LOC118937800 (LOC106606337)


Basic Information

Item Value
gene id LOC118937800
gene name LOC106606337
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96221848 ~ 96301339 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939362.1
atacacacacacgcatgcacacacacgggccgacacacccatccacacacacacacagtggcggTCTGAGTACTTCTCTGTTTATTGAATACAGGGTAGTATTATCAGCACATGGTTTCCTGACTGCTCCTGTCTCCACTAGAGacaCAACTAAGGTGCTGGAGCAGGAGATACCCGCctcgatggaggagagagggatggaggaagtgaAACCGTTAGCAGTAGAAGACAAAGCAGCAGCAGAGGAAGCTGTGGAGGAGAGAGTAGCTCAGGAGAAGACAGAGGATAGCACAGCGCAGAATaaagagacggaggagagagaagtagacgtagagagagagatggagggagaggtagaggtcgTGACCCCTTGCCCTACAGAGAGCCATGGTCTCCAGGGAACCATTAAAGGTCATGACCTCTTCGGCTATGTGGGCATCGAGGCTGTTCTGGACCAGATGAGACGCAAGACCATGAAGGCTGGCTTCGAGTTCAACATCATGGTCGTGGgtcagagtggactagggaagtctaccctggtcaacactctGTTCAAGTCTAAAGTCAGTCGCAAATCCTGCAGCCCAAACTACGAAGAGAAGATCTCCAAGACTGTCAAACTGCAGTCCGTCAGCCatgTGATAGAGGAGAAGGGAGTGAAGATGAAGCTCACAGTGATTGACACGCCAGGATTTGGAGACCAGATAAACAACGAAAACTgttGGGAGCCTATAGTGAGTTATGTTAATGAGCAGTATGAGAGGTACCTGAAAGAAGAGTTGTACGTCAACAGGAAGCCGAGGATCCCTGACACACGCGTCCACTGCTGTGTCTACTTCCTGCCTGCCACCGGACACTGGTTACGTCCCATAGACGTGGAGTTCATGAAGAGGCTGGGGAAGATAGTCAGCATCGTACCGATCATCGCTAAGGCAGACACACTCACCATGGAGGAGAGACAAGAGTTTAAACAGAGGATAAGACAGGACCTGAAGGCCAATGGGATCCGAGTCTACCCTCAGACTGAGTACGACGAAGATCCAGAGGACAGGATACTCAACGACAAGATCaggGAAAACATTCCGTTTGCGGTGGTGGGGACAGACAAGGAACACCAGGTAAACGGGAACAAGGTCCTGGGCAGGAAAACCAAATGGGGCATCATAGAGGTTGAAAACGTGGCACATTGTGAGTTTACCAACTTGAGAGACCTGCTGATTAGGTCCCACCTGCAGGACCTGAAGGACGTGACCCACAACATCCACTATGAGACATTCCGCGTCAGGAGACTGAACGAGAGTAACCTGACCGTCCACGGTCTGGCCCTGTCCTGCTTTCCAATGGAGAACGGGACCCACGGAACCAATGGAACCTCGGACAGGAGCGAATCAGAGAGCCACCTCTGAGGGGGACCACAGAATGCGTCACACACAGCAGCACCTCCAGCTTCCTGCTCACagcttcctgtttcctgttttgaCTGCAAAATTGTTGGTCGACTGTTTCCCCCAATCGGAAcacgagaaagagagcgaaagaaagaaagaggaactTTTTTTTAACAAAGGAGAGATGTTTTCGGTGGCCACCACACCTTGGATTTTGAACATTTTATTGAGTTTTACTAAAGACATTATTGATAAGAAATGCATTTAAACTTCATATATGAATATATTTTCTCAGAATGAGTTTATATTTCCTGgaaagatgagagatggagaggaggagagagggatggagagagaaaaacagagggggagagtgagggatggaga
>XM_036939364.1
agtggcggTCTGAGTACTTCTCTGTTTATTGAATACAGGGTAGTATTATCAGCACATGGTTTCCTGACTGCTCCTGTCTCCACTAGAGGCAGCTGTATGGTTGGGGACTGGGgccgtggagagagagaacaggaatcGGACTGGCTTTTGTGAATGAGAGAAGacaCAACTAAGGTGCTGGAGCAGGAGATACCCGCctcgatggaggagagagggatggaggaagtgaAACCGTTAGCAGTAGAAGACAAAGCAGCAGCAGAGGAAGCTGTGGAGGAGAGAGTAGCTCAGGAGAAGACAGAGGATAGCACAGCGCAGAATaaagagacggaggagagagaagtagacgtagagagagagatggagggagaggtagaggtcgTGACCCCTTGCCCTACAGAGAGCCATGGTCTCCAGGGAACCATTAAAGGTCATGACCTCTTCGGCTATGTGGGCATCGAGGCTGTTCTGGACCAGATGAGACGCAAGACCATGAAGGCTGGCTTCGAGTTCAACATCATGGTCGTGGgtcagagtggactagggaagtctaccctggtcaacactctGTTCAAGTCTAAAGTCAGTCGCAAATCCTGCAGCCCAAACTACGAAGAGAAGATCTCCAAGACTGTCAAACTGCAGTCCGTCAGCCatgTGATAGAGGAGAAGGGAGTGAAGATGAAGCTCACAGTGATTGACACGCCAGGATTTGGAGACCAGATAAACAACGAAAACTgttGGGAGCCTATAGTGAGTTATGTTAATGAGCAGTATGAGAGGTACCTGAAAGAAGAGTTGTACGTCAACAGGAAGCCGAGGATCCCTGACACACGCGTCCACTGCTGTGTCTACTTCCTGCCTGCCACCGGACACTGGTTACGTCCCATAGACGTGGAGTTCATGAAGAGGCTGGGGAAGATAGTCAGCATCGTACCGATCATCGCTAAGGCAGACACACTCACCATGGAGGAGAGACAAGAGTTTAAACAGAGGATAAGACAGGACCTGAAGGCCAATGGGATCCGAGTCTACCCTCAGACTGAGTACGACGAAGATCCAGAGGACAGGATACTCAACGACAAGATCaggGAAAACATTCCGTTTGCGGTGGTGGGGACAGACAAGGAACACCAGGTAAACGGGAACAAGGTCCTGGGCAGGAAAACCAAATGGGGCATCATAGAGGTTGAAAACGTGGCACATTGTGAGTTTACCAACTTGAGAGACCTGCTGATTAGGTCCCACCTGCAGGACCTGAAGGACGTGACCCACAACATCCACTATGAGACATTCCGCGTCAGGAGACTGAACGAGAGTAACCTGACCGTCCACGGTCTGGCCCTGTCCTGCTTTCCAATGGAGAACGGGACCCACGGAACCAATGGAACCTCGGACAGGAGCGAATCAGAGAGCCACCTCTGAGGGGGACCACAGAATGCGTCACACACAGCAGCACCTCCAGCTTCCTGCTCACagcttcctgtttcctgttttgaCTGCAAAATTGTTGGTCGACTGTTTCCCCCAATCGGAAcacgagaaagagagcgaaagaaagaaagaggaactTTTTTTTAACAAAGGAGAGATGTTTTCGGTGGCCACCACACCTTGGATTTTGAACATTTTATTGAGTTTTACTAAAGACATTATTGATAAGAAATGCATTTAAACTTCATATATGAATATATTTTCTCAGAATGAGTTTATATTTCCTGgaaagatgagagatggagaggaggagagagggatggagagagaaaaacagagggggagagtgagggatggagag
>XM_036939365.1
ACTTCTCTGTTTATTGAATACAGGGTAGTATTATCAGCACATGGTTTCCTGACTGCTCCTGTCTCCACTAGAGGTAAATAACTGTTTCCATTATTCTgacgaggtagaggagaggggagtgtgagggggaaggagagaagtggaagagaagaggggagttTAAGGGGTAAGGGCCCTCGGTGCCTTCAATAATGGCCTAACCGTCTCAAAGGAATCACAACAGacaCAACTAAGGTGCTGGAGCAGGAGATACCCGCctcgatggaggagagagggatggaggaagtgaAACCGTTAGCAGTAGAAGACAAAGCAGCAGCAGAGGAAGCTGTGGAGGAGAGAGTAGCTCAGGAGAAGACAGAGGATAGCACAGCGCAGAATaaagagacggaggagagagaagtagacgtagagagagagatggagggagaggtagaggtcgTGACCCCTTGCCCTACAGAGAGCCATGGTCTCCAGGGAACCATTAAAGGTCATGACCTCTTCGGCTATGTGGGCATCGAGGCTGTTCTGGACCAGATGAGACGCAAGACCATGAAGGCTGGCTTCGAGTTCAACATCATGGTCGTGGgtcagagtggactagggaagtctaccctggtcaacactctGTTCAAGTCTAAAGTCAGTCGCAAATCCTGCAGCCCAAACTACGAAGAGAAGATCTCCAAGACTGTCAAACTGCAGTCCGTCAGCCatgTGATAGAGGAGAAGGGAGTGAAGATGAAGCTCACAGTGATTGACACGCCAGGATTTGGAGACCAGATAAACAACGAAAACTgttGGGAGCCTATAGTGAGTTATGTTAATGAGCAGTATGAGAGGTACCTGAAAGAAGAGTTGTACGTCAACAGGAAGCCGAGGATCCCTGACACACGCGTCCACTGCTGTGTCTACTTCCTGCCTGCCACCGGACACTGGTTACGTCCCATAGACGTGGAGTTCATGAAGAGGCTGGGGAAGATAGTCAGCATCGTACCGATCATCGCTAAGGCAGACACACTCACCATGGAGGAGAGACAAGAGTTTAAACAGAGGATAAGACAGGACCTGAAGGCCAATGGGATCCGAGTCTACCCTCAGACTGAGTACGACGAAGATCCAGAGGACAGGATACTCAACGACAAGATCaggGAAAACATTCCGTTTGCGGTGGTGGGGACAGACAAGGAACACCAGGTAAACGGGAACAAGGTCCTGGGCAGGAAAACCAAATGGGGCATCATAGAGGTTGAAAACGTGGCACATTGTGAGTTTACCAACTTGAGAGACCTGCTGATTAGGTCCCACCTGCAGGACCTGAAGGACGTGACCCACAACATCCACTATGAGACATTCCGCGTCAGGAGACTGAACGAGAGTAACCTGACCGTCCACGGTCTGGCCCTGTCCTGCTTTCCAATGGAGAACGGGACCCACGGAACCAATGGAACCTCGGACAGGAGCGAATCAGAGAGCCACCTCTGAGGGGGACCACAGAATGCGTCACACACAGCAGCACCTCCAGCTTCCTGCTCACagcttcctgtttcctgttttgaCTGCAAAATTGTTGGTCGACTGTTTCCCCCAATCGGAAcacgagaaagagagcgaaagaaagaaagaggaactTTTTTTTAACAAAGGAGAGATGTTTTCGGTGGCCACCACACCTTGGATTTTGAACATTTTATTGAGTTTTACTAAAGACATTATTGATAAGAAATGCATTTAAACTTCATATATGAATATATTTTCTCAGAATGAGTTTATATTTCCTGgaaagatgagagatggagaggaggagagagggatggagagagaaaaacagagggggagagtgagggatggagag
>XM_036939363.1
TGAACTGCTTTAGCCATCACGCCCGccctcacactcacacagagagagagagagacagacagacagcgaggtagtgcaagagagagggagaaagccagacagagagacagagagaggtagaggtattaGAGGCATCAGCTCAAATCCTCCCCATCGCCTCTCCAGCTCAGGAAAGCGAGTGAGTGTATAAACTGGGCAAAGAAAGAGAAGCAAAATAAGGACTTTCTTCTTCTCTGCCTGGTGGGCAGGCAGCTGTATGGTTGGGGACTGGGgccgtggagagagagaacaggaatcGGACTGGCTTTTGTGAATGAGAGAAGacaCAACTAAGGTGCTGGAGCAGGAGATACCCGCctcgatggaggagagagggatggaggaagtgaAACCGTTAGCAGTAGAAGACAAAGCAGCAGCAGAGGAAGCTGTGGAGGAGAGAGTAGCTCAGGAGAAGACAGAGGATAGCACAGCGCAGAATaaagagacggaggagagagaagtagacgtagagagagagatggagggagaggtagaggtcgTGACCCCTTGCCCTACAGAGAGCCATGGTCTCCAGGGAACCATTAAAGGTCATGACCTCTTCGGCTATGTGGGCATCGAGGCTGTTCTGGACCAGATGAGACGCAAGACCATGAAGGCTGGCTTCGAGTTCAACATCATGGTCGTGGgtcagagtggactagggaagtctaccctggtcaacactctGTTCAAGTCTAAAGTCAGTCGCAAATCCTGCAGCCCAAACTACGAAGAGAAGATCTCCAAGACTGTCAAACTGCAGTCCGTCAGCCatgTGATAGAGGAGAAGGGAGTGAAGATGAAGCTCACAGTGATTGACACGCCAGGATTTGGAGACCAGATAAACAACGAAAACTgttGGGAGCCTATAGTGAGTTATGTTAATGAGCAGTATGAGAGGTACCTGAAAGAAGAGTTGTACGTCAACAGGAAGCCGAGGATCCCTGACACACGCGTCCACTGCTGTGTCTACTTCCTGCCTGCCACCGGACACTGGTTACGTCCCATAGACGTGGAGTTCATGAAGAGGCTGGGGAAGATAGTCAGCATCGTACCGATCATCGCTAAGGCAGACACACTCACCATGGAGGAGAGACAAGAGTTTAAACAGAGGATAAGACAGGACCTGAAGGCCAATGGGATCCGAGTCTACCCTCAGACTGAGTACGACGAAGATCCAGAGGACAGGATACTCAACGACAAGATCaggGAAAACATTCCGTTTGCGGTGGTGGGGACAGACAAGGAACACCAGGTAAACGGGAACAAGGTCCTGGGCAGGAAAACCAAATGGGGCATCATAGAGGTTGAAAACGTGGCACATTGTGAGTTTACCAACTTGAGAGACCTGCTGATTAGGTCCCACCTGCAGGACCTGAAGGACGTGACCCACAACATCCACTATGAGACATTCCGCGTCAGGAGACTGAACGAGAGTAACCTGACCGTCCACGGTCTGGCCCTGTCCTGCTTTCCAATGGAGAACGGGACCCACGGAACCAATGGAACCTCGGACAGGAGCGAATCAGAGAGCCACCTCTGAGGGGGACCACAGAATGCGTCACACACAGCAGCACCTCCAGCTTCCTGCTCACagcttcctgtttcctgttttgaCTGCAAAATTGTTGGTCGACTGTTTCCCCCAATCGGAAcacgagaaagagagcgaaagaaagaaagaggaactTTTTTTTAACAAAGGAGAGATGTTTTCGGTGGCCACCACACCTTGGATTTTGAACATTTTATTGAGTTTTACTAAAGACATTATTGATAAGAAATGCATTTAAACTTCATATATGAATATATTTTCTCAGAATGAGTTTATATTTCCTGgaaagatgagagatggagaggaggagagagggatggagagagaaaaacagagggggagagtgagggatggagag

Function

NR:

description
PREDICTED: neuronal-specific septin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939362.1 False 1775 mRNA 0.50 10 96221848 96301338
XM_036939364.1 False 1795 mRNA 0.50 11 96221904 96301339
XM_036939365.1 False 1855 mRNA 0.49 10 96221919 96301339
XM_036939363.1 True 1955 mRNA 0.50 10 96226587 96301339

Neighbor

gene id symbol gene type direction distance location
tbc1d16 LOC106606686 coding upstream 56454 96139773 ~ 96165394 (+)
LOC110539035 LOC106588841 coding upstream 82812 96124942 ~ 96139036 (+)
LOC110538773 LOC106606683 coding upstream 105290 96103366 ~ 96116558 (+)
LOC110538780 LOC106606683 coding upstream 119057 96029181 ~ 96102791 (+)
LOC110517345 LOC106596483 coding downstream 241531 96542870 ~ 96594168 (+)
LOC110512418 alg1 coding downstream 316900 96618239 ~ 96633339 (+)
LOC118937803 NA coding downstream 325769 96627108 ~ 96630599 (+)
LOC110494405 pigq coding downstream 335859 96637198 ~ 96670446 (+)
LOC110494408 NA coding downstream 370126 96671465 ~ 96672625 (+)
G1130326 NA non-coding upstream 14638 96204776 ~ 96207210 (+)
G1130325 NA non-coding upstream 20125 96201081 ~ 96201723 (+)
G1130311 NA non-coding upstream 47000 96174611 ~ 96174848 (+)
G1130225 NA non-coding upstream 99202 96122399 ~ 96122646 (+)
G1130213 NA non-coding upstream 152183 96069389 ~ 96069665 (+)
G1130304 NA non-coding downstream 490 96301829 ~ 96305537 (+)
G1130305 NA non-coding downstream 4529 96305868 ~ 96307122 (+)
G1130370 NA non-coding downstream 65704 96367043 ~ 96367312 (+)
G1130374 NA non-coding downstream 74087 96375426 ~ 96375679 (+)
G1130376 NA non-coding downstream 79249 96380588 ~ 96380801 (+)
LOC110538761 LOC106606716 other upstream 591273 95629494 ~ 95815227 (+)
G1129772 NA other upstream 702206 95519178 ~ 95519642 (+)
G1129613 LOC106601744 other upstream 912151 95300784 ~ 95309697 (+)
G1129601 LOC106601741 other upstream 954792 95266518 ~ 95267056 (+)
G1129591 LOC106601742 other upstream 968525 95252420 ~ 95253323 (+)
G1130570 alg1 other downstream 316917 96618256 ~ 96633452 (+)
LOC118937804 LOC106591169 other downstream 377193 96676774 ~ 96702725 (+)
G1130780 LOC106606334 other downstream 860923 97162262 ~ 97163079 (+)
G1131438 NA other downstream 1519385 97820724 ~ 97822057 (+)
LOC118936514 smim22 other downstream 1958670 98259570 ~ 98268855 (+)

Expression


Co-expression Network