGGAGCGCTTCTCTCGCCTGTGGACACAGTGTCAACGCTGTCAGGGCTCTCTCCATGAGGATGTgctctgtaccagCCGGGACTGTCCCATATTCTACATGAGGAAGAAGGTGCAGAAAGATCTGGATGATCAGGAGAAGCTGGTGTCTCGCTTTGGATGGTGAGAGACAGAACCAACAGACTCCATATTCACCggctcccccctctccccctcgtTCCCTCTCCTGGAAAGGATTTGTACTCTATTGTCTTGCAAGAATTGTAAATGTTACACTTATTCTCTATTTTCTTGAAATATGAATCCAAATAAATGGC

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0000084 mitotic S phase biological_process
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0007346 regulation of mitotic cell cycle biological_process
GO:0043137 DNA replication, removal of RNA primer biological_process
GO:0019985 translesion synthesis biological_process
GO:0045004 DNA replication proofreading biological_process
GO:0006287 base-excision repair, gap-filling biological_process
GO:0006297 nucleotide-excision repair, DNA gap filling biological_process
GO:0043625 delta DNA polymerase complex cellular_component
GO:0008408 3'-5' exonuclease activity molecular_function
GO:0003887 DNA-directed DNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939243.1 False 3630 mRNA 0.54 27 93544837 93602139
TU1283325 False 624 TUCP 0.46 3 93593010 93602125
TU1283323 False 394 lncRNA 0.48 3 93594022 93602125
TU1283324 True 928 lncRNA 0.43 3 93596289 93602125

Neighbor

gene id symbol gene type direction distance location
aspdh LOC106606414 coding upstream 31619 93503292 ~ 93513218 (+)
LOC110487438 LOC106606384 coding upstream 47822 93490576 ~ 93497015 (+)
LOC110487416 LOC106606345 coding upstream 72249 93433224 ~ 93472588 (+)
LOC110487420 LOC106606345 coding upstream 124429 93403043 ~ 93420408 (+)
LOC110487443 LOC106593034 coding upstream 167067 93366895 ~ 93377770 (+)
LOC110485283 LOC106606237 coding downstream 106843 93708982 ~ 93717463 (+)
LOC118937785 LOC106601943 coding downstream 233876 93836015 ~ 93867992 (+)
LOC118937789 NA coding downstream 304896 93907035 ~ 93922982 (+)
LOC110514006 LOC106603827 coding downstream 321172 93923311 ~ 93934388 (+)
LOC118937788 NA coding downstream 377539 93979678 ~ 93990780 (+)
G1128207 NA non-coding upstream 1265 93543336 ~ 93543572 (+)
G1128198 NA non-coding upstream 25740 93518714 ~ 93519097 (+)
G1128124 LOC106601949 non-coding upstream 29144 93473124 ~ 93515693 (+)
G1128123 LOC106601877 non-coding upstream 56211 93482080 ~ 93488626 (+)
G1128228 NA non-coding downstream 2158 93604297 ~ 93604562 (+)
G1128230 NA non-coding downstream 6451 93608590 ~ 93608821 (+)
G1128232 NA non-coding downstream 11620 93613759 ~ 93613995 (+)
G1128233 NA non-coding downstream 13262 93615401 ~ 93615628 (+)
G1128234 NA non-coding downstream 13859 93615998 ~ 93616695 (+)
G1128189 NA other upstream 87877 93455845 ~ 93456960 (+)
G1128105 NA other upstream 272577 93271888 ~ 93272260 (+)
LOC110514489 LOC106606301 other upstream 653244 92877528 ~ 92940625 (+)
G1127628 NA other upstream 882772 92651458 ~ 92662065 (+)
G1127555 LOC106601958 other upstream 974804 92537170 ~ 92570033 (+)
G1128318 NA other downstream 240630 93842769 ~ 93843097 (+)
LOC110485300 LOC106581592 other downstream 463548 94065500 ~ 94116043 (+)
G1129047 NA other downstream 1135630 94737769 ~ 94833934 (+)
G1129576 NA other downstream 1592247 95194386 ~ 95195280 (+)
LOC110516622 LOC105012861 other downstream 1610165 94934381 ~ 95232039 (+)
G1128224 NA non-coding upstream 1960 93591834 ~ 93592062 (+)
G1128219 NA non-coding upstream 7713 93585948 ~ 93586309 (+)
G1128217 NA non-coding upstream 17013 93576072 ~ 93577009 (+)
G1128216 NA non-coding upstream 18315 93574919 ~ 93575707 (+)
G1128212 NA non-coding upstream 36905 93553863 ~ 93557117 (+)

Expression


Co-expression Network