LOC110515058 (LOC106603753)


Basic Information

Item Value
gene id LOC110515058
gene name LOC106603753
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 94023721 ~ 94036915 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939556.1
AGCAAATGAAAGGAACTTTCGACGACCAAATGATCATTCCAGACTCTGCTTCTGTTGAGAGAGATTAAAGgggtCAGTGCTCTAAAATGAGCGTCTCTGCGGAACATGACACCACAGATAAGAGcCCAATCAAGCAGGAGGGACCAGCCTCCACTGTACCCAGCTGTGTGTCTATGAAGAGTGACCGGTCTATGGAACCTCCTATATATTTTAGACAGGGAGACATTTCTACTGAACAAAGAAACCAACAGGAGAGATCAGAGTCAGAGATTCTCAGTGGTCAGTCTTCACTAAGTCATCAAACAGACCTGACCTCCATATTCAGTTTGCTTGAAGAGAATATTATGACATTTGTGAAGAACGAGCTGAAGATGTTCAAGAGGATTCTTAATCCAGAACTCCCACAAGGCTTTGAGAGTCAGAAGCAGGATGAGGAAGTTGTGGATGCTGACGATGAGAAGCAGGAGAGCagtgccagagagggggctcTGAAGATCGCACTGCACGTCCTGAGGAAAATgaaccagaaggagcttgctgacacactggagaaaaATGAGCTTGCTATGATTTGCCAATGTGAACTCAAATCTCATCTAAAGAAGAAGTTTCAATGTGTATTTGAGGGGATCGCTAAACAaggaaacccaacacttctcaacAAGgtctacacagagctctacatcacagagggtggaacaggagaggtcaataatgaacatgagctgagacagattgagacaacaaccaggaaacaagcaagaccagagactgcaatcaaatgtaacgacatcttcaaacccttaactggacaagacaaacttatcagaactgtgctgacaaagggagttgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggctgaaggaaaagcaaatcagGATGTTCAATTTGTATTTTCATTCCCTTTTCGGGAGCTGAATTTAATGAAAGGGGAAAACCACACTTTGATTGAACTTCTCAATCACttctcaatggaaaccaaagAATCAAGAATCTCCAACTACAACAAGTAcaaagttctgttcatctttgatggtctggatgagtgccgcctgcccctagacttccagaagaacaagatATGttgtgatgtcacaatgtcaacctcagtggatgttctgctgacaaacctcatcaagggaaatctgcttcccgctgctctcctctggataactacccgacctgcagcagccaataagatcccttcaggttgtgttgaccaggtgacagaggtacgagggttcaatgacccacagaaggaggagtacttcaggaagagattcagtgatgatgacctggccagcagaatcatctcacacataaagacatcaaggagcctccacatcatgtgccacattccagtcttctgttggatttcTGCAATAGTCCTTGAAgacatgctgaaacataagagagaagagatgcccaagactctgactgagatgtacaCACACCTTGTGGTGTTTTATACCAGACAGAAGAATGAAAAGTATCTTGGGAAAGAAGAGACAGGTCCAGATTTGAATAAAGAGGGCATTCTGTCACTGGGAAAACTGGCTTTTCAACAGCTTGTCAAGGgcaatctgattttctatgaaGAAGACCTGAAAGAGGCTGGAATCGATATCAATGAAGCCTCAGTGTACTCAGGATTGTGCACACAGCTCTTTAAAGAGGAATGTGGGCTGTACCAGGACAAGGTGTACTGCTTCGTGCATCTAagcattcaggagtttctggctgctgtatatgtgctcctctcattcatcaacaacaatgagAATCTAATGGCCAAACTGCATTCAACGAGTATTAACTTTTCTTCGCTATTCAGAGTCCAGCTTGAAGTTGCTTTCTACAAGAGTGCTGTGGATAAAGCCTTACAAAGTGAGAGGGGAAACCTGGACcttttcctccgcttccttctgggcctctcactggagtccaatcagaagcACTTACGAGGTCTACCAACAGAGACAAGAAGTAGCTCACAGAGCCATGAAGAAACAGTCAAGTATATCAAGGAGAAGATCAGGGAGAACCCCTCTCCAGAGATGTgcatcaatctgttccactgtctgaatgaactgaatgaccattctctagtggaggagatTCAAAGCTACCTGAGCTCAGGAAGTCTCTCTAGAGCCAACCTGTCACAtgcacagtggtcagctctggtctttgtgttgctgacttcagAGAAGGAGGTGGAAgtgtttgacctgaagaaatactccagatcagaggaaggtcttCTGAGGCTGCTGCCAGTGGTCAAATCCTCCATAGCTGCTCTgctgtcaggctgtggagTCAAAGAgaaaggctgtgcttctctggtc

Function

NR:

description
NACHT, LRR and PYD domains-containing protein 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939556.1 True 2393 mRNA 0.45 7 94023721 94036915

Neighbor

gene id symbol gene type direction distance location
LOC110519288 NA coding upstream 16485 94005245 ~ 94007236 (+)
LOC110516968 LOC106593326 coding upstream 28380 93991609 ~ 93995341 (+)
LOC118937788 NA coding upstream 32941 93979678 ~ 93990780 (+)
LOC110514006 LOC106603827 coding upstream 89333 93923311 ~ 93934388 (+)
LOC118937789 NA coding upstream 100739 93907035 ~ 93922982 (+)
LOC110485300 LOC106581592 coding downstream 28585 94065500 ~ 94116043 (+)
LOC118937790 LOC106592986 coding downstream 87437 94124352 ~ 94130915 (+)
LOC118937792 LOC106601968 coding downstream 167621 94204536 ~ 94282403 (+)
LOC110487474 LOC106606297 coding downstream 246965 94283880 ~ 94327815 (+)
LOC110487157 LOC106606292 coding downstream 255519 94292434 ~ 94301428 (+)
G1128360 NA non-coding upstream 102273 93916522 ~ 93921448 (+)
G1128357 NA non-coding upstream 117737 93905386 ~ 93905984 (+)
G1128355 NA non-coding upstream 122945 93899675 ~ 93900776 (+)
G1128310 NA non-coding upstream 188238 93834127 ~ 93835483 (+)
G1128304 NA non-coding upstream 201210 93821656 ~ 93822511 (+)
G1128407 NA non-coding downstream 68148 94105063 ~ 94107845 (+)
G1128329 NA non-coding downstream 84820 94121735 ~ 94122212 (+)
G1128416 NA non-coding downstream 103732 94140647 ~ 94140853 (+)
G1128420 NA non-coding downstream 115732 94152647 ~ 94152866 (+)
G1128318 NA other upstream 180624 93842769 ~ 93843097 (+)
LOC110534257 dpod1 other upstream 421596 93544837 ~ 93602139 (+)
G1128189 NA other upstream 566761 93455845 ~ 93456960 (+)
G1128105 NA other upstream 751461 93271888 ~ 93272260 (+)
LOC110514489 LOC106606301 other upstream 1132128 92877528 ~ 92940625 (+)
G1129047 NA other downstream 700854 94737769 ~ 94833934 (+)
G1129576 NA other downstream 1157471 95194386 ~ 95195280 (+)
LOC110516622 LOC105012861 other downstream 1175389 94934381 ~ 95232039 (+)
G1129591 LOC106601742 other downstream 1215505 95252420 ~ 95253323 (+)

Expression


Co-expression Network