LOC110538851 (LOC106601944)


Basic Information

Item Value
gene id LOC110538851
gene name LOC106601944
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96498544 ~ 96505238 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625833.2
AGCACGAAACTGTCCATTCCGACTCCAGAGATGCAAGGAAAAGTGTTCCACCATTTATTGAGCTCTGTGGGGCCTATCATGAGACATTGAGGGAGGCCAGACGCTGGTATTTGGATGCTTTGTACCCTGCCTCGAAGAATGTAATCACCATTCACAACAATTTCATCCAGCACTTTGGCCAGAGGGAGTTTGAAGAGCTTCTTTCCCTTCAGACCAAGAGGGAAGTTTCCATCGAGGAGAACTTTAAAGATGGCCGCTTTGGATTGACCATCCAGGGGGCTTCTAGAGGGTTCAAAGCTGCTGTGTTAGAGGTGGAAGCCCTGTGCTGCAAAGTCCAAGAGGATTTTGCAAAGGAAGAGTTGAGTTTAATGGGCCTGAAATCTCCCATCAGTTCCCCAAGGAAGCCAGTAGATGACAACAGTTCTGACTATAAAGAGAGACAGCAACATTTTGCCGGACTTCAAATTGTCAGGGTTGAGAAGGTGGAGAACAAAGCTCTGAAGCAGGTCTTTGACCTTAGGAAGAGGCAGTTGCAGGTGTCTACCCCTTCTCAGCGAATGTACCAGCGCTTGCCTGTGCAATTCTGTGACCTGCTATGCAGAGTGGGCTTTCAGATGGAGTTTACACCACCTGACGAGCAAAATCTGGGAGAGGGGATCTACTTCAGCAGCAGTGTCCATGGAGCAGAGAGGCTGTGGAAGGGCTCAGCTGACCAGGAGTACCTGTACTTCATTGAGGCACAGGTGCTGACTGGCAAGTCAATTGTTGGCTGTCCAGGTCTCATCGTGCCACCTCCCTTTGCCAGAGACCCACTCACCTTGTATGACAGTGTGAAAGGAGGCGGAGACACCTGGGTCGTCTTCAATGGTCACCAGGCTCTACCTGAATATCTGATCACCTGCAATAAGCCTACATACGTAAAACCTCACGCATTGTTCAACTGGGGTAAAGCTAAAAAGCCACAAAAGAATGAGGACATTGTCATCGAGGGCCTGGAAGTGGATCCGGCTGTCTTCCACGTTTCTTCCAAAGTGGATCGTTGGATCAAGGACCTGAACCTAAAGGAACCAGAGAGCAGCAGCATCCCACACGACGCTGTCTACCATGACATGAGAATCGAGGAGATGCTGAGGAAGGCCAGGGACAAAAAGTCCTTCAACAGGAACATTACAGCACCTAGCATCATGGTGGATTGGCAGCAGCAGCCAGGGGGACAGTCCCAGAGATTCCCCCCCTTCCATAACTTCCATCTGCAGCAGGCGCTGGACAGGAACCAGCCCCGCGTGGAGGTCTCTGCCCGGAGGAAAATGTACACGTTCACCCTGCCTGACACGACTGCTAACAACACAAGTGGAAACAGCCCCAAAAGCAGACAAATCGACAAGTTAGCAGCTCAACCGATTGAGAGTCTCCCCCGGCATTGGGATGCCATGCCAGCCAACACGTCCTGCCTGTCCTGCCTCATCCAGCCAGGAAGCCCAGAGCACAATGAAGTTTTAAAGCTGTTCCGAGACACCTGCCACAACAAAGTTACACAGATTGAGAGGATCCAGAACCCAACCCTGTGGAGGAGTCTCCAGATCAAGAAACACGACATGGAGCTCAGGAACGGTCACCAGAAGAATGAGAAGAGGCTCTTCCATGGAACATGCCACACAACCATCAATCACATCAACAACCATGGCTTCAATCGGAGCTTTGCTGGGACAAATGGTACAGCATTTGGAAACGGCACCTACTTTGCTGTTGGTGCCAGCTACTCTGCCAGAAGCACATACTCAAGACCGGATCGCCAGGGGCAGAAGTATATGTACCTATGTCGAGTTCTGACTGGCGATTTCACAGCAGGACGACATGGGATGACAGTTCCTCCAGCTAAAAGCACCACGACTGTTGAACTCTACAACAGCGTGACAGACAACCCATCAGGACCATCTATGTTTGTCATTTTCCATGACAACCAGGCATATCCTGAGTACTTGATCACGTTCTTCTAGACCCTGCGGAGAAAAGCAAAAGAAATGAAATGCCCTTACTAAACTTTCAAAAGTCTTCCTTATGATTATGACTATGTGCCTTATCAACTGTTATACACAACTTTTATTGAAGAAATTAAAATGACTGATGTCACTTTTGCATGGAAAAGTCTAACCATTATAGGTTCTAATgtaactgatgttctgaatgagctgcaaaat

Function

NR:

description
uncharacterized protein LOC110538851

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625833.2 True 2198 mRNA 0.49 7 96498544 96505238

Neighbor

gene id symbol gene type direction distance location
LOC110516715 LOC103469064 coding downstream 62751 96392239 ~ 96435793 (-)
LOC118937802 fbxl16 coding downstream 132558 96314326 ~ 96365986 (-)
LOC118937801 NA coding downstream 185539 96209246 ~ 96313547 (-)
LOC110538778 NA coding downstream 501902 95995245 ~ 95996642 (-)
LOC118937923 NA coding downstream 503014 95995389 ~ 95995530 (-)
LOC110494398 clg11h16orf89 coding upstream 100136 96605374 ~ 96610119 (-)
eef2kmt fa86a coding upstream 128176 96633414 ~ 96637111 (-)
LOC110518479 LOC106591170 coding upstream 209052 96714290 ~ 96728931 (-)
LOC118937835 LOC106591170 coding upstream 223744 96728982 ~ 96753421 (-)
LOC110485334 LOC106596281 coding upstream 336373 96841611 ~ 96845185 (-)
G1130508 NA non-coding downstream 106363 96391576 ~ 96392181 (-)
G1130506 NA non-coding downstream 107525 96390623 ~ 96391019 (-)
G1130505 NA non-coding downstream 108243 96389587 ~ 96390301 (-)
G1130504 NA non-coding downstream 111410 96386061 ~ 96387134 (-)
G1130502 NA non-coding downstream 116173 96382145 ~ 96382371 (-)
G1130555 NA non-coding upstream 12963 96518201 ~ 96519223 (-)
G1130520 NA non-coding upstream 15631 96520869 ~ 96523946 (-)
G1130556 NA non-coding upstream 27414 96532652 ~ 96541692 (-)
G1130845 NA non-coding upstream 74392 96579630 ~ 96579987 (-)
G1130847 LOC106601992 non-coding upstream 77272 96582510 ~ 96583012 (-)
G1130145 NA other downstream 652261 95845107 ~ 95846283 (-)
G1130049 NA other downstream 872379 95625758 ~ 95626165 (-)
G1129951 NA other downstream 1104577 95392201 ~ 95393967 (-)
G1129544 NA other downstream 1405451 95092622 ~ 95093093 (-)
G1130893 NA other upstream 197169 96701694 ~ 96705588 (-)
LOC110487147 LOC106601974 other upstream 356905 96858442 ~ 96867462 (-)
LOC110519445 smg1 other upstream 470937 96898792 ~ 97043408 (-)
LOC110515892 syt17 other upstream 598252 97078111 ~ 97137134 (-)

Expression


Co-expression Network