LOC110485287


Basic Information

Item Value
gene id LOC110485287
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 94468279 ~ 94525947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110485287
CTCCATAACACTAACGAAGAAGAAGACCACTTCCTTCACAGCTCAGCTCGGCTCGGTGAAGCGGAATAAGTATACATCCACTGACTACTGTGGAGGTTGCATTGTTGTAAATGCTTCATGGCCCCTGCAGATTTTGGATTAAACATACATCAGGTTTTACTGGTTCCCTGCACGGATAGCGCTGCTGTAATCAGTCTGGTATTTTATAGGCTACACTTACTGGGCCTCAGGCAATTAAAACTATCTGGACTCTTGAAGAGGACGTTGTTCCAACAGACTCGTGTGGAGGTAGACGATAAACAGACATAAGGATTGTTGGTGAATAGGGTGTTGAACGTTTTCTTGACTCTAATAGAACCAGTAAAATCTTATCCAAGATCTTTCTGAAGTAAGATTACTTTAGATTAATCGAGTTGATATTTAAAAGGACGTTTGATTGCTTTGGTCTAGCTGTGACAAACAAAGTAACTGTAGTGTCAACTAGCTACAGATGAACTGTcacgttttttttatttgaagAAACGTTGAAGAAAGAATAGCTTCCACGATGGATCGGGACAGAGCTAGTCCGTCCCCCTCCACCCTGCCGGAGTCCCCTGGTCACAactctcctggtagcgccttacTGCTGGATCTGAAGAGGATTTCTGTGCTGCTGGTCGACTGCAGGAAAACACCAGGgcagagtggaactgtgagagaagGACACGAGGAGGGAGATCTGATTTCATCAAGGGACATACACTGTTGTTCTCTCAGCGGGAGGGGCTTAtcatctggggagcctcaacaacatcctgttgctgacgagacagagaagagtctctccagattaGAACACCCCACGAAACACCAGCAGGGACATACAGGGAAGAAACCTcaccactgctgctctgactgtgggaagagtttcacaaGCCAGAGTGGCTTCATTATTcactgtgatcagtgtgggaagagttttgctgcATCTAACACCTTCAAATCTAATGTAAGAattcatacaggggagaagccttacccctGCCTTGATTGTGGGAAAAGCTTTGTTAGTGCAGGAGCCTTAACTGTACACCAGCgtgtacacacaggagagaaaccttatagctgtgatcagtgtgggaagagcttcaatcatTCAGGCAACCTGACtacacaccagcgaacacacacaggagagaagccttatagttgtgatcagtgtgggaagagctttgctgtaTCAGAAACACTAACTAGACACCAgcgaatacacactggagagaagccttataactgtggtcaatgtggaaagagctttgctgGAGTTTCCTCCCTGACTGCACACCAGCAaactcacactggagagaagccttatagctgtggtcagtgtgggaagagctttgctgcAGCTTCCGCCCTGATtatacaccagcgaacacacacaggagagaaaccttatagctgtgatcagtgtggaaagagcttcAAACATTCAGGCAGCCTGACTACACACaagcgaacacacacaggagagaagccttatagttgtgatcagtgtgggaagagctttgctgtaTCAGATAGACTAACTAGACACCAgcgaatacacactggagagaagccttataactgtggtcagtgtggaaagagctttgctgGAGTTTCCTCCCTGACTGCACACCAGCAAACTCAcactggagaaaagccttacagctgtggtcagtgtgggaagagctttgttATAGTTTCCTCCCTGACTACACACCAGCGAACTCAcactggagaaaagccttacagctgtggtcagtgtgggaagagctttgctgtaGCTTCCACCCTGATTACACACCAGCGAACTCACACTGGagtgaagccttatagctgtgatcagtgtgggaagagctttgctgtaTCAGAAAAACTAACTAGACACCAGcggatacacacaggagagaagccatatagctgtgatcagtgtgggaagagctttgctcaATCAGAAAAACTAACTAGACACCAGcggatacacacaggagagaagccttatagctgtgatcattgtggaaagagctttgctcAATCAGATAACCTGTATTCACACCAGCggatacacactggagagaagccttatagctgttatcagtgtgggaagagctttgctctAGCTTCCACCCTGACTACAcaccacagaacacacactggagagaagccgtaTAGCTgttatcagtgtgggaagagctttgctctAGCTTCCCACCTGACTGCacaccacagaacacacacaggagtgaAGCCTTATAGTTGTGATCAGTGTGGAAGGGGCTTTTCTCAATCAGTAACCTGGAAtatacaccagcgaacacacacaggagagaagccttatagctgtgttcagtgtggaaagagctttgctgTATTTTCCTCCCTGTCtacacaccagcgaacacacactggagagaagccttatagctgtgatcagtgtgggaagagctttgctgcAGGTTCCACCCTGACTagacaccagcgaacacacacaggagagaaatcttattaGCTGTGATCATTGTGGAAAGAGCTTTAATCAGTCAGGAGCCCTGAAAtcacacaagcaaacacacactggTGAGaaagaagccttatagctgtgatcagtgtgagaAGCGTTTCAGTCAGTTATGGACCCTTTATTCACACCAGTGAAGCTCTGTTTATTTTGGGCCAATGAGAAAAAAACAGAAAGCACAAACTTGCTGTAATTAGATAACCTCAATTCACACCAgcgaatacacactggagagaagccttatagctgtgttTCATCTCCCTTCCTTCTGGCACCGGTTCCAGATCCCTAAATAaaaggatcaaatcaaatgtatttctatagcccttcttacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggatCAGTAGAAAACATCTAGTGAACAGTCATATCCATCTCCCATTCTTAAACAGTTGCCTCAGTCTGATCACCATGGTAACCTCTGTGCAGCATAATATGCagctctgatctaggatcaggtctcccctgTGTCTTTGTAATATCACACATTGATCTAAATGGATAAATGTTATCATAGGAAATGTTATAgggaacttgtgtgtgtgtgtgtggggggggggttgataaTTTTGTATCTTCTTTCATGTACTCATGATAATACTATTATTATTAAATGTCATTATGTAGAATAATATTTCAACAATAGGTGTATATTCATGTATTCAATTGATCAATACATTCAATCCAATTATCTTCTAAACAAGAAGTTATCACTTAAATGGTGTATTTTATATATCTAAATTGATTAAAATGATCCTAAATCTAATCCATAATATATTGGATAATTATTTCCATGAGTTCAAGACAAGATCTATGTATACTGTGTCTTGTAACAACGGTTAATGTAATAACTTTTAGATTTATAACGTAATAAAGCTGGTAAATGTAATATCTTGTTGGTTAATATGATAAAATGTTGTCTAAGTTATTGGTATCAGGTaacaattttttttaatgaataacGTAATAACTTAAACCGATCATGTAATAACACCTAAACCAATGTGTTACTTCACCAATGTTAATGCACATACCACCCTCCACCAAtaacaaacccacacacacaaa
>TU1284127
tagcccttcttacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggatCAGTAGAAAACATCTAGTGAACAGTCATATCCATCTCCCATTCTTAAACAGTTGCCTCAGTCTGATCACCATGGTAACCTCTGTGCAGCATAATATGCagctctgatctaggatcaggtctcccctgTGTCTTTGTAATATCACACATTGATCTAAATGGATAAATGTTATCATAGGAAATGTTATAgggaacttgtgtgtgtgtgtggggggggatgttgatAATTGTATCTTCTTTCATGTACTCATGATAATACTATTATTATTAAATGTCATTATGTAGAATAATATTTCAACAATAGGTGTATATTCATGTATTCAATTAATCAATACATTCAATCCAATTATCTTCTAAACAAGAAGTTATCACTTAAATGGTGTATTTTATAAATCTATATTGATTAAATTGATCCTAAATCTAATCCATAATATATTGGATAATTATTTCCATGAGTTCAAGGCAAGATCTATGTAATAACTTTTAGATTTATAATGTAATAAAGCCGGTAAATGTAACATCTTGTTGGTTAATATGATAAAATGTTGTCTAATAACCTTTTCCACTTAATGTAATAAGTTATTGGTATCAGGTTACAACTTTTTTTAATGAATAACGTAATAACTTAATCCGATCATGTAATAACACCTAAACCAATGTTTAATGTGTTACTTCACCAATGTTAATGCACATACCACCCTCCACGAAtaacaaacccacacacacaaacctatgcCCTTGTACTCgtacacaaacaagcacacagtTATAGACACATACATTGATTTAATCTTTTTAAATGAACAATTCATCTGTAGTTCTTATAGTCAATGAGACAGGGGGCTCGGTCGGGCAAGAGAAAGGAGGATTGGGAATCTGCAAATAACAATAAGCTGAACTCCGTCTGGCAGAAACATCTTTGTATTAGCAACTATTAATGATTAGTTTATATTGTGTTAAAGTTAAGGGAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110485287 False 3675 mRNA 0.33 3 94468279 94507403
TU1284127 True 1051 lncRNA 0.33 2 94506595 94525947

Neighbor

gene id symbol gene type direction distance location
LOC110516947 LOC106606288 coding upstream 128298 94330941 ~ 94339981 (+)
LOC110487474 LOC106606297 coding upstream 140464 94283880 ~ 94327815 (+)
LOC110487157 LOC106606292 coding upstream 166851 94292434 ~ 94301428 (+)
LOC118937792 LOC106601968 coding upstream 190194 94204536 ~ 94282403 (+)
LOC118937790 LOC106592986 coding upstream 337366 94124352 ~ 94130915 (+)
LOC110485292 LOC106606295 coding downstream 827 94508230 ~ 94543100 (+)
LOC118937834 LOC106606288 coding downstream 13080 94519990 ~ 94524727 (+)
LOC118937797 NA coding downstream 179796 94687199 ~ 94687631 (+)
LOC110516622 LOC105012861 coding downstream 426982 94934381 ~ 95232039 (+)
LOC110538753 LOC106606737 coding downstream 771052 95278455 ~ 95286705 (+)
G1128873 NA non-coding upstream 16616 94391333 ~ 94451663 (+)
G1128903 NA non-coding upstream 43274 94424509 ~ 94425005 (+)
G1128870 NA non-coding upstream 110836 94348875 ~ 94357443 (+)
G1128827 LOC106593650 non-coding upstream 155495 94284400 ~ 94312784 (+)
G1128851 NA non-coding downstream 29302 94536705 ~ 94537213 (+)
G1128954 NA non-coding downstream 42282 94549685 ~ 94550049 (+)
G1128955 NA non-coding downstream 46355 94553758 ~ 94554203 (+)
G1128956 NA non-coding downstream 52456 94559859 ~ 94561613 (+)
LOC110485300 LOC106581592 other upstream 384109 94065500 ~ 94116043 (+)
G1128318 NA other upstream 625182 93842769 ~ 93843097 (+)
LOC110534257 dpod1 other upstream 866154 93544837 ~ 93602139 (+)
G1128189 NA other upstream 1011319 93455845 ~ 93456960 (+)
G1128105 NA other upstream 1196019 93271888 ~ 93272260 (+)
G1129047 NA other downstream 230366 94737769 ~ 94833934 (+)
G1129576 NA other downstream 686983 95194386 ~ 95195280 (+)
G1129591 LOC106601742 other downstream 745017 95252420 ~ 95253323 (+)
G1129601 LOC106601741 other downstream 759115 95266518 ~ 95267056 (+)
LOC118937796 NA coding upstream 9360 94493799 ~ 94497235 (+)
LOC118937794 LOC106606292 coding upstream 13986 94482824 ~ 94492609 (+)
LOC110513898 LOC106601743 coding downstream 769214 95295161 ~ 95300530 (+)
LOC110538757 NA coding downstream 784235 95310182 ~ 95312268 (+)
G1128832 NA non-coding upstream 200611 94305261 ~ 94305984 (+)
G1128961 baiap2 non-coding downstream 43530 94569477 ~ 94571548 (+)

Expression


Co-expression Network