LOC110538781 (LOC106595186)


Basic Information

Item Value
gene id LOC110538781
gene name LOC106595186
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96072905 ~ 96080552 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035241.1
cttggctgtcgaaacgttgatattacatttttgcatctgagctcttagagtgtgcggctctcttttattttcacgtttctactccgctagccagcacctcgtcttaataggtgtgcgtttctttttcttttagatCGTTATGTTACCCAGTAAACAGCACCCTACCGACAAAAAAAGCTCTTAAACGATGCCGAATGATAATTATTTTCCTGACACTGGTCATAGACCCAGACAAGATTACTTTGAATATAGTCAAAGGGAGCGTGATAAGATCATTATTTCGGAGTCCCTTTTTGACATGCCGGGAGGTAATTCCGACCCCTCGAAAGAACTATTACATTTATCTAAGCGCCAGACGAGAACGCATCTACATATAGTTACTCTTAGTGATTATGTGCGTCGAGGCATTATTCCACGGGGACTCAGGTGGCAAAAAGAACCATCATTGGGACAGCGCACAGATGATTACTGTGAGCGCTGGTGTGCCATCCTGAACAAATGCTCTATTGATTTAATGACATTAATTGTTGACCAGTTGAAGGATTTTATTGAAATGGATAACACGATTAAAGACAAACGCACAGCTCTACAAACAATTGTTAATGATGATGGCATATTCAATGAACTGATGAAAACTAACCAAGCGCTCCAGGACAAGTTGTCTACAGAAATAAAGGAATTTGAAATCAAGAAATTCAACCAAGACAAAAAAGACGAGACCGATGGTAAAGTCTACTTCTGGAGAAACCCTGACAAAAGAggtcctgctccccctctccatGACAGACGCAGGAGGGATGCCGCTTACTTCTATCCACCCTTGTCTGATCAACGCTCCACAACCAGCGCCTCATCGGCTTCCAGTGGTAGTTTTTTATTCAACGAGAGACTGGACGGACGGAAGGGCGGAGGAGGCCGCAGGCACGCGCATCGACGAGATGTCGCACCCGACGGGattgaggtgcaccaatgaccagctctgaaaccagattgcattgcagagaagatGGCCCTGTTGGAGCTCTAGGAGATGGTTTTAACATGGAAGCATCTTCTTCAGGGAGATCTACAGGATGTTTTCAGCCAGGTGTTTTATTTTATCATTTCTCGCTCAGGTCCTCTTTAGGCTTATCTTTATTGACAATAATAAAATGTATGGTTTATATCCACCTTTGTGGATATGGTAGTTCTCAATGACATGATTTTGTTATATGCAGTCAGATTGATCATTATTAGCAatcttgataaagatgagcaaaaaagactacaatactataatatataaatatgtaaTATACAacatacaaatactgagctatatggTAAGTAAAAAATGAGGacattttatactaatacaattgtttagagaaataaatattttttaacaggtaatacaaaaacaaactaaaaaagataggggtcaaaatgattggcacccctgttttcaatactccagcaccctcccttTGAGAGGATAATTACACCGTTACACtgagccttaatctaaaatgttttacgagATTGGAGAACACGTTCGGAGAggtcttagaccattcctccattcagaatctttccagatccttgatatcattTGCCTGCTCTTATGGACTactctcttcaattcaaaccacaggatACTGATATGGCCATTGCACAATGTTGATTTTGTGATTGTTTTGAttagtgcttggggttattgtcttt
>XR_005035243.1
cttggctgtcgaaacgttgatattacatttttgcatctgagctcttagagtgtgcggctctcttttattttcacgtttctactccgctagccagcacctcgtcttaataggtgtgcgtttctttttcttttagatCGTTATGTTACCCAGTAAACAGCACCCTACCGACAAAAAAAGCTCTTAAACGATGCCGAATGATAATTATTTTCCTGACACTGGTCATAGACCCAGACAAGATTACTTTGAATATAGTCAAAGGGAGCGTGATAAGATCATTATTTCGGAGTCCCTTTTTGACATGCCGGGAGGTAATTCCGACCCCTCGAAAGAACTATTACATTTATCTAAGCGCCAGACGAGAACGCATCTACATATAGTTACTCTTAGTGATTATGTGCGTCGAGGCATTATTCCACGGGGACTCAGGTGGCAAAAAGAACCATCATTGGGACAGCGCACAGATGATTACTGTGAGCGCTGGTGTGCCATCCTGAACAAATGCTCTATTGATTTAATGACATTAATTGTTGACCAGTTGAAGGATTTTATTGAAATGGATAACACGATTAAAGACAAACGCACAGCTCTACAAACAATTGTTAATGATGATGGCATATTCAATGAACTGATGAAAACTAACCAAGCGCTCCAGGACAAGTTGTCTACAGAAATAAAGGAATTTGAAATCAAGAAATTCAACCAAGACAAAAAAGACGAGACCGATGGTAAAGTCTACTTCTGGAGAAACCCTGACAAAAGAggtcctgctccccctctccatGACAGACGCAGGAGGGATGCCGCTTACTTCTATCCACCCTTGTCTGATCAACGCTCCACAACCAGCGCCTCATCGGCTTCCAGTGGTAGTTTTTTATTCAACGAGAGACTGGACGGACGGAAGGGCGGAGGAGGCCGCAGGCACGCGCATCGACGAGATGTCGCACCCGACGGGattgaggtgcaccaatgaccagctctgaaaccagattgcattgcagagaagatGGCCCTGTTGGAGCTCTAGGAGATGGTTTTAACATGGAAGCATCTTCTTCAGGGAGATCTACAGGATGTTTTCAGCCAGTGTAAGCCTCCTGGCAgagacaaccaggtttttggctaaaatgtcctggtacttggtaaagttcatgatgccgttgaccttacgggccccaggaccagtggaagcaaatcATCTTACTGGGATGAGTAAGCAGTTAGCGGACAGCAGACAAAGCTACAGCATGAGGTCTGGAGCCCTTGGCACCATGGGCTGGAATGCcccagaggtcctggatgacagcaGGAAAGTAAACCCTGAGTAAAACAGGATTGGCCCATTGCTCAAAGGAACAGTTCACCCTAAAAAGTTGATCTTCTGTTGTGGAGATCaagctacagtatattacacatACGTACATAAGAAAGATAGGCACCATCTACACAACCATGGTGTGGGATGTGGACCATGCTTGACATTAGACCACTTTTGGGGATAAAAGATGAACCACTTTCCATCCATAAGTTTATGCCAGTAAAGtcatattatatgtatatatttttaaatgtgatGGAACCAGGAAGTTTAGGTACAACTTTATGATTGCCAATAGAtcatttgttcgttcgacatggtgggatctttttgtgtctgtaaaatgaattatgtgagaaatggcagtggaaacgGCTtcattgatataataaccatcatactgaagtaaacttggagtcacacaatgatatgttgtgtggtcctcccactacgaatTTGTTGGCTAGAGAGCacatgccaagaccagagtaggcacatttctatttaatgcaacagtttttgtgacaaaactattggTAGAATTGAAAATACAATGGAAACACATTCAACTTCTGAGttttatttggtacatgaaaacttaagtgaaaaagtacattttgtgtacACTATGTCATCACACTGATTTTTATCCACAGATTTATATCCTTAACAAGTTGTATCCTCAACATATTTGCTTACTAAATATGCTACCTGTATATGAAATAAATGTTGAGACAGATTAAGTTTACTGTGACTGTTGCATTCATGAGTATTTAACGTGCACTATATAGTAATTTTCCTATGTAGCTCGTTGGTATGTTTTAGTTTTCATGCCTTGTGGAGAACTAGTCGGCTGAAGATTTCCTGACAGGAAGACTATATTTATAGGATATCTAACTTTAAACCAGGACATTGTGAGGTATTTCAATCTTGCTGCATTATGAGACTTGACGAGGGGATTGGTGTGTTTTACAGGTTTTAGAATAAATTATTAGAATGTACTGTGTGGAATACTCATTGCATGTATTTTCTCTTGCCAGATCTATGTAAATTCTGGTTGTATAAAGGAGGGTCTGTCAGGGATTTTCTCTGTGCCACAAGAAACAAGAAGCActccgggggcaaactacctgccctccaggacacc
>XR_005035242.1
cttggctgtcgaaacgttgatattacatttttgcatctgagctcttagagtgtgcggctctcttttattttcacgtttctactccgctagccagcacctcgtcttaataggtgtgcgtttctttttcttttagatCGTTATGTTACCCAGTAAACAGCACCCTACCGACAAAAAAAGCTCTTAAACGATGCCGAATGATAATTATTTTCCTGACACTGGTCATAGACCCAGACAAGATTACTTTGAATATAGTCAAAGGGAGCGTGATAAGATCATTATTTCGGAGTCCCTTTTTGACATGCCGGGAGGTAATTCCGACCCCTCGAAAGAACTATTACATTTATCTAAGCGCCAGACGAGAACGCATCTACATATAGTTACTCTTAGTGATTATGTGCGTCGAGGCATTATTCCACGGGGACTCAGGTGGCAAAAAGAACCATCATTGGGACAGCGCACAGATGATTACTGTGAGCGCTGGTGTGCCATCCTGAACAAATGCTCTATTGATTTAATGACATTAATTGTTGACCAGTTGAAGGATTTTATTGAAATGGATAACACGATTAAAGACAAACGCACAGCTCTACAAACAATTGTTAATGATGATGGCATATTCAATGAACTGATGAAAACTAACCAAGCGCTCCAGGACAAGTTGTCTACAGAAATAAAGGAATTTGAAATCAAGAAATTCAACCAAGACAAAAAAGACGAGACCGATGGTAAAGTCTACTTCTGGAGAAACCCTGACAAAAGAggtcctgctccccctctccatGACAGACGCAGGAGGGATGCCGCTTACTTCTATCCACCCTTGTCTGATCAACGCTCCACAACCAGCGCCTCATCGGCTTCCAGTGGTAGTTTTTTATTCAACGAGAGACTGGACGGACGGAAGGGCGGAGGAGGCCGCAGGCACGCGCATCGACGAGATGTCGCACCCGACGGGattgaggtgcaccaatgaccagctctgaaaccagattgcattgcagagaagatGGCCCTGTTGGAGCTCTAGGAGATGGTTTTAACATGGAAGCATCTTCTTCAGGGAGATCTACAGGATGTTTTCAGCCAGTGTAAGCCTCCTGGCAgagacaaccaggtttttggctaaaatgtcctggtacttggtaaagttcatgatgccgttgaccttacgggccccaggaccagtggaagcaaatcATCTTACTGGGATGAGTAAGCAGTTAGCGGACAGCAGACAAAGCTACAGCATGAGGTCTGGAGCCCTTGGCACCATGGGCTGGAATGCcccagaggtcctggatgacagcaGGAAAGTAAACCCTGAGTAAAACAGGATTGGCCCATTGCTCAAAGGAACAGTTCACCCTAAAAAGTTGATCTTCTGTTGTGGAGATCaagctacagtatattacacatACGTACATAAGAAAGATAGGCACCATCTACACAACCATGGTGTGGGATGTGGACCATGCTTGACATTAGACCACTTTTGGGGATAAAAGATGAACCACTTTCCATCCATAAGTTTATGCCAGTAAAGtcatattatatgtatatatttttaaatgtgatGGAACCAGGAAGTTTAGGTACAACTTTATGATTGCCAATAGAtcatttgttcgttcgacatggtgggatctttttgtgtctgtaaaatgaattatgtgagaaatggcagtggaaacgGCTtcattgatataataaccatcatactgaagtaaacttggagtcacacaatgatatgttgtgtggtcctcccactacgaatTTGTTGGCTAGAGAGCacatgccaagaccagagtaggcacatttctatttaatgcaacagtttttgtgacaaaactattggTAGAATTGAAAATACAATGGAAACACATTCAACTTCTGAGttttatttggtacatgaaaacttaagtgaaaaagtacattttgtgtacACTATGTCATCACACTGATTTTTATCCACAGATTTATATCCTTAACAAGTTGTATCCTCAACATATTTGCTTACTAAATATGCTACCTGTATATGAAATAAATGTTGAGACAGATTAAGTTTACTGTGACTGTTGCATTCATGAGTATTTAACGTGCACTATATAGTAATTTTCCTATGTAGCTCGTTGGTATGTTTTAGTTTTCATGCCTTGTGGAGAACTAGTCGGCTGAAGATTTCCTGACAGGAAGACTATATTTATAGGATATCTAACTTTAAACCAGGACATTGTGAGGTATTTCAATCTTGCTGCATTATGAGACTTGACGAGGGGATTGGTGTGTTTTACAGGTTTTAGAATAAATTATTAGAATGTACTGTGTGGAATACTCATTGCATGTATTTTCTCTTGCCAGATCTATGTAAATTCTGGTTGTATAAAGGAGGGTCTGTCAGGGATTTTCTCTGTGCCACAAGAAACAAGGTATGGGTATCTTTCCAGCTAAATGGAACAACAATACTTTTATGGTGTACTATTTATGGCTGGAGGGAAGGAGTGACAGAATTATAATTGGATGTAACAGTGTATGTATAACCTTCTCTGTGCAACAGCCTCGTATGTATGTTTACTTGATTAAAGATGGACGTTTATATTAATCGTTTTTCTTTTGTCCCCCTTCCTATAGAAGCActccgggggcaaactacctgccctccaggacacctacaccacccgatgttacaggaaggccataaagatcatcaaagacaacaaccacc

Function

NR:

description
PREDICTED: uncharacterized protein LOC106595186

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035241.1 False 1704 mRNA 0.40 3 96072905 96078797
XR_005035243.1 False 2465 mRNA 0.42 6 96072905 96080497
XR_005035242.1 True 2722 mRNA 0.41 5 96072905 96080552

Neighbor

gene id symbol gene type direction distance location
LOC118937799 NA coding upstream 7691 96064215 ~ 96065214 (+)
LOC110538768 ern1 coding upstream 46104 95996719 ~ 96026801 (+)
LOC110539033 LOC106599243 coding upstream 78131 95954955 ~ 95994774 (+)
LOC110486806 LOC106606638 coding upstream 224466 95823882 ~ 95848439 (+)
LOC110538761 LOC106606716 coding upstream 257678 95629494 ~ 95815227 (+)
LOC110538773 LOC106606683 coding downstream 22814 96103366 ~ 96116558 (+)
LOC110539035 LOC106588841 coding downstream 44390 96124942 ~ 96139036 (+)
tbc1d16 LOC106606686 coding downstream 59221 96139773 ~ 96165394 (+)
LOC118937800 LOC106606337 coding downstream 141296 96221848 ~ 96301339 (+)
LOC110517345 LOC106596483 coding downstream 462318 96542870 ~ 96594168 (+)
G1130213 NA non-coding upstream 3240 96069389 ~ 96069665 (+)
G1130212 LOC106601757 non-coding upstream 3723 96068886 ~ 96069182 (+)
G1130181 NA non-coding upstream 117154 95955443 ~ 95955751 (+)
G1130178 NA non-coding upstream 118977 95953696 ~ 95953928 (+)
G1130225 NA non-coding downstream 41847 96122399 ~ 96122646 (+)
G1130311 NA non-coding downstream 94059 96174611 ~ 96174848 (+)
G1130325 NA non-coding downstream 120529 96201081 ~ 96201723 (+)
G1130326 NA non-coding downstream 124224 96204776 ~ 96207210 (+)
G1130337 NA non-coding downstream 153443 96233995 ~ 96235139 (+)
G1129772 NA other upstream 553263 95519178 ~ 95519642 (+)
G1129613 LOC106601744 other upstream 763208 95300784 ~ 95309697 (+)
G1129601 LOC106601741 other upstream 805849 95266518 ~ 95267056 (+)
G1129591 LOC106601742 other upstream 819582 95252420 ~ 95253323 (+)
G1130570 alg1 other downstream 537704 96618256 ~ 96633452 (+)
LOC118937804 LOC106591169 other downstream 597980 96676774 ~ 96702725 (+)
G1130780 LOC106606334 other downstream 1081710 97162262 ~ 97163079 (+)
G1131438 NA other downstream 1740172 97820724 ~ 97822057 (+)
LOC118936514 smim22 other downstream 2179457 98259570 ~ 98268855 (+)

Expression


Co-expression Network