LOC110486837 (LOC105026133)


Basic Information

Item Value
gene id LOC110486837
gene name LOC105026133
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 95395260 ~ 95621138 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939339.1
ATGGCTGATCATCATCTTTTACATTATAGCGACTCAGCTGCGGTTGGGAACCGTTTCGCCCGCAAAGGTGCTCTGCGGCAGAAAAACGTGCATGAAGTCAAAAATCACAAATTTACTGCCAGGTTTTTCAAGCAACCGACATTCTGCAGTCATTGCACAGACTTCATATGGGGATTTGGGAAACAAGGATTCCAGTGCCAAGTGTGCTGTTTTGTGGTCCACAAAAGGTGCCATGAGTTTGTCACGTTCTCTTGCCCTGGAGCCGACAAAGGCCCCGACACAGATgatCCCAGAAGCAAGCACAAGTTTAAGATCCACTCGTACGGCAGTCCCACGTTCTGCGACCACTGTGGCTCCCTCCTCTATGGACTCATCCACCAGGGGATGAAATGCGACAccTGCGACATGAACGTACACAATCAGTGTGTGATGAACGTGCCAAGCCTGTGTGGGACAGACCACACGGAGCGCAGAGGACGCATCTTCCTCAAGATCGACGTCAGCGGAGACAGGCTACACGTCACAGtggggGAAGCCAGAAACCTGATCCCCATGGACCCTAACGGTCTGTCTGACCCCTACGTGAAGCTCAAGCTCATCCCTGACCCCAAGAACGAGACCAAACAGAAGACCAGGACCATACGCTCCTCACTCAACCCCACCTGGAATGAGTCTTTCAgcttTAAGCTGAAGGTAATGGATAAGGACCGTCGTCTGTCTATAGAGGTGTGGGACTGGGACCGTACCACCAGGAACGACTTCATGGGCTCAATGTCGTTCGGTGTGTCTGAACTCATCAAGTCCCCCGCCTGCGGCTGGTACAAGATGCTGTGCCAGGAGGAAGGGGAGTACTACAACGTTCCCATCCCTGAGATCGACGACGTCAACATGGAGCTCAGGCATAAGTttgagAAAGCCAAGCTGGGCCATGGGAAGAAAGTGATTACGCCAGCGGACCACAGACGGTTCAGCTCGGACCGCACCGTGCCCGGAATGGACCGTGTCCGACTCAGTGACTTCAACTTTCTGGCTCTGCTGGGGAAGGGCAGCTTTGGCAAGGTGATGCTGGCAGAGATGAAGTCCACAGAGGAGCTGTACGCCGTCAAGATCCTGAAGAAGGACGTGGTGATCCAGGATGATGATGTGGAGTGTACCATGGTGGAGAAGAGAGTCCTGGCCCAGAGAGACAAACCACCATTCCTCACTGCACTCCACTCCTGCTTTCAGACTGTGGATCGTCTGTACTTTGTGATGGAGTATATTAACGGAGGGGACCTCATGTACCACATTCAGCGTGTGGGCAAGTTCAAGGAGCCACAGGCAGTGTTCTATGCTGCAGAGATCGCTGTGGGCCTGTTCTTCCTGCACAGAAAGGGTGTTGTATACAGGGACCTCAAATTGGACAACGTGATGCTGGACTCTGAGGGCCACATTAAGATAGCAGACTTTGGCATGTGTAAGGAGAACATGTATGAAGGCATGGTCACACGCACTTTCTGTGGTACCCCCGACTATATCGCCCCAGAGATCATTGCATATCAGCCCTATGGGAAATCAGTGGACTGGTGGGCTTATGGGGTTCTCCTCTACGAGATGCTAGCAGGACAGCCGCCGTTCGAtggagaggatgaagatgagtTGTTCCAGTCCATCATGGAGCACAACGTGTCCTACCCCAAGTCTATGTCTAAGGAAGCTGTCGTCATCTGCAAGGGATTCATGACCAAGCACCCATCAAAGCGTCTGGGCTGTGGTCTGGAGGGCGAGAGGGACATCCGGGAGCAGGCCTTCTTCAGACGTATCGACTGGGACCGCCTCGCCAACAGAGAGATCCAACCGCCATTCAAGCCTAAAacgggcGGCAAAGGAGCAGAAAACTTTGACAAGTTCTTCACACGCACCCAGCCCATGTTGACCCCTCCAGACCAGCTAGTCATCGCCAACATTGACCAGAGCGACTTCGCTGGTTTCTCCTACATCAACCCACAGTTCATCCACCCTTCCCTCCTTCACAGTGTGGTATGAGGGGATAgatcagggagaggaggaagagagagaaagaggttggtgagagagcaagagaaagagagagagggggagaagagagccatgtggactgggactgggacagcAACCCTCCACATTGACCACCAATCCCCTATTGTCCCTTTGTCAAAGAGACTAATATTATCTTCATGTGTTCTCTGGACTTC

Function

NR:

description
PREDICTED: protein kinase C alpha type isoform X2

GO: NA

KEGG:

id description
K02677 PRKCA; classical protein kinase C alpha type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939339.1 True 2213 mRNA 0.53 17 95395260 95621138

Neighbor

gene id symbol gene type direction distance location
LOC118937798 LOC106606721 coding downstream 6779 95380385 ~ 95388481 (-)
LOC110538756 LOC108245165 coding downstream 85497 95300960 ~ 95309763 (-)
LOC118936310 LOC106601672 coding downstream 99152 95287208 ~ 95296108 (-)
LOC110538752 LOC106606738 coding downstream 117166 95269361 ~ 95278094 (-)
LOC110539029 LOC106601741 coding downstream 126772 95254631 ~ 95268488 (-)
LOC110538778 NA coding upstream 374107 95995245 ~ 95996642 (-)
LOC118937923 NA coding upstream 374251 95995389 ~ 95995530 (-)
LOC118937801 NA coding upstream 684730 96209246 ~ 96313547 (-)
LOC118937802 fbxl16 coding upstream 693188 96314326 ~ 96365986 (-)
LOC110516715 LOC103469064 coding upstream 771101 96392239 ~ 96435793 (-)
G1129719 NA non-coding downstream 4974 95389734 ~ 95390286 (-)
G1129717 NA non-coding downstream 5619 95389416 ~ 95389641 (-)
G1129692 NA non-coding downstream 17886 95374265 ~ 95377374 (-)
G1129668 NA non-coding downstream 82998 95310944 ~ 95312262 (-)
G1129547 NA non-coding downstream 292448 95098960 ~ 95102812 (-)
G1130054 NA non-coding upstream 13249 95634387 ~ 95634704 (-)
G1130058 NA non-coding upstream 21967 95643105 ~ 95643307 (-)
G1130059 NA non-coding upstream 22593 95643731 ~ 95644013 (-)
G1130074 NA non-coding upstream 52757 95673895 ~ 95674153 (-)
G1130075 NA non-coding upstream 53698 95674836 ~ 95680048 (-)
G1129951 NA other downstream 1293 95392201 ~ 95393967 (-)
G1129544 NA other downstream 302167 95092622 ~ 95093093 (-)
LOC110511881 LOC106606292 other downstream 937062 94450540 ~ 94464106 (-)
G1128822 LOC106606284 other downstream 1120078 94274562 ~ 94275182 (-)
G1128814 NA other downstream 1142872 94251001 ~ 94252388 (-)
G1130049 NA other upstream 4620 95625758 ~ 95626165 (-)
G1130145 NA other upstream 223969 95845107 ~ 95846283 (-)
G1130893 NA other upstream 1081269 96701694 ~ 96705588 (-)
LOC110518479 LOC106591170 other upstream 1093653 96714290 ~ 96728931 (-)

Expression


Co-expression Network