LOC110516622 (LOC105012861)


Basic Information

Item Value
gene id LOC110516622
gene name LOC105012861
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 94934381 ~ 95232039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939326.1
CGCCTGCTGCCCCACGCTCTCCTCGCTCACGGACCAGCTCTCCTCTCCGGTTTACTCATTCACATCGGTGAGCGATAGACTTCTTCCACACAGGACTAGTAGGAGTCGCTGGACTAGGAGGCAGGACCGACTCGCTCGCTCTCACCGGAGGCTGTGTGTGGCTGCCAAGCAACATGTTACCAAAACGGCGACCCCGCTCTGCTGACTTGACGGGGATACCGGGGATGCCGACAGGGACGGTGCTCGGCGGTTCGGCGGGACTGAAGTGGCTCTCCTGTTGGATTCTGATGTCAGCGATGTGTTTCCACCACGTAGCAGCACAAGATGACGTTCCTCCCTACTTTAAGATGGAGCCGGTCCAGACCCAGGTTCATCTGGAGCGTAACAGACTGGTTCTTACCTGTATGGCTGAGGGCAGCTGGCCTCTGGAGTTTAAATGGCTCTACAACGCCACTGAGCTCACGCGCTTCTCTCTGGAGTACAGGTACCTGATCCCGTCTCTGGACCGCTCCCATGCTGGTTTCTACAGATGCATCGTCAGGAACAGAGTAGGAGCCATCATGCAGAGCAGCACTGAAGTACAGGTCGCCTatATGGGTGATTTTGTGGAGGGGGAGCGTTCCCAGACTGTGTCCCAGGGAGAGGCTGCTCTGATCCAGGCTCCACGCATCCACAGCTTCCCACGACCACAGATTACCTGGTTCAGGGACGGACGCAAGATACCCGCCAGCAGCCGCATagCCATCACCCTGGACAACACTCTGGTCATCCTGTCCAGTGTGGCTCCTGATGCTGGACGGTACTACACACAGGCTGTCAACGACAAGAACGGAGAGAACAAAACCAGCCATCCTATCCTACTGACTGTGGAGAacgtgGGGGGGCCTGTGGACCCCATCACCCCCACCATCATCATCCCTCCTAAGAACACCAGTGTGAACGCGGGGAGgaatgatgtcattatggagtgtgTGGCCAATGCTAGacCTCTGATCAAGATGGTTATAACCTGGCGTAAGGATGGTGTAGTGGTCAGTACAGGGATACGTGACTTTGGCCGCAGGCTGACCATCAGCCTCCCAGCGGTCAGTGACAGTGGTTACTATGAATGTGAGGCCACCCTCCGCAGCAGCACTGTGCCTCCGGTCAACGCAGGGGCCTACCTACATGTtctagACCATCCCCAGTTTGTGAAGGAGCCTGTCCAACACATCAGTGCAGAGATGGAGAAGGTGGTGGATATCCCCTGCCAGGCacgaggtgTCCCCCAGCCAGACATAGTGTGGTATAAGGATGCTGTGGTCATCAGTCCAGTGAAGATGCCCAGGTACAGGGTGTTAGTTGGGGGCAGTCTGCAGATCAACGGTCTGTTACCGGACGATACAGGCATGTTCCAGTGCTTCGCCCGCAACCTGGCTGGAGAGATACAGACCAACACCTACCTCGCTGTCACcaGTATTGCCCCCAACATCACGGCAGGTCCAGCTGACAGTGCTGTGATTGACGGCATGTCAGTCATCCTCCACTGTGAGACCAGCGGAGCCCCGCGACCAGCTATCACCTGGCAGAAAGgtGAACGTGTGTTGGCCAGTGGTTCTGTCCAGCTGCCCAGGTTCACCCTGCTGGAGTCAGGCAGTCTACTGGTCTCCCCGTCTCACCTTTCTGATGCTGGGACTTATACCTGCATGGCCAGCAACTCCAGAGGCATAGACGAGGCTGCCGCAGATCTACTGGTGTGGGCACGGACCCGTATCACCAAGCCACCTGCAGACCAGAGTGTCATCAAGGGGACCAAGGCTGTCATGTCTTGTGGGGTGACCCATGACCCCAGTGTGTCTGTCAGGTAAGGATGATGTCATGTCCTGTGGGGTGACCCATGACCCCAGTGTGTCTGTCAGGTAAGGATGATGTCATGTCTTGTGGGGTGACCCATGACCCCAGTGTGTCTGTCAGGTAAGGATGATGTCATGTCCTGTGGGGTGACCCATGACCCCAGTGTGTCTGTCAGGTAAGGATGATGTCATGTCCTGTGGGGTGACCCATGACACTAGTGTGTCTGTCAGTTAATTGGATGCCAAGCTGACACCTGACTCAGCTCCTCAAAGGCT
>TU1284838
GGCACGCCTGCTGCCCCACGCTCTCCTCGCTCACGGACCAGCTCTCCTCTCCGGTTTACTCATTCACATCGGTGAGCGATAGACTTCTTCCACACAGGACTAGTAGGAGTCGCTGGACTAGGAGGCAGGACCGACTCGCTCGCTCTCACCGGAGGCTGTGTGTGGCTGCCAAGCAACATGTTACCAAAACGGCGACCCCGCTCTGCTGACTTGACGGGGATACCGGGGATGCCGACAGGGACGGTGCTCGGCGGTTCGGCGGGACTGAAGTGGCTCTCCTGTTGGATTCTGATGTCAGCGATGTGTTTCCACCACGTAGCAGCACAAGATGACGTTCCTCCCTACTTTAAGATGGAGCCGGTCCAGACCCAGGTTCATCTGGA
>TU1285079
CTGAGCTCACGCGCTTCTCTCTGGAGTACAGGTACCTGATCCCGTCTCTGGACCGCTCCCATGCTGGTTTCTACAGATGCATCGTCAGGAACAGAGTAGGAGCCATCATGCAGAGCAGCACTGAAGTACAGGTCGCCTatATGGGTGATTTTGTGGAGGGGGAGCGTTCCCAGACTGTGTCCCAGGGAGAGGCTGCTCTGATCCAGGCTCCACGCATCCACAGCTTCCCAC
>TU1285100
GAGAACAAAACCAGCCATCCTATCCTACTGACTGTGGAGAacgtgGGGGGGCCTGTGGACCCCATCACCCCCACCATCATCATCCCTCCTAAGAACACCAGTGTGAACGCGGGGAGgaatgatgtcattatggagtgtgTGGCCAATGCTAGacCTCTGATCAAGATGGTTATAACCTGGCGTAAGGATGGTGTAGTGGTCAGTACAGGGATACGTGACTTTGGCCGCAGGCTGACCATCAGCCTCCCAGCGGTCAGTGACAGTGGTTACTATGAATGTGAGGCCACCCTCCGCAGCAGCACTGTGCCTCCGGTCAACGCAGGGGCCTACCTACATGTtctagACCATCCCCAGTTTGTGAAGGAGCCTGTCCAACACATCAGTGCAGAGATGGAGAAGGTGGTGGATATCCCCTGCCAGGCacgaggtgTCCCCCAGCCAGACATAGTGTGGTATAAGGATG

Function

NR:

description
PREDICTED: protein sidekick-2 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939326.1 False 2108 mRNA 0.56 12 94934385 95232039
TU1284838 False 383 lncRNA 0.59 2 94934381 95180919
TU1285079 False 231 lncRNA 0.57 3 95180994 95200883
TU1285100 True 463 TUCP 0.55 5 95212304 95224183

Neighbor

gene id symbol gene type direction distance location
LOC118937797 NA coding upstream 246754 94687199 ~ 94687631 (+)
LOC110485292 LOC106606295 coding upstream 391285 94508230 ~ 94543100 (+)
LOC118937834 LOC106606288 coding upstream 409658 94519990 ~ 94524727 (+)
LOC110485287 NA coding upstream 426982 94468279 ~ 94525947 (+)
LOC118937796 NA coding upstream 437150 94493799 ~ 94497235 (+)
LOC110538753 LOC106606737 coding downstream 46416 95278455 ~ 95286705 (+)
LOC110513898 LOC106601743 coding downstream 63122 95295161 ~ 95300530 (+)
LOC110538757 NA coding downstream 78143 95310182 ~ 95312268 (+)
LOC110486798 LOC105026136 coding downstream 95549 95327588 ~ 95377378 (+)
LOC110538762 NA coding downstream 380895 95612934 ~ 95618161 (+)
G1129366 NA non-coding upstream 37695 94896385 ~ 94896690 (+)
G1129067 NA non-coding upstream 139265 94794781 ~ 94795120 (+)
G1129046 NA non-coding upstream 199786 94733826 ~ 94734599 (+)
G1129044 NA non-coding upstream 205031 94728982 ~ 94729354 (+)
G1129039 NA non-coding upstream 215955 94716664 ~ 94718430 (+)
G1129655 NA non-coding downstream 139687 95371726 ~ 95371941 (+)
G1129721 NA non-coding downstream 159673 95391712 ~ 95394822 (+)
G1129737 NA non-coding downstream 184637 95416676 ~ 95416914 (+)
G1129047 NA other upstream 100451 94737769 ~ 94833934 (+)
LOC110485300 LOC106581592 other upstream 850215 94065500 ~ 94116043 (+)
G1128318 NA other upstream 1091288 93842769 ~ 93843097 (+)
LOC110534257 dpod1 other upstream 1332260 93544837 ~ 93602139 (+)
G1128189 NA other upstream 1477425 93455845 ~ 93456960 (+)
G1129591 LOC106601742 other downstream 20381 95252420 ~ 95253323 (+)
G1129601 LOC106601741 other downstream 34479 95266518 ~ 95267056 (+)
G1129613 LOC106601744 other downstream 68745 95300784 ~ 95309697 (+)
G1129772 NA other downstream 287139 95519178 ~ 95519642 (+)
LOC110538761 LOC106606716 other downstream 397564 95629494 ~ 95815227 (+)
LOC118937794 LOC106606292 coding upstream 441772 94482824 ~ 94492609 (+)
LOC110516622 LOC105012861 other downstream 11421 94934381 ~ 95232039 (+)
G1129455 NA non-coding upstream 79177 95132245 ~ 95133127 (+)
G1129448 NA non-coding upstream 111140 95099195 ~ 95101164 (+)
G1129435 NA non-coding upstream 145277 95066341 ~ 95067027 (+)
G1129433 NA non-coding upstream 148305 95062037 ~ 95063999 (+)
G1129576 NA other upstream 17024 95194386 ~ 95195280 (+)

Expression


Co-expression Network