LOC110487111 (LOC106606373)


Basic Information

Item Value
gene id LOC110487111
gene name LOC106606373
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 94179962 ~ 94190977 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939267.1
gcctctcctctcctcacactccAACCCTGCTCATCACTCAGCTGGACAGTAAGGGCCGTTCACACCACACACTGACAACATGCTGGGGACACTCTGCACTCTCATCACTGCTCTAACATATGTCAGTTGCCAGAAAGCAGTGACACAGACACCTTCAGTACTGACTGTCAGTACAAAGGGGACTGCTACTTTTCACTGTGACATTACCAAAGATGAAAGCAACTATGTAAACTGGTATAAACAGGTTCCAGGAGGAGCTCCTCAGTATGTGTTAAGGTATCACTATGCACTCGACTCTCCTGATGAATATGGTTCTGGTTTCTCCTCTGATCGTTTCACATCTAAAGCCACGTCTGATAAAGATTATCAGTTTATAATCAGTAATGTGGAGGAGACAGACTCAGCAGTGTATTACTGTCAGACATGGGACAAGTCTGTTAAAGTGCACGTATTCGGACAAGGAACCAAGCTCATTGTTACTGACTCTACCCTCCCTCCGCCTGTCTTGACCATCCTCCCTCCGTCCAGCGATGAGTTGAAGTCCAGCAAAGTCACCCTGGTGTGTCTGGCCAGTCAGATGGCCATGGGTTACGCAGATGTCAGCTGGACAGCTGGAGGGAATCCGGTCACCGGCGGCATCGCTACGAGTGGCCCGGTGCCGCAAGCCGACAAGACGTTTCAACTCAGCAGCTGTCTGACCGTTGACACGTCAGAATGGAACCAGGACAAAGTGTTCTCGTGTAAAGTCACCGCGGGATCCAAGTTCGCTGAGAAAGACATCAAGAAGTCTGAATGCAGCACTGAGTAGCCTGAGAACCATTGTAATGTCTATTTGATTTTCTACATCACTTTTCAAGTTATTGTTAATTCATTACAAGTTTCACCTGCATATATGCATTATGTTCCATAAAAGATAAATAGCTAATCATACTGATATCATAGGCTATATGATAAGTAGACTTGTTATATTTGAAATGGGTTGTTTTGCAGATGATTAATAGAGGAATAGCTAGAGCTTTGCTGTATTGTGGATATTCAATAAAGAACATTCTAAA
>XM_036939268.1
ATAGGTGGGTCctgcagcctctcctctcctcacactccAACCCTGCTCATCTCTCAGCTGGACAGTAAGGGCCGTTCACACCACACACTGACGACATGCTGGGGACACTCTGCACTCTCATCACTGCTCTAACATATGTCAGTTGCCAGAAAGCAGTGACACAGACACCTTCAGTACTGACTGTCAGTACAAAGGGGACTGCAGTTTTTCACTGTGACATTACCAAAGATGAAGGAAATTATGTAAACTGGTATAAACAGGTTCCAGGAGGAGCTCCTCAGTATGTGTTAAGGTTTCACCGTACTGACGCCTCCCCTGATGAATATGGATCTGGTTTCTCCTCTGATCGTTTCACATCTAAAGCCACGTCTGATAAGGATTATCAGTTTACAATCAGTAATGTGGTGGAGACAGACTCAGCAGTGTATTACTGTCAGACTCAGAATGACTCTCCTTTTGCGCAAGTATTCGGACAAGGAACCAAGCTCATTGTTACTGACTCTACCCTCCCTCCGCCTGTCTTGACCATCCTCCCTCCGTCCAGCGATGAGTTGAAGTCCAGCAAAGTCACCCTGGTGTGTCTGGCCAGTCAGATGGCCATGGGTTACGCAGATGTCAGCTGGACAGCTGGAGGGAATCCGGTCACCGGCGGCATCGCTACGAGTGGCCCGGTGCCGCAAGCCGACAAGACGTTTCAACTCAGCAGCTGTCTGACCGTTGACACGTCAGAATGGAACCAGGACAAAGTGTTCTCGTGTAAAGTCACCGCGGGATCCAAGTTCGCTGAGAAAGACATCAAGAAGTCTGAATGCAGCACTGAGTAGCCTGAGAACCATTGTAATGTCTATTTGATTTTCTACATCACTTTTCAAGTTATTGTTAATTCATTACAAGTTTCACCTGCATATATGCATTATGTTCCATAAAAGATAAATAGCTAATCATACTGATATCATAGGCTATATGATAAGTAGACTTGTTATATTTGAAATGGGTTGTTTTGCAGATGATTAATAGAGGAATAGCTAGAGCTTTGCTGTATTGTGGATATTCAATAAAGAACATTCTAAA
>TU1284032
agagagagtgaagctctGTCTGAATGTGATGGTTCAGTCcctgtcctctcagtagagagagtgaagctctgtctgaatgggatggttcagttcctgtcctctcagtagagaGTGAGGAGGTTATTGTACGGCTGTGTAAACAAACTGAATCACTGTGGTATTCGGACAAGGAACCAAGCTCATTGTTACTGACTCTACCCTCCCTCCGCCTGTCTTGACCATCCTCCCTCCGTCCAGCGATGAGTTGAAGTCCAGCAAAGTCACCCTGGTGTGTCTGGCCAGTCAGATGGCCATGGGTTACGCAGATGTCAGCTGGACAGCTGGAGGGAATCCGGTCACCGGCGGCATCGCTACGAGTGGCCCGGTGCCGCAAGCCGACAAGACGTTTCAACTCAGCAGCTGTCTGACCGTTGACACGTCAGAATGGAACCAGGACAAAGTGTTCTCGTGTAAAGTCACCGCGGGATCCAAGTTCGCTGAGAAAGACATCAAGAAGTCTGAATGCAGCACTGAGTAGCCTGAGAACCATTGTAATGTCTATTTGATTTTCTACATCACTTTTCAAGTTATTGTTAATTCATTACAAGTTTCACCTGCATATATGCATTATGTTCCATAAAAGATAAATAGCTAATCATACTGATATCATAGGCTATATGATAAGTAGACTTGTTATATTTGAAATGGGTTGTTTTGCAGATGATTAATAGAGGAATAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC106606373

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939267.1 False 1055 mRNA 0.45 4 94179962 94184466
XM_036939268.1 False 1071 mRNA 0.46 4 94179962 94190977
TU1284032 True 718 TUCP 0.46 2 94180008 94181597

Neighbor

gene id symbol gene type direction distance location
LOC110507112 LOC106596372 coding downstream 41300 94135129 ~ 94138662 (-)
LOC110514005 LOC106601187 coding downstream 206819 93944638 ~ 93973143 (-)
LOC118937783 LOC105029051 coding downstream 340335 93803068 ~ 93839627 (-)
LOC118937784 LOC105029052 coding downstream 384552 93729019 ~ 93795410 (-)
p-ras LOC101485266 coding downstream 454648 93715163 ~ 93725341 (-)
LOC118937795 LOC106601473 coding upstream 158765 94349742 ~ 94357254 (-)
LOC110513422 LOC106606297 coding upstream 169362 94360207 ~ 94369276 (-)
LOC110513417 LOC106606297 coding upstream 179861 94370838 ~ 94376967 (-)
LOC118937793 NA coding upstream 187687 94378664 ~ 94387783 (-)
LOC110513423 LOC106606290 coding upstream 200842 94391819 ~ 94401485 (-)
G1128789 NA non-coding downstream 24045 94155689 ~ 94155917 (-)
G1128763 LOC106606375 non-coding downstream 40279 94123475 ~ 94139683 (-)
G1128759 LOC106606375 non-coding downstream 49048 94129173 ~ 94130914 (-)
G1128764 NA non-coding downstream 54650 94123972 ~ 94125312 (-)
G1128777 NA non-coding downstream 61672 94118051 ~ 94118290 (-)
G1128806 NA non-coding upstream 49033 94240010 ~ 94241908 (-)
G1128821 LOC106606284 non-coding upstream 77841 94268818 ~ 94272567 (-)
G1128760 NA non-coding upstream 86585 94277562 ~ 94282382 (-)
G1129092 LOC106606287 non-coding upstream 93976 94284953 ~ 94285538 (-)
G1129143 NA non-coding upstream 156831 94347808 ~ 94355963 (-)
G1128731 LOC106595797 other downstream 63778 94006578 ~ 94116184 (-)
G1128616 NA other downstream 472326 93702995 ~ 93707636 (-)
G1128609 NA other downstream 489642 93689685 ~ 93690320 (-)
G1128567 LOC106606382 other downstream 601974 93574065 ~ 93577988 (-)
G1128814 NA other upstream 60024 94251001 ~ 94252388 (-)
G1128822 LOC106606284 other upstream 83585 94274562 ~ 94275182 (-)
LOC110511881 LOC106606292 other upstream 260638 94450540 ~ 94464106 (-)
G1129544 NA other upstream 901645 95092622 ~ 95093093 (-)
G1129951 NA other upstream 1201224 95392201 ~ 95393967 (-)
LOC118937791 NA coding upstream 3878 94185475 ~ 94188149 (-)

Expression


Co-expression Network