LOC118937796


Basic Information

Item Value
gene id LOC118937796
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 94493799 ~ 94497235 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035224.1
TAGATGGCAGCAGGTTCTGAAATTAACACCCGCCAAGCGCCAAATGTGGATAGATTTTTCATTTGGCGAGTAAATCTCAGAATGTTATCCGCCACACTGGTGGGTAAATGTTTGTACCAAAATAGTAATGCAATCAAATCTGGCATGATGGCTCAAGGGAATTATTCATGTTTGCCAGCCTACCACAGACCGTCTCTAGTGCTTCTAGTTTCACGGCACTGTTTACCACACGGTACATCAGCTACTCGACATCGCTCACTTGCCACGGGTCTGCTGCTAGCTACTGTTCAATAAATAGCTATTATGTGGCGATATTTACCTGGAGTGAGCCAACCTTTTGAAACGAAAACCCACTGACGAAAAGGAGGACGAATCACAGGAAGTTTTGTGAGAAATGGTTAAAAGGTTTGGAGATAAAGGTGTTTCAAGAGGCTGGCTACAGTAAGATGCGGAGACTGTGGTGATGAATTGTTCTGTGTGCCACCAGTATGCTGAAGATAAAAGCAGAAACAACTCATTTGTTATCAGAAATAAAATGATGAAGCTGGAGAACATTTGTGACCATGAACACAGCAATGTCACATTGCCTGCGTGCCGAGTGTCCCAGGCTCAATCAGAGCCTCTCCTCTTGACACCCTCTGTGACGGCAATAATGGCAATGTCAGAGCAGACCAGCACGAAGATGAAGATACTGTTTAGGACTGTACATGCCATTGGCAAGAAGATGAGACCACATTCTGACTTTGAGTGGATGTGCGAGTAAGTGAATGTTGTTACTCTTGTAGCTAGACTAGTACTTTTGTAGCTAGATTTTTCAAGTCTATTTATCAGATGTGGTCCAGTATTGTAGGTTATTTCTCAGTTATTGATAAGCTTTGGTTCACCTCAAAATAGTGTATAAATAACCAAATTATAGGCCTACTGATGATGAAATGGATCTCCATGCTTTCCTATGGCTCTGTGACATTCTATTTGAATGTTTGTCTACAGATGCTGTTTACATTTTGAAGCATTGTGACACAATTGACTTTACCAGCCTTATAGTGTTGACCCTTAAGTAAACAAAGGCTAGAAGGCTAATTTAGCACAATAAACTGACAGCTATATTGGATAACATGATTGTATATTGAATTATTATTGAATTAATTTGATGTCTTTATTTTTGTGGTTTGGATGACAAAAAAGGAATCGTTGTGGGCTCAACTAATAGAAATGAGaagcaggccaaagagtttatgCACCATATTGCAGAGGCCTTGAAAaataagggtcaacactgcaaatattgactctttgcatcaacttcatgtaattgtcaataaaagcctgtGACACTTATGacatgcttgtaattatacttcagtatttcatagtaacatctgacaaaaatgtctaaagacactgaagcagcacacTTTGTGGAcatttaatatttgtgtcattctcaaaactttttgccACGACTGTACACCTTCTACCACACCAGTCCACTGAACAGGGCAAACCCGGTTGAACAGCTTCCAGGCTCTTGGGCACACACCGCTGGTGCCCACCAGAATTGGCAGGACCCGATGGGGAAGGACACCTATTGCGTGCACTGGACCTCTTCCTGCGACGGTACCAGGGGCTTGCTTGTCCAGCGTCTGGAACAGATTCAATCTGCTGATGCCCAAAATGTCTGAGGTGTCCAGCAGGCCAAGGCCAGGAAATACTACTGTACTGCGAGGGAGGCTGTTGTTATCCACTTCTGTGGCTTCCTGCATGACACTCTAACACATCCGAGCAACCTGTTCGCCTGTCTGCAGAGGTCCACCATCACCATAGCAACCTGTTCGCCTGTCTGCAGAGGTCCACCATCACCATAGCAACCTGTCCGCCTGTCTGCAGAGGTCCACCATCACCATAGCAACCCGTTCGCCTGTCTGcagaggttggagtcattaattaaaacttcttagggatagctccctttttttcaattttcgactaaatgacatacccaaatctaactgcctgtagcagggatatgcatattcttggtaccatttgaaaggaaacactttgaactttgtggaaatgtgaattgaatgtaggagaatataacacaatagatctgttaGAAGAAaatgcaaagaaaaaaacaacctgtttttttctaccaccatctttgaaatgcaagagaaaggtcccagttttagccatcactctggttgtaattccgatggtgtccacaagatggcagcggTGTGTGCGCACAGTTTCAGacggataacttgaagtatgagcgttctacatgacatttagtgtgaagtcacccaggtacatttgtgcaaatcTAGAAGGAGACGTTTGCATTCataatacatttttctgcaagaatatcgtcaagTCTGTATACTTTAACTTTGAGATAGCTTTTCCattattagtagccatattataaattcaacatttgcaaaacaaccagttttcataactctgaatattcttATAGTTTtagtccaaaaggaaaaggcatgctgtcaCAAAAGGTTAGCACCTACATtttgtgacagacagacacagggtttccggatactcccgtaatctagctagctttgtttgaccccttttggtgcttatttgacaaagatacaattgtaaatgctggtgttcctagctccaacagtgcagtaatatctaacaatacacccgtctaaaagtaaaataaaggaATTATTGACATGTACACACCTGTacaatatctctctcacacacacacacttgggtaATGCAAGTTATtgtgctgttaggggaataacctgtagTGTAAGTGTAACAATCTGctgctgtatttttttgtgttatctgtgatggttttgtttgtcttgttttAGTTTATTAATCATCAGCAGGATACAGGAAGAAAGATGTAGGCAAGATAACTGATGACTAACACGTAAAACATAAGCATGCAATACATACATTATTTTTAGAACATGGAAAGAGTTCTGTCATCGTTATAACCTAACCAAAAGCAGATATCAGCGTTATTGGGTGTAAACAAGCAAAGAACTCAGAATATGAATTTAATGGTGGCAGACGAACTAAGGGGGAGTAACTTTATTTACATATGTGATGTACACAAATACTATGTATGTATAAAAGCAGAGCCAGTGCTAAGAAGGGGCGGCTGTTCCGCGGACCAGCACGGCTCTTAATAACTTGTATTAAAGTCTACATTGAATTCACAAA

Function

NR:

description
zinc finger protein 862-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035224.1 True 3234 mRNA 0.41 2 94493799 94497235

Neighbor

gene id symbol gene type direction distance location
LOC118937794 LOC106606292 coding upstream 1190 94482824 ~ 94492609 (+)
LOC110516947 LOC106606288 coding upstream 153818 94330941 ~ 94339981 (+)
LOC110487474 LOC106606297 coding upstream 165984 94283880 ~ 94327815 (+)
LOC110487157 LOC106606292 coding upstream 192371 94292434 ~ 94301428 (+)
LOC118937792 LOC106601968 coding upstream 215714 94204536 ~ 94282403 (+)
LOC110485292 LOC106606295 coding downstream 10995 94508230 ~ 94543100 (+)
LOC118937834 LOC106606288 coding downstream 23248 94519990 ~ 94524727 (+)
LOC118937797 NA coding downstream 189964 94687199 ~ 94687631 (+)
LOC110516622 LOC105012861 coding downstream 437150 94934381 ~ 95232039 (+)
LOC110538753 LOC106606737 coding downstream 781220 95278455 ~ 95286705 (+)
G1128873 NA non-coding upstream 42136 94391333 ~ 94451663 (+)
G1128903 NA non-coding upstream 68794 94424509 ~ 94425005 (+)
G1128870 NA non-coding upstream 136356 94348875 ~ 94357443 (+)
G1128832 NA non-coding upstream 187815 94305261 ~ 94305984 (+)
G1128944 NA non-coding downstream 3239 94500474 ~ 94521370 (+)
LOC110485287 NA non-coding downstream 9360 94468279 ~ 94525947 (+)
G1128851 NA non-coding downstream 39470 94536705 ~ 94537213 (+)
G1128954 NA non-coding downstream 52450 94549685 ~ 94550049 (+)
LOC110485300 LOC106581592 other upstream 409629 94065500 ~ 94116043 (+)
G1128318 NA other upstream 650702 93842769 ~ 93843097 (+)
LOC110534257 dpod1 other upstream 891674 93544837 ~ 93602139 (+)
G1128189 NA other upstream 1036839 93455845 ~ 93456960 (+)
G1128105 NA other upstream 1221539 93271888 ~ 93272260 (+)
G1129047 NA other downstream 240534 94737769 ~ 94833934 (+)
G1129576 NA other downstream 697151 95194386 ~ 95195280 (+)
G1129591 LOC106601742 other downstream 755185 95252420 ~ 95253323 (+)
G1129601 LOC106601741 other downstream 769283 95266518 ~ 95267056 (+)

Expression


Co-expression Network