LOC110514005 (LOC106601187)


Basic Information

Item Value
gene id LOC110514005
gene name LOC106601187
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 93944638 ~ 93973143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939264.1
GCAACGACATCACAATGTAATTCAGCAACAAGTCTATCTGCCTCTAGCAACTTCCCCTGAAAATTAGTTGGCAACACTGTTTCCTGATATGAAATTGAAAGTCTATTTGGAGCCTAACGCATCTACAAAATGGCTGTTGAAACTGTGGCGCACATGTCTCGGCAACATTAGATGTCTGATAAACGTATTGAAAGAAGCCGACTCTGggctCAGTGCTCTAAAAAGAGTCTCTCTGTGGAGAAAGAGGAgggccctgcctctaaaatgagtctctctggggaacaTGACACCAAAGCTAAGAGCCCAATCAAgcaggagagaacagacagctgtgtgtccATGAACAGTGACAGGTCTATGGGACTACCTATAGACTTCAGAAAGGGATGTTTATCTACTGAAAAAAGAAACCAACGGAAGAACgagatgaagatgttcaagagGATTCTTAGTCCAGAACTCCCACAAGGCTTTGAGAGTCATAAACAGGATAAGGACGTGGTGGACGCTGAAGATGAGAAGCAGGAGAGCAGTGCCAGAGACACACTGTATAAAGATGAGCTTGCTGTGATTTCCCAACGTGAACTCAAGTCTAATCTAAAGAAGAAGTTTCAATGTGTATTTGAGGGAATTGCTAAACAaggaaacccaacacttctcaataAGATCTACACAGAGCCCTACATGACAGAGGGTGGAAAAGGAGAggtcaataatgaacatgagctgagacagattgagacaacaaccaggaaacaagcaagacaagagactgcaatcaaatgtaacgacatcttcaaacccttaactggacaagacaaacttatcagaactgtgctgacaaagggagtcgctggcattggaaaaacagtctctgtgcagaagttcattctggactgggctgaaggaaaagcaaatcaggatgtccaatttgtattttcattcccttttcgggagctgaatttgatgaaagagGAAAACCACACTTTGATTGAACTTCTCAATCACttctcaatggaaaccaaagAATCAAGAATCTCCAACTACGACAAGTACAAAGTCCTGTTcatctttgatggtctggatgagtgccGACTGCCCCTAGACTTCAAAAAGAACAAGATGTGTTGTGACGTCACAAagtcaacctcagtggatgttctgctgacaaatctcatcaagggaaatctgcttccctctgctctcctctggataactacccgacctgcagctgccaataagatcccttcagggtgtgttgaccaggtgacagaggtacgagggttcaatgaCCAACAGAAGGAAGAATACTTCAGAAAGCGATTCAGTGATGATGAGGACCTGGCCAGcagaatcatctcacacataaagacatcaaggagcctccacatcatgtgccacattccagtattctgttggatttctgcaacagtccttgaacacatgctgaaacataagagagaagagatgcccaagactctgactgagatgtacaCACACCTTCTGGAGTTCCATACCAAACAGAAGAATGAAAAGTATCTTGGGAAAGAAGAGACAGGTCCACACTGGAATAAAGAGAGCATTCTATCACTGGGAAAACTGGCTTTTCAACAGCTTGTCAAGGGCAATCTGATTTTCTATCAAGAAGACCTGAAAAGGGCTGGCATTGAGGCCAATGAAGCCTCCGTGTACTCAGGATTGTGCACACAGCTCTTTAAAGAGGAATGTGGGCTGTACCAGGACAAGGTGTACTGCTTCGTGcatctgagcattcaggagtttctggctgctgtatatgtgttcttctcattcatcaacaacaatgaTAATCTAATGGCCAAACCGCAATCAACATCCAGGTACTTTTCTGCTCTGTTCGGAGACAAGCCTGAAGTTACTTCCTACAAGAGTGCTGTGGATAAAGCATTACAAAGTGAGACGGGAAACCTGGACcttttcctccgcttccttctgggcCTCTCAATGGAGTCTAATCAGAAGCACTTACGAGGTCTACTGACAACGTCAAGAAGCAGCTCACAGGGCCATGAAAAAACAGTCAAGTACATCAAGGAGAAGATCAGGGAGAATCCCTCTCCAGAGAGGTgcatcaatctgttccactgtctgaatgaactgaatgaccattctctagtggaggagatccaaAGCTACCTGAGATCAGGAAGTGTCTCCAGTGAAGAACTGTCACCtgcacagtggtcagctctggtctTTGTGATGCTGACTTCAGAAAAAGAGCTGGAtgtgtttgacctgaagaaatactccagatcagaggaaggtctGCTGAGGCTGCTGCCAGTGGTCAAAGCCTCCAGAGTTGCTCTgctgtcaggctgtggagTCAAAAAgaaaggctgtgcttctctggtatCAGCTCTTatgtcaaacccctcacacctgagagagctggatcttagtaacaatgacctgaaggattcaggagtgaagctgctctctgctggactggggaatcctcactgtaaactggagactctgaggctgtcaggctgtggagtcacagaggaaggctgtgcttctctgttCTCAGCTCTgaagtcaaacccctcacacctgagagagatggatctgagtaacaatgacctgaaggattcaggagtgaagctgctctctgctggactggggaatccacactgtaaactggagactctgaggctgtcaggctgtcaagtcacagaggaaggctgtgcttctctggtctcagctctgaagTCAAACCCCTcgcacctgagagagctggacctgagctacaatcacccaggagactcaggagtcagactgctctctgctagactggaggatccacactgcagactggagaaactcaaTGTGGAACATGGTGGAGAGTACACAATGAAACCTGGGCttagaaaatATGCCTGtgatctcacactggacccaaacacagtaaacagacacctctctctgtctgaggagaacagaaaggtgacatggaggatagaggagcagccgtatcctgatcacccagagagatttgacTGGAAacaggtgctgtgtagagagggtctgactgggcgctgttactgggaggcagagtggagtgggagaggggcTTACATAGGAGTGACTTATAAAGGAATCAGCAGAAAAGGAAGTGGTAATGACAGTGGGATTGGATGGAATGACAAGTCCTGGAGTCTGTTTTACTCTGTCAAAAGTTTTGTTGCCTGGCACAATGATAATCCCACTACCATAGAcgtcccatcctccagctcccacagagtaggagtgtatctggactggccagccggcactctgtccttctacagaGTCTCCTCTGACTCACTGACCCACCTGTACACATTCTACAccacattcactgagcccctctatccagggtttcaTGTTTGGTTTGATGCcgcctcagtgtccctgtgtcagGTGGTCCCTGTGTCAAACACAACATGATGTTTCACTCTAATCCTGGTCATGTTCAGGTAGACGCACTGGAGCAACAATGTAGAATAGCTCTCTAGTGTGTAAACATATGATTGTAAATATTCATGAATACACACCATTGAAGTCATTCACTAATATAATGAATCACCACACTGTGTTGTAAAAACTTTTCATTTAGAAATCACTGATCTTGTTATTGGGCTTCTTGGTATTTGTAAATGTTGTTGTCGGTAGAATGTTTGTCTAATTCTTTACACAATAATCTTGCTTCTGCATAAACTCAATTCCACTGAATGAAATGTACATGTGACAGATTTGACGAATTAAGGTTAGCAGATGAAAGAACAGCAGTTCTAAATGTTTTGTGTTTAATAAGACAATATGACATTTAAATaagtaacacacacaccagtttgAGCCAGTTTTTTCCTGTAAATAATAACCATGTTAAACTATAtgaacacagatttttttttacatgttcagTGTTGGAGTGATCGTTTACATTGGACCACATGACCACAATAATGTCACCTGTAGTTGTTTTAAGACGTGTATCATACACTGAACATTTAAATAATATTATTTAAAATGGTCAATACCTTTATGAAGGTATTAAAATACGTATCATATGCCTTGTAAAGTGTCACAACGCAATTTCTGTGAAAAAAATCATGAGTATttaatgtctgtctctctctgtctctaatcccagttgtcagtaaagaaaactgTCCAGACGGGATACATTTTGAGATGACAGAGCAGGATATCTTATAAACTCTAAACTGGAGAGGACAGTA

Function

NR:

description
NLR family CARD domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939264.1 True 4268 mRNA 0.44 10 93944638 93973143

Neighbor

gene id symbol gene type direction distance location
LOC118937783 LOC105029051 coding downstream 105011 93803068 ~ 93839627 (-)
LOC118937784 LOC105029052 coding downstream 149228 93729019 ~ 93795410 (-)
p-ras LOC101485266 coding downstream 219324 93715163 ~ 93725341 (-)
LOC110487422 LOC106606377 coding downstream 261501 93668282 ~ 93683137 (-)
LOC110487463 LOC106606238 coding downstream 283949 93627526 ~ 93660689 (-)
LOC110507112 LOC106596372 coding upstream 161986 94135129 ~ 94138662 (-)
LOC110487111 LOC106606373 coding upstream 206819 94179962 ~ 94190977 (-)
LOC118937791 NA coding upstream 212332 94185475 ~ 94188149 (-)
LOC118937795 LOC106601473 coding upstream 376599 94349742 ~ 94357254 (-)
LOC110513422 LOC106606297 coding upstream 387196 94360207 ~ 94369276 (-)
G1128531 NA non-coding downstream 30629 93879334 ~ 93914009 (-)
G1128688 NA non-coding downstream 43999 93899090 ~ 93900639 (-)
G1128675 NA non-coding downstream 72870 93867468 ~ 93871768 (-)
G1128659 NA non-coding downstream 100393 93844020 ~ 93844245 (-)
G1128655 NA non-coding downstream 109552 93834052 ~ 93835086 (-)
G1128730 NA non-coding upstream 32730 94005873 ~ 94006292 (-)
G1128739 NA non-coding upstream 49185 94022328 ~ 94022652 (-)
G1128745 NA non-coding upstream 63751 94036894 ~ 94112181 (-)
G1128746 NA non-coding upstream 127129 94100272 ~ 94102135 (-)
G1128776 NA non-coding upstream 143777 94116920 ~ 94117156 (-)
G1128616 NA other downstream 237002 93702995 ~ 93707636 (-)
G1128609 NA other downstream 254318 93689685 ~ 93690320 (-)
G1128567 LOC106606382 other downstream 366650 93574065 ~ 93577988 (-)
LOC110487457 LOC106606216 other downstream 552461 93381051 ~ 93392268 (-)
G1128731 LOC106595797 other upstream 33435 94006578 ~ 94116184 (-)
G1128814 NA other upstream 277858 94251001 ~ 94252388 (-)
G1128822 LOC106606284 other upstream 301419 94274562 ~ 94275182 (-)
LOC110511881 LOC106606292 other upstream 478472 94450540 ~ 94464106 (-)

Expression


Co-expression Network