LOC110485300 (LOC106581592)


Basic Information

Item Value
gene id LOC110485300
gene name LOC106581592
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 94065500 ~ 94116043 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939240.1
GTTGGATCCATCATAATGCTTCTACATTTTACAGTATGCCATGGCCTCTACTGGCCAAAGGTTAAACTATTGCTATGTTTATGCTATACTATGGGGTTGAGTCACTAGACTTTGACCAAATTTATTGCATCCAAAGATCAACTGTAAAGTACCTAGAACATAGATAGAGAGCCACTTGTCATCCAGAAGGTGCCTCAATGTCTTGACATGTTCTGGTTGTGATTTATTTCAGGCTACAAGGGGTCAGTgatctaaaatgagtctctctggggagagagaggagggggcccCTAcatctaaaatgagtctctctggggaacaTGACAGGAAAGCTATGAGtccaatcaagcaggagagaccagcctTCCCTGTACccagctgtgtgtccatgaagagtgaTCGGTCTATGCGTCAACCTATAGTGTTTAGAGAGGGAGACTTTTCACCTGAACAAAGtccaatcaagcaggagagaccagcctTCCCTGTACccagctgtgtgtccatgaagagtgaTCGGTCTATGCGTCAACCTATAGTGTTTAGAGAGGGAGACTTTTCACCTGAACAAAGAAACCAACAGGATCGATCAGAGATTTTCAGTGGTCAGTCTTCCCAGAGTCATCAAACAGACCTGGCCTCCATATTCAGTttgcttGAAGAGAATATTATGACATTTGTGAAGAATGAGCTGACAATGTTCAAGAGGATTCTTAGTCCAGGAATCCCAGAAGGCTTTGAGAGTCAGAAGCAGGATAAGGAAGTGGTGGACGCTGAAGATGAGAAGCAGGAGAGCagtgccagagagggggctcTGAAGATCACATTGCACATCCTGAGGAAAATgaaccagaaggagcttgctgacacactggagaaaaATGAGCTTGCTGTGATATACAAACGTGAACTCAAATCTAATCTAAAGAAGAAGTTTCAATGTGTATTTGAGGGTATCGCTAAACAaggaaacccaacacttctcaataagatctacacagagctctacatcacagagggtggaaaaggagaggtcaataatgaacatgagctgagacagattgagacaacaaccaggaaacaAGCAAGACCAGAGACTCCAATCAAATGTAACAACATCTTCAAACCCTTAACTGGACAAGACAAACTtatcagaactgtgctgacaaagggagttgctggcattggaaaaacagtctctgtgcagaagttcatcctggactgggctgaaggaaaagcaaatcagGATGTTCAATTTGTATTTTCATTCCCTTTTCGGGAGCTGAATTTAATAAAAGGGAAAAAACACACTTTAATTGAACTTCTCAATCACTTCTCAATGGAAACCAAACAATCAAGGATCTCCAATTATGACAAGTAcaaagttctgttcatctttgatggtttggatgagtgccgactgcccctagacttccagaagaacaagatcTGTTGTGACGTCACAAAGTCAACCTCAGTAGATGTTCTATTGACAAATCTCATCAAGGGAaatctgcttccctctgctctTCTCTGGATAACTACCCGACCTGCAGCAGCCAGCAAGATCCCTTCGGGTtgtgttgaccaggtgacagaggtacgagggttcaatgacccacagaaggaggagtactttagaaagagattcagtgatgaggatctggccagcagaatcatctcgcacataaagacatcaaggagcctccacatcatgtgccacattccAGTATTCTGTTGGATTTCTGCAATAGTCCTTGAACATATGCTGAAAcataagagagaagagatgcccaagactctgactgagatgtacaCACACCTTGTGGTGTTTCAGACCAAACAAAAGAATGGCAAGTATCTTGGGAAAGAAGAGACCGATCCACACTGGAATAAAGAGAGCATTCTGTCACTGGGAAAACTGGCTTTTCAACAGCTTGTGAAGGGAAATATAATGTTCTATGAAGAAGACCTGAAAGAGGCTGGCATTGATGTCAATGAAGCCTCAGTGTACTCAGGATTGTGCACACAGCTCTTTAAAGATGAATGTGGGCTGTACCAGGACAAGGTGTACTGCTTCGTAcatctgagcattcaggagtttctggctgctgtatatgTGTTCCTCTCATTCATTAACAACAATGAAAATCTAATGGTCAAACCTCAATCAATGCCCAGTAACTTTTTTGCGCTGTTCAGAAACAAGCATGACGTTACTTTCTACAAGAGTGCTGTGGATAAAGCATTACAAAATGAGACGGGAAACCTGGACcttttcctccgcttccttctgggcctctcactggagtccaatcagaagcACTTACGAGGTCTACTGACAAAGACAAGAAGCAGCTCACAATGCCATGAAGAAACAGTCAAGTACATCAAGGAGAAGATCAGGGAGAATCCCTCTCCAGAGAGGTGCATCAATCTGTTCCATtgtctgaatgaactgaatgaccattctctagtggaggagatccaaAGCTACCTGAGATCTGGAAGTGTCTCCTGTGAAGAACTCTCACCtgcacagtggtcagctctgatctttgtgttgctgacttcagAAAAGGAGCTGGATGTGTTTGACCTGAAAAAATACTCCAGATCAAAGGAAGGTGTTCTGATGCTACTGCCAGTGGTCAAAGCATCCAAAGCTGCTCTGCTGTCTGGCTGTGGAGTCACAGAGGAAAGCTGTACTTCTCTGGCTTCAGCTCTgaagtcaaacccctcacacctgagagttctggatctgagtaacaatgacctgaaggattcaggagtgaagctgctctctgctggccTGGGGAATCCCCgctgtaaactggagactctgagGTTGTCAGCCTGTCAAGTCACAGAGGAaagctgtgcttctctggtctcagctctgaggtcaaaccaaTCACACCTGAGAAGCCTGaatctgagtaacaatgacctgaaggattcaggagtgaagctgctctctgctggactggggaatccccactgtaaactggaaAGTCTAAGGTTGTCAGcctgtctagtcacagaggaaggctgttcttctctggtctctgctctgagGTCAAatccctcacacctgagagagctggatctgagtagcaatgacctgaaggattcaggagtgaagcttctctctgctggactggggaatcctcactgtaaactggagactctgagGCTGCCAGGCTGTCTAATCACACAGGAAGGGTGttcttctctggtctcagctctgaggtcaaacccctcacacctgagagagctggatctgagtaacaatgacctgaaggattcaggagtgaagctgctctctgctggactggggaatccccattgtaaactggagactctgaggctgtcaggctgtctagtcacagaggaaggctgtggttctctggtctcagctttgaggtcaaacccctcacacctgagagaactggacctgagctacaatcacccaggagactcaggagtcagactgctctctgctggactggaggatccacactgcagactggagaaactcaaTGTGGAACATTGTGGAGAGAAGACAATGAAACCTGGGCttagaaaatATGCCTGTGATCTCACTctggacccaaacacagtaaacagatacctctctctgtctgaggggaacagaaaggtgacatggAGTACAAAGGACCAgccgtatcctgatcacccagagaggtttgaggtctgggaacaggagctgtgtagagagggtctgactgggcgctgttactgggaggcAGAGTGGAGTGGGATAGGGGCTGATATGGGAGTGACATATAACGGAATCATCAGGAGAGGAAGGGGTAATGATAGTAGGCTTGGATGGAATGACAAGTCCTGGAGTCTGGACTGCTCTAACAACAGTTACAGAGCCTGGCACAATAATAATACCACTACCATAgacatcccatcctccagctcccacagagtaggagtgtatctggactggccagccggcactctgtccttctacagagtctcctctgacacactgacacacctgtacacattccacaccacattcactgagcccctctatccaggttTTTATGTTTGGTATgactcctcagtgtccctgtgtcagGTGGTCCCTGTGTCAAACACAACATGATGTTTCACTCTAATGGTCATGTTCAGTAAGACACACTGGAGCAACAATGTAGAATAGCTCTCTAGTGTGTAAACATATGATTGTAAACATTAATTAACACACACCATTGAAATTGACAGACATTGCCAACTAGAGTCATTCATTAATGTAATTAATCACCACATTGTGTTGTAACACTTGTTTTCATTTAGAAATCATTGATCTTCTTGATATTGGACTTCTTGGTGTTTGGAAATATTGTTGTCTGTAGACTGTTTATTTTTCAAATTCTTGACACAACAATCTTGTTTCTGaataaactacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccacatttcaggcttcaaacgtaaagatataaaactgtatt
>TU1283478
AGGTGCCTCAATGTCTTGACATGTTCTGGTTGTGATTTATTTCAGGCTACAAGGGGTCAGTgatctaaaatgagtctctctggggagagagaggagggggcccCTAcatctaaaatgagtctctctggggaacaTGACAGGAAAGCTATGAGtccaatcaagcaggagagaccagcctTCCCTGTACccagctgtgtgtccatgaagagtgaTCGGTCTATGCGTCAACCTATAGTGTTTAGAGAGGGAGACTTTTCACCTGAACAAAGtccaatcaagcaggagagaccagcctTCCCTGTACccagctgtgtgtccatgaagagtgaTCGGTCTATGCGTCAACCTATAGTGTTTAGAGAGGGAGACTTTTCACCTGAACAAAGGTAAGaagaaatcaaaatcaaataaattcaaattgtattggttacaatcgccgaatacaacaggtgtagttgtagaccttacagtgaaatgcttacttatgagcccctaaccaacaatgcagtaaaaataaaaataaaaatgagagTAAAAACTATGCTTAAtaagtagttaaagagcagcagtaaaataacagtagcgagactatatacatgggggtataggaacagagtcaatgtgtgggggcatcGGTTAGTTGagggaatatgtacatgtaggtagagttattaaagtgaaaaTGCACAGATGATAacgacagagagtagcagc
>TU1283489
AGGTGCCTCAATGTCTTGACATGTTCTGGTTGTGATTTATTTCAGGCTACAAGGGGTCAGTgatctaaaatgagtctctctggggagagagaggagggggcccCTAcatctaaaatgagtctctctggggaacaTGACAGGAAAGCTATGAGtccaatcaagcaggagagaccagcctTCCCTGTACccagctgtgtgtccatgaagagtgaTCGGTCTATGCGTCAACCTATAGTGTTTAGAGAGGGAGACTTTTCACCTGAACAAAGtccaatcaagcaggagagaccagcctTCCCTGTACccagctgtgtgtccatgaagagtgaTCGGTCTATGCGTCAACCTATAGTGTTTAGAGAGGGAGACTTTTCACCTGAACAAAGGTAAGaagaaatcaaaatcaaataaattcaaattgtattggttacaatcgccgaatacaacaggtgtagttgtagaccttacagtgaaatgcttacttatgagcccctaaccaacaatgcagtaaaaataaaaataaaaatgagagTAAAAACTATGCTTAAtaagtagttaaagagcagcagtaaaataacagtagcgagactatatacatgggggtataggaacagagtcaatgtgtgggggcatcGGTTAGTTGagggaatatgtacatgtaggtagagttattaaagtgaaaaTGCACAGATGATAacgacagagagtagcagcagtgaaaaatgggggggggggcaatgcaaaccgtctgggtagacatttgattagatgttcagtagtcttatggcttaggggtagaagctgttaagaagcctcttgtacctagacttggtgctccggtaccagtagcagagaaaacagtctatgactagggtggctgaagtccttgacaatttttagggccttcctctgacaccatctggtatagaggtcctggatggcaggaagcttggatccagtgatgtactgggccattcgcacaaccctctgtagtgccttgcggtcggaggcccgaacagttgccacaccaggcagtgatgctaccagccaggatactctcgatggtgcagctgtagaaacttttg

Function

NR:

description
uncharacterized protein LOC110515953, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939240.1 False 4535 mRNA 0.45 14 94065500 94116043
TU1283478 False 714 TUCP 0.42 4 94065687 94083799
TU1283489 True 1085 TUCP 0.45 4 94065687 94084170

Neighbor

gene id symbol gene type direction distance location
LOC110515058 LOC106603753 coding upstream 28585 94023721 ~ 94036915 (+)
LOC110519288 NA coding upstream 58264 94005245 ~ 94007236 (+)
LOC110516968 LOC106593326 coding upstream 70159 93991609 ~ 93995341 (+)
LOC118937788 NA coding upstream 74720 93979678 ~ 93990780 (+)
LOC110514006 LOC106603827 coding upstream 131112 93923311 ~ 93934388 (+)
LOC118937790 LOC106592986 coding downstream 8309 94124352 ~ 94130915 (+)
LOC118937792 LOC106601968 coding downstream 88493 94204536 ~ 94282403 (+)
LOC110487474 LOC106606297 coding downstream 167837 94283880 ~ 94327815 (+)
LOC110487157 LOC106606292 coding downstream 176391 94292434 ~ 94301428 (+)
LOC110516947 LOC106606288 coding downstream 214898 94330941 ~ 94339981 (+)
G1128360 NA non-coding upstream 144052 93916522 ~ 93921448 (+)
G1128357 NA non-coding upstream 159516 93905386 ~ 93905984 (+)
G1128355 NA non-coding upstream 164724 93899675 ~ 93900776 (+)
G1128310 NA non-coding upstream 230017 93834127 ~ 93835483 (+)
G1128304 NA non-coding upstream 242989 93821656 ~ 93822511 (+)
G1128329 NA non-coding downstream 5692 94121735 ~ 94122212 (+)
G1128416 NA non-coding downstream 24604 94140647 ~ 94140853 (+)
G1128420 NA non-coding downstream 36604 94152647 ~ 94152866 (+)
G1128431 NA non-coding downstream 69518 94185561 ~ 94188073 (+)
G1128318 NA other upstream 222403 93842769 ~ 93843097 (+)
LOC110534257 dpod1 other upstream 463375 93544837 ~ 93602139 (+)
G1128189 NA other upstream 608540 93455845 ~ 93456960 (+)
G1128105 NA other upstream 793240 93271888 ~ 93272260 (+)
LOC110514489 LOC106606301 other upstream 1173907 92877528 ~ 92940625 (+)
G1129047 NA other downstream 621726 94737769 ~ 94833934 (+)
G1129576 NA other downstream 1078343 95194386 ~ 95195280 (+)
LOC110516622 LOC105012861 other downstream 1096261 94934381 ~ 95232039 (+)
G1129591 LOC106601742 other downstream 1136377 95252420 ~ 95253323 (+)
G1129601 LOC106601741 other downstream 1150475 95266518 ~ 95267056 (+)
G1128407 NA non-coding downstream 20893 94105063 ~ 94107845 (+)

Expression


Co-expression Network