LOC118937834 (LOC106606288)


Basic Information

Item Value
gene id LOC118937834
gene name LOC106606288
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 94519990 ~ 94524727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939557.1
ATGGTTCAGGACAGAGCTAGTCCGTCCCCCTCCACCCTGCCGGAGTCCCCTGGTCACAACTCTCCTGGTAGTGCCTTACTGCTGGATCTGAAGAGGGTTTCTGTGCTGCTGGTCGACTGCAGGAAAACACCAGGgcagagtggaactgtgagagaaggacacgaggagggagatggagatctGATTTCATCAAGGGACACCCTTAACCATTGTTCTCTTAGTGGGAGGGGCTTATcgtctggggagcctcaacaacatcctgttgctgacgagacagagaagagtctctccagatcagaacatctcaagaaacaccagcaggGACGTACAGGGAAGAAACCTcaccactgctgctctgactgtgggaagagttttacaaGCCAGAGTGGCTTCATTATTcactgtgatcagtgtgggaagagttttgctgcATCTAACACCTTCAAATCTAATGTAAGAattcatacaggggagaagccttacccctGTCTTGATTGTGGGAAAAGCTTTGTTAGTGCAGGAGCCTTAACTGTACACCAGCgtgtacacacaggagagaaaccttatagctgtgatcagtgtggaaagagcttcAATCAGTCAGGCCACCTGACTACACACCAGCTAATGCACACTGGAGAGAatccttatagctgtgatcagtgtgggaagagctttgctgtaCTTCCCTCCCTGACTATACACCagcgcatacacacaggagagaaaccttatagttgtgatcagtgtggaaagagctttgctgTAGTTTCCTCCCTGATTagacaccaggtaacacacactggagagagaacCTATGTCTGTCTATGTGGGAAGAACTTTGCTCTAGCTTCCACCCTGACTGTAcacaagagaacacacactggagagaagccttatagctgtgatcagtgtggaaagagctttgctgTATCAGAAAAACTAACTAGACACcagcgaatacacacaggagagaagccttatagctgttatcagtgtgggaagagctttgctcaATCAGACAATCTAACTAGACACCAGcggatacacacaggagagaagccttatagctgtgatcattgTGGAAAGAACTTTACTCAGTCCTCAGCCCTGAATTCACACAAGCTAACACACGCTGGTGAGAAAGAAGCCTTATatctgtgatcagtgtgggaagcgTTTCAGTCAGTTATGGACCCTTTATTCACACCagtgaacacacactggagaaggAGCCTTTGGTCTGTCTAGGTGGGAAGAGCTCTGTTTATTTAGGGCCAATGA
>TU1284148
gtcacatacttgtgtttagcagatgttatagcgggtgtagcgaaatgcttgtaacaCACTGACTACTTCGGAGGTTGCATTGCTGTAAATGCTGCATGCTTCGCAGCACGTATAGCTTGTAATTTGGTATTTTTTAGGCTACACTTACTGGGCCTAAGACAATTAAAACTATCTGGACTCCCGAAGAGGACGTTGTTCCAACAGACTCTGGGGTAGAGGTAGACGACAACAGTATTTTTGGTGAATAGGGTGTTGGACGTTTTATTTACTTTAATAGATTCAAATCATATCCAGGATCTTTCTGGAGTAAGATTAGGCTACATCAGACATATATTTGTCAACGTTAGTCGAGTGTTGATATTTAAATTAACGTTTGTTCTGGTCTAGCTTTATCTGAACGCGGTAACAAAGAAAGTAACTAGTGTGGGCTAGCTACAGATTTACTGTCACGTTTTTTATTTGAAGAAACGCTGAAGAAAGAACGGCTTCAACGATGGTTCAGGACAGAGCTAGTCCGTCCCCCTCCACCCTGCCGGAGTCCCCTGGTCACAACTCT

Function

NR:

description
zinc finger protein OZF-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939557.1 False 1284 mRNA 0.48 3 94520483 94524727
TU1284148 True 556 lncRNA 0.42 2 94519990 94523118

Neighbor

gene id symbol gene type direction distance location
LOC110485287 NA coding upstream 13080 94468279 ~ 94525947 (+)
LOC118937796 NA coding upstream 23248 94493799 ~ 94497235 (+)
LOC118937794 LOC106606292 coding upstream 27874 94482824 ~ 94492609 (+)
LOC110516947 LOC106606288 coding upstream 180502 94330941 ~ 94339981 (+)
LOC110487474 LOC106606297 coding upstream 192668 94283880 ~ 94327815 (+)
LOC118937797 NA coding downstream 162472 94687199 ~ 94687631 (+)
LOC110516622 LOC105012861 coding downstream 409658 94934381 ~ 95232039 (+)
LOC110538753 LOC106606737 coding downstream 753728 95278455 ~ 95286705 (+)
LOC110513898 LOC106601743 coding downstream 770434 95295161 ~ 95300530 (+)
LOC110538757 NA coding downstream 785455 95310182 ~ 95312268 (+)
G1128873 NA non-coding upstream 68820 94391333 ~ 94451663 (+)
G1128903 NA non-coding upstream 95478 94424509 ~ 94425005 (+)
G1128870 NA non-coding upstream 163040 94348875 ~ 94357443 (+)
G1128832 NA non-coding upstream 214499 94305261 ~ 94305984 (+)
G1128851 NA non-coding downstream 11978 94536705 ~ 94537213 (+)
G1128954 NA non-coding downstream 24958 94549685 ~ 94550049 (+)
G1128955 NA non-coding downstream 29031 94553758 ~ 94554203 (+)
G1128956 NA non-coding downstream 35132 94559859 ~ 94561613 (+)
G1128961 baiap2 non-coding downstream 44750 94569477 ~ 94571548 (+)
LOC110485300 LOC106581592 other upstream 436313 94065500 ~ 94116043 (+)
G1128318 NA other upstream 677386 93842769 ~ 93843097 (+)
LOC110534257 dpod1 other upstream 918358 93544837 ~ 93602139 (+)
G1128189 NA other upstream 1063523 93455845 ~ 93456960 (+)
G1128105 NA other upstream 1248223 93271888 ~ 93272260 (+)
G1129047 NA other downstream 213042 94737769 ~ 94833934 (+)
G1129576 NA other downstream 669659 95194386 ~ 95195280 (+)
G1129591 LOC106601742 other downstream 727693 95252420 ~ 95253323 (+)
G1129601 LOC106601741 other downstream 741791 95266518 ~ 95267056 (+)

Expression


Co-expression Network