LOC118937802 (fbxl16)


Basic Information

Item Value
gene id LOC118937802
gene name fbxl16
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96314326 ~ 96365986 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939367.1
CATTTTGgagtgaaatgtttactgttgatttcttttttttttctatttttctcaTTTTTGTTCAATTCAATTGCTCaggcaatgtaaacacatgttgCCAATaaagcatgggaaacatgttgaactgaaattgaattgagagagagagaacgaaagagagagagagagagagagtaccgcctcagcctcctctcttcctctcctcctctgttgagTTCCGCTGATGTCAGTGAGCCAGGCGATGTCATGTTGGTTTCTATTTACAGGgttctcgttccctctctctctctccccgacaCTGATTCGAACGCACCACATAGTTATATCCGCTGACACCGTGGAATGATGCGCCGATGAAACAAACAACACCGGACAACACATCGTCCCGATTTCACGCATATTCCCTCTTATTCTGTCCTCGTCGCTACCGATACAAAATTATGCACCTTTCAAACGATTCGCATCGCGTCGTAGCTACAACAATTCAATAACATCCCCCGCTCTCCGCCATTCCCTGTGGATGCTGCTGGTAGTATGGTGATGCGGGCGATAAAATAGAGCTCCGTTTGGTGAAAGACTTGCGAGGCTTCGGGTCAACCGGGGGAGGTGACGGGGTTCAGTTTAAAGGTTCCCAATGTTGAACATGTCGACCCCCAGCGAGCTCAAGTCTCCGTGTGTCCCGAGGAACGGCATGGTCAAGCTCCCCCCTCAGCCCAACGGTTTGGGCAGCGCCAGCATCACCAAGGGCACGCCCGCCGCCAAGAACCGCCTGTGCCAATCCTCCTCCGTGCCCGGCATCCTACCCCCGCCTTCCCTACCCTACCACCTGGACCCCCTCAACCCCCTGGGTCCCTCTCTCCTGGGTCCAGACCTGGACCACAGCCCCCTGATGGTCCTCAAACCCCCGCTGCGCCAGGTCCCCCTCACCTTCCCCAAGCCTCACCTTCCCCTCACCCTGCCTCTGGCCCTTCTGCCGCCCCTGGAGCGCCAGCTGGCCCTGGATGAGAAGCTGCTCAACAGGCTGCTGTGGTATTTCACCACGGCTGAGAAGTGTGTCCTGGCCCAGGTGTGTAGGACCTGGAGGAAAGTGCTGTACCAGTCTAAGTTCTGGGAGGGTGTCACGCCCATCCTCCACGCCAAGGAGCTGTACGCCCTGCTCCCCGGCGGAGACAAGGAGTTTGTCAGCCTGCAGGCCTTCGCTCTCAGGGGGTTCCAGGCGTTCTGTCTGGTGGGAGTTTCAGACCTGGACATCTGTGAGTTCATTGATAACTACCCCTTGTCCAAGAAGGGGGTGAAGTCGGTCAGTCTGAAGAGGTCCACCATTACAGACGCAGGCCTGGAGGTGATGCTGGAACAGATGCAGGGTCTGATGCACCTGGAGTTGGCCGGTTGTAATGACTTCACGGAGGCCGGTCTGTGGTCCAGCCTGAACGCACGGCTCACCTCGCTCAGCGTCAGCGACTGTATCAACGTAGCGGACGACGCCATCGCTGCCATCTCACAGCTACTGCCCAACCTGTCAGAGCTCAGCCTGCAGGCCTACCACGTAACCGACACAGCCATGGCTTACTTCACAGCCAAACAGggCTACACCACTCACACACTGCGTCTCCACTCGTGTTGGGAGATCACCAACCACGGTGTGGTTAACATGGTCCACAGCCTGCCCAACCTCACGGCTCTGAGCCTGTCAGGCTGCTCTAAAATCACTGATGACGGGGTGGAGCTGGTAGCAGAGAACCTGAGGAAGCTGCGGAGCCTGGACCTCTCCTGGTGCCCACGCATCACTGACATGGCCCTGGAGTACATCGCCTGTGACCTCCACAAACTAGAGGAGCTGGTACTGGACAGatGTGTGAGGATTACAGATACAGGTCTAGGTTACCTGTCCACCATGTCTTCTTTGAGGAGTCTCTACCTGCGCTGGTGCTGTCAGGTGCAGGACTTTGGGCTACAGCACCTGTTTGGCATGAGGAGTCTACGTCTTCTCTCTCTCGCAGGTTGTCCACTCCTAACCACTACAGGTCTATCTGGTTTGATCCAGATCCAGGATCTAGAGGAGTTGGAGTTGACCAACTGTCCTGGAGCCACAGCCGAACTCTTCAAGTACTACTCACAACACCTGACACGCTGCATGGTCATCGAGTAGCCCCCCGCCCCCGGATCCCCATCACACCCCCCTCTAACCTACCACCTTATCCAACTACCAACTGACCTGCCTACCAATTCCCGACCCCAACTACCCCAACTACCGACCACTCCCTTACTTCAGCCCAACGAACGCAGAGGAGGAATGATGACGATGTCGATGGAGCCAGCCAGGATCTCTGCTCCAGCCAGGATCTCTGCTCCAGCTTGGATCTCTGCTCCAG
>XM_036939366.1
gagaggaaaatCACGCTTTGTGTGACAGTGGACGCATATTGAATGAAGAGGTATCGGATGCCCCTTATTTGAGCGTTAACGGATTTTGAGggtaaaacatatattttgcaTAACAGACGCGTTTTTTTTAATCCGCCTCCGGATTTAAGGATCGGATTCACGCGTCGATGGCATCAGTACCGGAGGGTGTACCTCTTGCCTCCACCAGGCACAACCGGTAACGGGaagggctgctgctgctgccgttTCTAGGGTTCTATATTTATTTCTTCTCGTGCGAGCTGCAACGTTGAGGGAAACGTGACCAGAGTAAACCGGGACATTTCGCCGATCATGGAGTAATGCCCGAGTGAGCAGCGTATGAGAGGTTCCCAATGTTGAACATGTCGACCCCCAGCGAGCTCAAGTCTCCGTGTGTCCCGAGGAACGGCATGGTCAAGCTCCCCCCTCAGCCCAACGGTTTGGGCAGCGCCAGCATCACCAAGGGCACGCCCGCCGCCAAGAACCGCCTGTGCCAATCCTCCTCCGTGCCCGGCATCCTACCCCCGCCTTCCCTACCCTACCACCTGGACCCCCTCAACCCCCTGGGTCCCTCTCTCCTGGGTCCAGACCTGGACCACAGCCCCCTGATGGTCCTCAAACCCCCGCTGCGCCAGGTCCCCCTCACCTTCCCCAAGCCTCACCTTCCCCTCACCCTGCCTCTGGCCCTTCTGCCGCCCCTGGAGCGCCAGCTGGCCCTGGATGAGAAGCTGCTCAACAGGCTGCTGTGGTATTTCACCACGGCTGAGAAGTGTGTCCTGGCCCAGGTGTGTAGGACCTGGAGGAAAGTGCTGTACCAGTCTAAGTTCTGGGAGGGTGTCACGCCCATCCTCCACGCCAAGGAGCTGTACGCCCTGCTCCCCGGCGGAGACAAGGAGTTTGTCAGCCTGCAGGCCTTCGCTCTCAGGGGGTTCCAGGCGTTCTGTCTGGTGGGAGTTTCAGACCTGGACATCTGTGAGTTCATTGATAACTACCCCTTGTCCAAGAAGGGGGTGAAGTCGGTCAGTCTGAAGAGGTCCACCATTACAGACGCAGGCCTGGAGGTGATGCTGGAACAGATGCAGGGTCTGATGCACCTGGAGTTGGCCGGTTGTAATGACTTCACGGAGGCCGGTCTGTGGTCCAGCCTGAACGCACGGCTCACCTCGCTCAGCGTCAGCGACTGTATCAACGTAGCGGACGACGCCATCGCTGCCATCTCACAGCTACTGCCCAACCTGTCAGAGCTCAGCCTGCAGGCCTACCACGTAACCGACACAGCCATGGCTTACTTCACAGCCAAACAGggCTACACCACTCACACACTGCGTCTCCACTCGTGTTGGGAGATCACCAACCACGGTGTGGTTAACATGGTCCACAGCCTGCCCAACCTCACGGCTCTGAGCCTGTCAGGCTGCTCTAAAATCACTGATGACGGGGTGGAGCTGGTAGCAGAGAACCTGAGGAAGCTGCGGAGCCTGGACCTCTCCTGGTGCCCACGCATCACTGACATGGCCCTGGAGTACATCGCCTGTGACCTCCACAAACTAGAGGAGCTGGTACTGGACAGatGTGTGAGGATTACAGATACAGGTCTAGGTTACCTGTCCACCATGTCTTCTTTGAGGAGTCTCTACCTGCGCTGGTGCTGTCAGGTGCAGGACTTTGGGCTACAGCACCTGTTTGGCATGAGGAGTCTACGTCTTCTCTCTCTCGCAGGTTGTCCACTCCTAACCACTACAGGTCTATCTGGTTTGATCCAGATCCAGGATCTAGAGGAGTTGGAGTTGACCAACTGTCCTGGAGCCACAGCCGAACTCTTCAAGTACTACTCACAACACCTGACACGCTGCATGGTCATCGAGTAGCCCCCCGCCCCCGGATCCCCATCACACCCCCCTCTAACCTACCACCTTATCCAACTACCAACTGACCTGCCTACCAATTCCCGACCCCAACTACCCCAACTACCGACCACTCCCTTACTTCAGCCCAACGAACGCAGAGGAGGAATGATGACGATGTCGATGGAGCCAGCCAGGATCTCTGCTCCAGCCAGGATCTCTGCTCCAGCTTGGATCTCTGCTCCAG

Function

symbol description
fbxl16 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human FBXL16 (F-box and leucine rich repeat protein 16).

NR:

description
PREDICTED: F-box/LRR-repeat protein 16

GO: NA

KEGG:

id description
K10282 FBXL16; F-box and leucine-rich repeat protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939367.1 False 2372 mRNA 0.56 7 96314326 96341124
XM_036939366.1 True 2112 mRNA 0.57 7 96314326 96365986

Neighbor

gene id symbol gene type direction distance location
LOC118937801 NA coding downstream 1321 96209246 ~ 96313547 (-)
LOC110538778 NA coding downstream 317684 95995245 ~ 95996642 (-)
LOC118937923 NA coding downstream 318796 95995389 ~ 95995530 (-)
LOC110486837 LOC105026133 coding downstream 693188 95395260 ~ 95621138 (-)
LOC118937798 LOC106606721 coding downstream 925845 95380385 ~ 95388481 (-)
LOC110516715 LOC103469064 coding upstream 26253 96392239 ~ 96435793 (-)
LOC110538851 LOC106601944 coding upstream 132558 96498544 ~ 96505238 (-)
LOC110494398 clg11h16orf89 coding upstream 239388 96605374 ~ 96610119 (-)
eef2kmt fa86a coding upstream 267428 96633414 ~ 96637111 (-)
LOC110518479 LOC106591170 coding upstream 348304 96714290 ~ 96728931 (-)
G1130456 NA non-coding downstream 8789 96304472 ~ 96305537 (-)
G1130478 NA non-coding downstream 29381 96284479 ~ 96284945 (-)
G1130468 NA non-coding downstream 62587 96236782 ~ 96251739 (-)
G1130471 NA non-coding downstream 70937 96242975 ~ 96243389 (-)
G1130500 NA non-coding upstream 6031 96372017 ~ 96373070 (-)
G1130502 NA non-coding upstream 16159 96382145 ~ 96382371 (-)
G1130504 NA non-coding upstream 20075 96386061 ~ 96387134 (-)
G1130505 NA non-coding upstream 23601 96389587 ~ 96390301 (-)
G1130506 NA non-coding upstream 24637 96390623 ~ 96391019 (-)
G1130145 NA other downstream 468043 95845107 ~ 95846283 (-)
G1130049 NA other downstream 688161 95625758 ~ 95626165 (-)
G1129951 NA other downstream 920359 95392201 ~ 95393967 (-)
G1129544 NA other downstream 1221233 95092622 ~ 95093093 (-)
LOC110511881 LOC106606292 other downstream 1856128 94450540 ~ 94464106 (-)
G1130893 NA other upstream 336421 96701694 ~ 96705588 (-)
LOC110487147 LOC106601974 other upstream 496157 96858442 ~ 96867462 (-)
LOC110519445 smg1 other upstream 610189 96898792 ~ 97043408 (-)

Expression

LOC118937802(fbxl16) Expression in all Baseline Samples

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LOC118937802(fbxl16) Expression in each Bioproject

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LOC118937802(fbxl16) Expression in each Sample
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Co-expression Network