LOC110507112 (LOC106596372)


Basic Information

Item Value
gene id LOC110507112
gene name LOC106596372
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 94135129 ~ 94138662 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021586983.2
CTGACCTGGCTTCCACCAGCTCaactttctccctttctcctcagacagtctcctctcctctcctctccgctagTCTCGTAAACTGACCGGAAGACGGGGAGAACCGCCTCTCACACATTGATTAGCTGAGAGGACAGTGGAAGAATAGTttctgagaggacaggagaatgATATTTTCTGAAAGAACAAGGGAGGAATAGTttctgagaggacaggagaataACATTTTCTGAAAGAACAAGGGAGGAATAGTttctgagaggacaggagaataATAGTttctgagaggacaggagaagaataGTTtctgagaggacagagggagaaccGTTTCCTGGCAGCTAGGAAGATGAGGAGATTGCAGTCCATGAGATGGTTTAGTTTTCCCTGGTTGAGGAGAGAGACCTCACAGACTGAGACCAGCCCACTCATACCAAAGacagacacagatagagagtTGTCAGGAGTCCTTCAGGGGACTGACGAGAGCAGCACAGAAGAACAGGCTCCAGAACCAGGACCAAATGATGGACCAGGGAACCATGTTAGAACCAGGGAGGTAAAACCCAGAGCCCGTAGCAGGCCCTTCTCCCTGAGAGACTGCCTTCTCAAGTACCTCCTGTTCTTCAGCAACCTCCTCTTCACGGTGCTAGGCCTGGTGGTCCTGGCCCTGGGACTGTGGGGCCTCATCAACAAGGAATCCTTTGCTCAGGAGAAAATAGGACAGATCAGCACCGACCCCATGCTGGTGTTTGTGGTGCTGGGTTTGGTGCTGTCTATCCTCTGCCTGTCTGGCTGTGTGGGGGCTCTGAGAGAGAACTGCTGCCTGCTCCAGGTCTTCTCAGCCACCGTGCTGGTCCTGGTAGCAGCCCAGGTCCTAGCGGCCATTGTGGCCTACAGCCTGCAGGGACAGATAGAGGGATACCTGAGGTCAGGTATGCTGGCTGCCATGGTACGTTACCAGGATGACCTGGACCTGAGGTTCATCACAGATGAGATCCAGATAGGACTGCAGTGCTGCGGGGCCGACACCTACAGAGACTGGGAGGTCAACATGTACTATAACTGCTCTGCCCCGGGGGTGCTGTCCTGTGGGGTCCCTGCTACCtgctgtgtggaccctctggagAACGGCACGGTGTGGAACTCCCAGTGTGGAGTAGGATCCCAGCAGCTGGATGAGTTCTCTGCTCAGAGCGTCATCTTCCTGGGGGGCTGTCTGGGGGGCATGTCCCGCTGGATAGAGCAGCACACAGGCCTGATAGGAGCCGTGGGTATCGTCCTACTGGGGGTTCAGATCATCACTCTGTTCATCACCACACGACTGATGGATAACATCCAGTGCAGTAAAGCTACAAGTTAATAAGACCTAGTGGAGTAAAGCTACATGATAACATCTAGTGGAGTAAAGCTACAAGATAATAACATCTAGTGGAGTAAAGCTACAAGTTAATAACATCTAGTGGAGTAAAGCTACAAGATAATAACATCTAGTGGAGTAAAGCTACAAGATAATAACATCTAGTGGAGTAAAGCTACAAGACAATAACATCCAGTGCAGTAAAGCTACATGATAACATCTAGTGGAGTAAAGCTACATGATAACATCTAGTGGAGTAAAGCTACAACATAATAACATCTAGTGGAGTAAAGCTACAAGATAATAACATCTAGTGGAGTAAAGCTACAAGTTAATAACATCTAGTGGAGTAAAGCTACAAGATAATAACATCTAGTGGAGTAAAGCTACAAGTTAATAACATCCAGTGCAGTAAAGCTACAAGATAATAACATCCAGTGCAGTAAAGCTACATGATAACATCTAGTGGAGTAAAGCTACATGATAACATCTAGTGGAGTAAAGCTACAAGATAATAACATCTAGTGGAGTAAAGCTACAAGTTAATAACATCTAGTGGAGTAAAGCTACAAGATAATAACATCTAGTGGAGTAAAGCTACAAGATAATAACATCTAGTGGAGTAAAGCTACAAGACAATAACATCCAGTGCAGTAAAGCTACATGATAACATCTAGTGGAGTAAAGCTACATGATAACATCTAGTGGAGTAAAGCTACAACATAATAACATCTAGTGGAGTAAAGCTACAAGATAATAACATCTAGTGGAGTAAAGCTACAAGTTAATAACATCTAGTGGAGTAAAGCTACAAGATAATAACATCTAGTGGAGTAAAGCTACAAGTTAATAACATCCAGTGCAGTAAAGCTACAAGATAATAACATCCAGTGCAGTAAAGCTACATGATAACATCTAGTGGAGTAAAGCTACATGATAACATCTAGTGGAGTAAAGCTACAAGATAATAACATCTAGTGGAGTAAAGCTACAAGTTAATAACATATAGTGGAGTAAAGCTACAAGATAATAACATCTAGTGGAGTAAAGCTACAAGATAATAACATCTAGTGGAGTAAAGCTACAAGTTAATAACATCTAGTGGAGTAAAGCAACAAGATAATAACATCTAGTGGATTAAAGCTAAAAGATAATCACATATAGTGGAGTAAAGCTACATGATAACATCCATGATGCTAGCTGGACTCTTATTATCACTATGGACAAAAACTGTAACCATGGAaatatattatgattattataCTGTAAATGTATTAGCTATCGTGTTAGTGAAACCCTACAATGTATTGGCTAGTGTGTTAGTGGAACACTACAATGTATTGGCTAGCGCGTGTGTTGTAATAGTGCAATAGAGCAGTGTTCAGTTAGGATTCAGTTAGGATTCAGTTAGGAATTCAGTTAGGATTCAGTTAGGATTCAGTTAGGAATTCAGTTAGAATTCAGTTAGGATTCAG

Function

NR:

description
tetraspanin-10-like

GO: NA

KEGG:

id description
K17351 TSPAN10; tetraspanin-10

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021586983.2 True 2835 mRNA 0.43 3 94135129 94138662
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110514005 LOC106601187 coding downstream 161986 93944638 ~ 93973143 (-)
LOC118937783 LOC105029051 coding downstream 295502 93803068 ~ 93839627 (-)
LOC118937784 LOC105029052 coding downstream 339719 93729019 ~ 93795410 (-)
p-ras LOC101485266 coding downstream 409815 93715163 ~ 93725341 (-)
LOC110487422 LOC106606377 coding downstream 451992 93668282 ~ 93683137 (-)
LOC110487111 LOC106606373 coding upstream 41300 94179962 ~ 94190977 (-)
LOC118937791 NA coding upstream 46813 94185475 ~ 94188149 (-)
LOC118937795 LOC106601473 coding upstream 211080 94349742 ~ 94357254 (-)
LOC110513422 LOC106606297 coding upstream 221677 94360207 ~ 94369276 (-)
LOC110513417 LOC106606297 coding upstream 232176 94370838 ~ 94376967 (-)
G1128759 LOC106606375 non-coding downstream 4215 94129173 ~ 94130914 (-)
G1128764 NA non-coding downstream 9817 94123972 ~ 94125312 (-)
G1128777 NA non-coding downstream 16839 94118051 ~ 94118290 (-)
G1128776 NA non-coding downstream 17973 94116920 ~ 94117156 (-)
G1128745 NA non-coding downstream 22948 94036894 ~ 94112181 (-)
G1128789 NA non-coding upstream 17027 94155689 ~ 94155917 (-)
G1128806 NA non-coding upstream 101348 94240010 ~ 94241908 (-)
G1128821 LOC106606284 non-coding upstream 130156 94268818 ~ 94272567 (-)
G1128760 NA non-coding upstream 138900 94277562 ~ 94282382 (-)
G1129092 LOC106606287 non-coding upstream 146291 94284953 ~ 94285538 (-)
G1128731 LOC106595797 other downstream 18945 94006578 ~ 94116184 (-)
G1128616 NA other downstream 427493 93702995 ~ 93707636 (-)
G1128609 NA other downstream 444809 93689685 ~ 93690320 (-)
G1128567 LOC106606382 other downstream 557141 93574065 ~ 93577988 (-)
G1128814 NA other upstream 112339 94251001 ~ 94252388 (-)
G1128822 LOC106606284 other upstream 135900 94274562 ~ 94275182 (-)
LOC110511881 LOC106606292 other upstream 312953 94450540 ~ 94464106 (-)
G1129544 NA other upstream 953960 95092622 ~ 95093093 (-)

Expression

LOC110507112(LOC106596372) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1.5.
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LOC110507112(LOC106596372) Expression in each Bioproject

Bar chart with 14 bars.
LOC110507112(LOC106596372) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
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Co-expression Network