LOC110487422 (LOC106606377)


Basic Information

Item Value
gene id LOC110487422
gene name LOC106606377
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 93668282 ~ 93683137 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939554.1
AAGGTGGATAAGACTTCTTCTTCATCTTATGCTCTAATAACGAAGCTGTTTTATTCTGACTCTGTCCTTACAGAACTCATACAGAGAGTTAAAGAGGAACATAAAGCCAGTCTGAAGAAGAAGTTTAGGTTTGTGTTTGAAGGCACTGCAGAGGAAGAAACTCCCCTGAACAGCATCTACACACAGCTCTATATCACGCTGGGAGAGAATGAAGGAGTTAATAAAGAACATGAGGTTTGGCAGATTGAATACACATCCAGAAGAGAAACATCGTCGGACACTCCAATCAACTCTAATGACATATTCAAACCCTTAGCTGGacaagagaaagaagagaagagaccCATTAAAACTGTGCTGACAAAGGGCATtgctggcattggaaaaacagtctcCGTGCAGAAGTTCGTCCTTGACTGGGTCGAAGGAAAAGCCAATCAGGATTTGGATTTCATCTTTGTCCTCCCTTTCAGAGAGCTGCATTCGATCAAAGATGATGAGTTAAGTCTTCATGGACTTATAAATGACTTCCACCCTGAACTTACAGAGATAAAAGATGCAAAGATATATGCTACCAGcaaagttctgttcatctttgatggtctggatgaaAAGCGACATCCACTAAAGTTCAATACCAAGAGGGTGACTGATGTTACAAAGACAGGTCACAATGTAGATGTACTGGTGACAAACCTCATCGAGGAGAAGCTGCTTCCCAAAGCTCTGATCTGGATAACCTCTAGACCTGCAGCAGCCAATCAGATTCCCCGTAGATACATCAACCTGGTGACAGAAGTAAGAGGGTTCGATGAGCGACAGAAAGAGGAGTACTTCAAAAAGAGGGTCAAGAATGGGGAAGTTGCCAGAAGAATCATCGCACACATTACAACATCGAgaactttccaaatcatgtgccACATAccagtcttctgttggatttcCGCTAAGGTTCTTGAGGAACTGTTGAGAGAAAATGTGAATGGAGAAATCCCTACAactctgactgagatgtacaCTCACTTCCTGCTCATTCAAATACAGCTGGCACAAAAGGATCCTGGGCATGAGAGGGATACACAGAAGATCTGGGAATCAAATAAAGACTTCCTTCTGAAGCTGGGGAAGCTAGCGTTTGAACACCTGGAGAAACGCAATCTCATGTTCTATGAGGAAGACCTGAATGAATATGGCATTGACATCAGTGAAGTTGCAGTCTACTCTGCGTTGTGCACAGAAATCTTTAAAGAAGAGAAGGTGTACAAAAAGAAGGTGTATTGCTTCATGCATCTGACCATTCAGGAGTTTATTGCTGCCCTCTTTGTTTTCCACTGTTTCACAACCAAGAGCCTCAAGACGTCATCGAGCCTCAAGTCTTTCCTGATGGAAGGTTCAGAACCATATCTCAAAGCTATCTTGGAGAACGAGCCTGTAGACCTTCCCTTGGATGAGTTGATGGAGATTACCATGTACAATTCTGTGTccagagagaatggagagatggacaTGTTCCTCCGCTTCCTTCTTGGAATGTCTATGGAATCCGTTCAGTGCCTCCTACAAGGCCTGCTGCCAAAGACAGAGAACAGTTCAGAGATTGTTAAAGAAATGAAGATAATACTCAAGGAGATGGATCTAATTGATGTCTCCCCTGAGAGGTGCCTCAATCTCTTCTCTTTGACTGAAGAAGTTAGAGACCATTCCCTACATGAAGACATTCAGAGATATCTGTCAGAAAAGGAAGCAGACAGAGAGCTCTCACCCGCTCATTGCTCAGTACTGGCCTATGTACTTCTGATGTCAGAGAAGGTGTTGGATGAGTTTGTCCTGAAGAAATATAAAACCTCCCAAAAGGGTTTTTTCAGACTTCTTCCAGCTGTGAGGAACTGCAGAAAGGCAATaattgaaggcgTTTATCTGGATAGATGGTACTGTGCAGCGTTGGCCTCAGCTCTCCAGTTACCAAACTCACCATTGAGAGAACTGCACCTGATAGATTTAATCTTGATGGATTCAGAAGTGGATGTGCTCTGTACTGGACTGTCTAGCCAAGACTGTAAACTGGAAGCACTGAGTCTCTGCGGGAATGGACTCGTAAAAAAGGGCCGTGATAATTTGGTCTCCTCTATAAAAACAGTTCTCAGCTGCAACCTGAGAGAGCTGGGCTTGAGTAACTTCACACTGCGGGATTCTGTAGTTGAGGTACTCTCTACTGGACTAGGGAGTCAACACTGTAAACTGGAGATACTGAGGCTGAATCGAAATACACTAACAGACGACTTCTGTGAAGTACTAGTCTCCGCTATCAGCTCAAATTCCTCTCATTTGAAAGAGCTGGACATTGTTCACTGTGACCTGATCGATTTAAGAGTGGAGCTGCTCTCCACTGGACTCAAAAGTccacactgtaaactggagaAATTGAGGTCAGTATGTTTCTTGTTCTCAGGTTTGTATTTCTTGAAGGAtataggcaggGCAGTGATCAGGGGGAGGCTCTATCAATGTAATCTCAATAACAAAAGTTGTGAAGCACTGGCGTCAGCTCTTCAGACCATCCCCTcacacctgacagagctggatctgagtaacaatgacctgaaggattcaggagtgaagctgctgtctactgcactggggaatccccactgtaaactggagactctgagGCTGCCGTTCTGTAGAGTCACAAAGGAAGGCTGTGATTATCTGGCTTCAGCACTAACGTCAAACCCCTcccacctgagagagctggacctgagctacaattacccaggagactcaggagtGAAGATGCTCTCTGCTACTATGGAAGATCCAGCCTGTAGACTGAACATCAATATTGACCAGAACGATGAGTGCTGGGTGAAACTGGAGCTGCTGAAGAAGTATGCCTGtgatctcacactggacccaaacacagcaaACAAACACCTTTCTCTGTCTGAAGGAAACAGAGTGGTGAGATATGAGATTAAGAAACAgccgtatcctgatcacccagagagattttaTGACGCTTTTCAGGTTCTTTGTAGAGAGGCTCTGACTGAGCGCCATTACTGGGAAACGGAGTCAACTGATGACGTTGTTCTCGGAGTGACGTACAAAGGAATCAAAAGAAAAGGCAGCATCTCCAATGACGTTGTCATTGGACACAATGACAAGTCCTGGTGTATGGAGTACAAAACACATTTTTGTCATAATGGCGCAGATATTACATTCCCCCCCTTTAGGAACCACTCTAGGCACAGAataggagtgtatctggactggccggccggcactctgtccttctacaCGGTCCTCTCTGAAACATTGACCCATATGTACACATTCCACAccacattcactgagcccctctatccagctTTTGGACTAGGTAGCTGTAACCCTTGCTCAGTGTCCTTGTGCCAGGTAGAGTAGCCTTCTCGGGGTCCTGGAGGAACACCTGGGTCTCCATgacaacagtcacacacacaaccgTGGGACTTGATGCGGTTGACAGTGGTCATGACTTCAGATATGGACATTAATACATCAGATGATTAGATTATATTCCTGTGACTGTACATCCATGTTCTGTAATGTTAGTGCAGTTATGTGAAATGCTTTTGACTTTGAATAGGATACAATTTGTTGTTAAGTGTGATCAAATACTTTGTAAATATTAGTTTGTTAAATATGTGTTGCTTCAAACAGGAACCACAACACACCCGTCTGTCTGTGTACAGGAGGCCAGAGTTTCTCAAGAGAAATAAAGCTTTGGTTTAGA

Function

NR:

description
NACHT, LRR and PYD domains-containing protein 12-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939554.1 True 3775 mRNA 0.44 9 93668282 93683137

Neighbor

gene id symbol gene type direction distance location
LOC110487463 LOC106606238 coding downstream 7593 93627526 ~ 93660689 (-)
LOC110487423 gys1 coding downstream 127080 93513854 ~ 93541202 (-)
LOC118937787 LOC106606413 coding downstream 166816 93497315 ~ 93501466 (-)
LOC110487430 LOC106601877 coding downstream 179750 93473123 ~ 93488532 (-)
LOC110487457 LOC106606216 coding downstream 276014 93381051 ~ 93392268 (-)
p-ras LOC101485266 coding upstream 32026 93715163 ~ 93725341 (-)
LOC118937784 LOC105029052 coding upstream 45882 93729019 ~ 93795410 (-)
LOC118937783 LOC105029051 coding upstream 119931 93803068 ~ 93839627 (-)
LOC110514005 LOC106601187 coding upstream 261501 93944638 ~ 93973143 (-)
LOC110507112 LOC106596372 coding upstream 451992 94135129 ~ 94138662 (-)
G1128597 NA non-coding downstream 16033 93645003 ~ 93652249 (-)
G1128585 NA non-coding downstream 51358 93615986 ~ 93616924 (-)
G1128581 NA non-coding downstream 60520 93607464 ~ 93607762 (-)
G1128579 NA non-coding downstream 63971 93603968 ~ 93604311 (-)
G1128575 NA non-coding downstream 80170 93587811 ~ 93588112 (-)
G1128621 NA non-coding upstream 29702 93712839 ~ 93714438 (-)
G1128622 NA non-coding upstream 44301 93727438 ~ 93727786 (-)
G1128624 NA non-coding upstream 52999 93736136 ~ 93737916 (-)
G1128640 NA non-coding upstream 116627 93799764 ~ 93800180 (-)
G1128649 NA non-coding upstream 138635 93821772 ~ 93822495 (-)
G1128567 LOC106606382 other downstream 90294 93574065 ~ 93577988 (-)
G1127792 NA other downstream 814174 92850300 ~ 92854108 (-)
G1127739 NA other downstream 913150 92754879 ~ 92755132 (-)
G1127735 NA other downstream 920067 92747794 ~ 92748215 (-)
G1128609 NA other upstream 6548 93689685 ~ 93690320 (-)
G1128616 NA other upstream 19858 93702995 ~ 93707636 (-)
G1128731 LOC106595797 other upstream 323441 94006578 ~ 94116184 (-)
LOC110487111 LOC106606373 other upstream 496871 94179962 ~ 94190977 (-)

Expression


Co-expression Network