LOC110485283 (LOC106606237)


Basic Information

Item Value
gene id LOC110485283
gene name LOC106606237
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 93708982 ~ 93717463 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939254.1
GGTGCTGGATCTCTCCAACCTGGTAACCTGGTTACCTGGTATTCCAACCTGGTAATCATCCTGCTCATGACTACAGGGTGTCTGGGTCAGGACAACGGGAGTGTGACTTACACCCCAAGGAGAGTCTGCTCCTTAGAGGGCTCTTCTGTGACCATGCCCTGCTCTTACACATTTCCCAAGGGTCACAAAGTCACAACAGCTTTCTGGTTCAAAGGTCAAGTGCCTGGTGCTGAGTCTCTGGATCTGAATTTGAACCCTGAGTACAAAGGCCGTGTGGAGTATCTAGGGGACAGTAACCAACTATGTACACTGAGAAtcacagacctgagagagagCGATTCAGGAACCTACAGCTTCCTGTTTGGGACTGACGTCAATCCTGGGGGATGGATGGGGAATCCAGGAGTCAGGTTAAATGTGACAGGGCTCCATGTTGATTTGACCCCTGACCTAGCTTTGGACGGCGAGTGGGCAGACCTTACCTGTGGCTCCTGCTTCTTGAGTGAAAATCCCACCTACACCTGGTACAGGGACAAACAGCCTTTGAACTACACCAACAAGGTCAAGGTTATGGCCAACTACCTGGAACTAGACCCGGTAGGCAGGGAAGATGCAGGCAGCTACTCCTGTGCGGTGAGCGGCAGAGAGGATTCCCCTGGTCCGGCAGTGATCCTTGTAGTGGGATACTTCCCAAAGAACACCTCAGTGTCAGTCACAGTCAGTCCCTCCGGTGAATTAGTGGAGGGCAGAtcagtgactctgacctgcagcagtgatgccaacccaccAGTGGACAAATACACCTGGTACAAGAAGAATGAAGAACGGACGGGGTTCTCAGAAAAAGGATCAGGGCAGAGTTACGTCATCCTTAAAATGAGCAATGAGGACAGCGGGCAGTACTTCTGTAAGGCTGAGAATCAATACGGACCACTTGACTCTGCAACTGTGCAACTCAGTGTAACAGGTAAACCAGTGTTTCCCTGGGCTCCCGTTGTGGGGGTGGTGGCTGTGTTGGCAGCTGGAGCTCTGCTAGTCATCCTCTATGGCACATTGAAGAAGAGGAAAGCCCCAAGAGGAATGAACTTTATCGGGGAGGCACAGATGGTACCTTGTGGTAAACCGACACACAAGGCGCAGTCTGATGACACATACATGACTCTGAATAAAAGGACAATGTCTCCTGAGTATGACACTCTGGCTaACGTCAGAAACACTGTTGGCTGAAGAAGACCCTATGCCTGCGACCTCAACATAAATAGGGTTAGAAGTGAACACCATATAACCGGTTGAAAATTATTAAAAAGGGTATAATTTTTAAATGATCAAATTTAGAGTTGTATATTTGTTTTTCTATAGGTACGCCTaaaggtttttaggcaaaataacccaTTCAAAACGGAAAGCTAATTGAACGTGGGAATATGCCAGGGCTATTGTATAAATAGAACAAAAACGAACTAAACGTTTAAGGGATCTGAATTTTAGTTTAAATATTTTGCTACAATGACAGTTATCTACTCAACTCGTTCCTTTCTTTAAGCATGTGCACGTAGTAAGTACACCATCATACCTTTCAAAGGCATTAAGTCAtttgtttaatttgtatttaattctaagtcacagcactctctttctcttggtcctcatctttgtaagtcaccttgctTTAGCACCTGTGCGTTTgatcagtttctttatgaaaatatttagtgaactccatgacagttgctaaagcagcacacaagtagactacaaatgcatgctgggcccaGCATCTACTGAGCGCAACTTGGAGTGTTATTGAAGCAGGCGAGAAGGCAGATGCTCCAGATTTCGGGAATCTCGCTCCTTGCTCCGCTCAGATACTCCGTCTAGAGAAGCAGAGCCATTGTGCCACTAGAGGGCGGTCTCCCTCCATTTGATCCTGCTTActgatatattttatttaaccaggaagggctcattgagatttgaaatatatagtaaaggcataaatgtagctgatactagctgATTGACAGAAAGGAGGGCCCATAAGTGTCTTTCTATTCAACTTGTTTCTACCAAAAACAAAGACACAAGTCCAAATAGCCAAAAGCCACTTTATTTATGAAACAACCTTAAAAGTGACTAGACCAGGAGTATGAAGAAGTGGTACAACCCAGTAACTGGCGGTACAACTCAGTAACTGGCGGTACAACTCAGTAACTGGCGGTACAACTCAGTAACTGGCGGTACAACTCAGTAACTGGCGGTATGCTGTCTAGTCTCTCAAAGTGGAATGTATTCTAGCAGTGTTGCTCAACTCCGTCACAGGTCCCCCTAGGGCAgggggtactcaactcttaccctacgaggtccagagcctgtTGGTTTCCTGTTCTACCTGAATTagttgcacccacctggtgtcccaggtctaaaatcagtccctgattagagggaaacAATGAAAACTTGCAGTAGAAccggcttcgaggtccagagttgagtttgaggacCCTAAGGGTTGCACAATTGTTAACATTAGTCCAGCACTACAGTAACACAACTGCTGCAACGATCAACAAGCTCTTGAGTAGTTGCGTcaagtgtgttagtgctgggctataACAAATATGTGCAACAGGGGGGCGAGGGCATGAGACTACACTCCCAGAGAGTTGAGTAACACTATTAGAACTGGGCAATGTAACACTACCATAGACACCTATAGGTTACGCTCAGTAACTACTGAATCTTTAGGGGGATTCTTCCTCTGCTCATCCTGCTGGCAACACCAGGGTCATTGTGGGTTCACCTCAGCCCACATATTACATCAGTCATTTGGGATGAGACTAGAAAGTGTCCAATGACCACATTTAGCATAATTCCAACCAATAAAACAGCATGTTTTCACTCAAAGTGTTGGTCTGACACCTTTCAGTGTGTAAATACCTGTTTTTGTCCTCCGATTCTCTTGTCTAACACTTCAGATACCTGTGGACTGAAGTAATTAAAATGTTGCAGATTGAAATAC
>TU1283372
AGTGACTAGACCAGGAGTATGAAGAAGTGGTACAACCCAGTAACTGGCGGTACAACTCAGTAACTGGCGGTACAACTCAGTAACTGGCGGTACAACTCAGTAACTGGCGGTATGCTGTCTAGTCTCTCAAAGTGGAATGTATTCTAGCAGTGTTGCTCAACTCCGTCACAGGTCCCCCTAGGGCAgggggtactcaactcttaccctacgaggtccagagcctgtTGGTTTCCTGTTCTACCTGAATTagttgcacccacctggtgtcccaggtctaaaatcagtccctgattagagggaaacAATGAAAACTTGCAGTAGAAccggcttcgaggtccagagttgagtttgaggacCCTAAGGGTTGCACAATTGTTAACATTAGTCCAGCACTACAGTAACACAACTGCTGCAACGATCAACAAGCTCTTGAGTAGTTGCGTcaagtgtgttagtgctgggctataACAAATATGTGCAACAGGGGGGCGAGGGCATGAGACTACACTCCCAGAGAGTTGAGTAACACTATTAGAACTGGGCAATGTAACACTACCATAGACACCTATAGGTTACGCTCAGTAACTACTGAATCTTTAGGGGGATTCTTCCTCTGCTCATCCTGCTGGCAACACCAGGGTCATTGTGGGTTCACCTCAGCCCACATATTACATCAGTCATTTGGGATGAGACTAGAAAGTGTCCAATGACCACATTTAGCATAATTCCAACCAATAAAACAGCATGTTTTCACTCAAAGTGTTGGTCTGACACCTTTCAGTGTGTAAATACCTGTTTTTGTCCTCCGATTCTCTTGTCTAACACTTCAGATACCTGTGGACTGAAGTAATTAAAATGTTGCAGATTGAAATACATGGTATAGAATGAACGCTGTTTCGATCTCCACAGAAGAGAATCACGTTTTCTCTGACACATTCTATTTCAACCTCTTGGGGAAAAGTCCCTGGCTTCAGCTATTAAGAATGTAAAGCTAGAGATATTAGCAAATTACACATTACTCATTTGCAAAGGCTGATTGAGTTTTCAGATCATTCAGCTCAAATTCCTGACCACTAAACCACCATGCACTAAGGAGTATGCTAGCATGGACATTGGAACACATCCAGAATTTGTATCTGAAATAATACCACACGACGGACATCAAAATGGAATCTGGCGATCAGAAGTCACAATAGACATGTTCATGTGCACAACTTTACCTTTAATGGACCTCAAGCTAGGACACtgaacagctagcctaaataaTTGGACATGATCCTATAGAAATGGCAACAGTATAAGGCTGTGTTCacacaggcagcctaattctgataTTTTCCTCACTaactggtcttttgaccaatcagatcagctcttttgccaaaaaaaaaatcccaattgAGCTGCCCATGTAAACGCTGCCTAATGACACAATAGTAAGTTGTGGCCTTCGACTCTGtgattggattttttttaaatacagaaaGTGAGAGTGAGGCTAGTGAGGACCAAAATACCTTCTCTATTACAGCCCTGCTGAATCGTTTAAAAAAACAATAACAGAGATAGCCACTTGTGTAAATACTGAAGAGAAAACTACCTTGGAATGCAAGAAAAGCTAGCCTACACTGGCTTCTTGCAATGCAGAACACGTTGGCAAAGACCAAAAATCCATTTTTCCCCCTTAGGGTGAAAAAATAAACAAGATGATCATTTGGAACGTGTAGctattaattaatcaattaattaCTCTTCAGATATTTACCACTAGGGGCAGTAAAGTGACGTTCATATTTAAACCAACCGAAGATGGCGGCTTTAAACCCAGTCTATAAATCCCCTCTTCAACGCTACAACTTCTAGTTTCTTGTTACAATTGTCAGAAAACAACGTGCATAAACTGAAGTCACAATTCTAATGGAGCAGCCAATGAGAAGCAACAGGAAGTGAAGTTTCCGTTACTGCGGTAACGACACTAATGACAGAAAGTGGAACTTGATGCGTTCACCATTCCAGATCCCCTGTCAATACGAGAGGTAACGTCTCCCATGTGGTAAAGGAACTGCAGTGTGTTGGGGGGTTATGGGCTATGTGCAGTGTGGTGTTATAGAATGGTGCAACGTCTCTGAGTGCTTTTCTTGCTCTTCTTGTTGCTGCGGTTGGTTTCCTTATACCTCCTGATCTCTCTGACTAGAGAGTAGAACGCCTCCTCCACGCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939254.1 False 3022 mRNA 0.46 7 93708982 93716090
TU1283372 True 2219 lncRNA 0.43 3 93715197 93717463

Neighbor

gene id symbol gene type direction distance location
LOC110534257 dpod1 coding upstream 106843 93544837 ~ 93602139 (+)
aspdh LOC106606414 coding upstream 195764 93503292 ~ 93513218 (+)
LOC110487438 LOC106606384 coding upstream 211967 93490576 ~ 93497015 (+)
LOC110487416 LOC106606345 coding upstream 236394 93433224 ~ 93472588 (+)
LOC110487420 LOC106606345 coding upstream 288574 93403043 ~ 93420408 (+)
LOC118937785 LOC106601943 coding downstream 119925 93836015 ~ 93867992 (+)
LOC118937789 NA coding downstream 190945 93907035 ~ 93922982 (+)
LOC110514006 LOC106603827 coding downstream 207221 93923311 ~ 93934388 (+)
LOC118937788 NA coding downstream 263588 93979678 ~ 93990780 (+)
LOC110516968 LOC106593326 coding downstream 275519 93991609 ~ 93995341 (+)
G1128236 NA non-coding upstream 437 93702930 ~ 93708545 (+)
G1128240 NA non-coding upstream 24307 93627373 ~ 93684675 (+)
G1128250 NA non-coding upstream 36616 93663853 ~ 93672366 (+)
G1128251 LOC106592515 non-coding upstream 39815 93667975 ~ 93669167 (+)
G1128234 NA non-coding upstream 92287 93615998 ~ 93616695 (+)
G1128269 NA non-coding downstream 2918 93719008 ~ 93719263 (+)
G1128270 NA non-coding downstream 3388 93719478 ~ 93719824 (+)
G1128273 LOC106606378 non-coding downstream 12927 93729017 ~ 93758211 (+)
G1128278 LOC106606378 non-coding downstream 22439 93738529 ~ 93742542 (+)
G1128280 NA non-coding downstream 28610 93744700 ~ 93745845 (+)
G1128189 NA other upstream 252022 93455845 ~ 93456960 (+)
G1128105 NA other upstream 436722 93271888 ~ 93272260 (+)
LOC110514489 LOC106606301 other upstream 817389 92877528 ~ 92940625 (+)
G1127628 NA other upstream 1046917 92651458 ~ 92662065 (+)
G1128318 NA other downstream 126679 93842769 ~ 93843097 (+)
LOC110485300 LOC106581592 other downstream 349597 94065500 ~ 94116043 (+)
G1129047 NA other downstream 1021679 94737769 ~ 94833934 (+)
G1129576 NA other downstream 1478296 95194386 ~ 95195280 (+)
LOC110516622 LOC105012861 other downstream 1496214 94934381 ~ 95232039 (+)

Expression


Co-expression Network