LOC110494398 (clg11h16orf89)


Basic Information

Item Value
gene id LOC110494398
gene name clg11h16orf89
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96605374 ~ 96610119 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939373.1
GCACACATTGCATTAGCCTAATTTAATAAAACTGAATTCCCAGCTTCTCAATCGATCGAGCCACGTGACAGCTCGTTTTCGCCAAACAAGCACATCACTCTTGCAAATCACTCTTGCAAATCAGGTATATGCGCTGCGTCAACCGTTTGGGGTTTAGCCTAGGGCGGCTATTGCTAGACTTTTAGTAGCCTTATATCAGAACATGGCTAGGTTTGTGGTAGAGGTGTTTTTTGTCCTTGTTTTCTCCGCCACCAATGCGGCGCAGGAGGAGGTCATTGATGTGATTCTAGCCAGTCTCGCCAAAAGCGCATCGTTCCTGGAGCAAGAGCACCGTAACATCAACCTAGACGGAGTGGTCGGGTACATCATCCTGCAGGCGGAGTTGAAGGAAGCAGTGAGAGCGTGGCCCCACACTGACCCTCTGAGCTGGTCTCAGCGCACCGCTACGGTAACCCTGGTCAGGAGGTTGGACCAGAGCCTGGCTAAGGCTGTCACCGAGCTGGAGAAGACTGACCCCAAATACTACAGAGagtttGAGCCTCTGTTGAGCTGGACCTTCTGGTCAGTACCTCATGAGTGGAGCACCACAGATCCCTCTCTGGCCTACTCCTCCGGTCGAACCATGGAGTGTTACGATGAGACGCAGAGCGACAAGTGTATGACCCTGCTACTGGGaacatgGAAGAACAACGGGACTCCTTGCATCGTGACCAAGTCATGTCGTGACACAATGACGAGGTTTGGATGTCCTAACTACTCCCTCTCTCACCAGCTGCTCTACTTCATGCTGGGAGCCaatAGAGGTTGTTCTGCCATGTTGAAGGGGGACATGCGTACGTCGCGTGCTAACCTAACAGAGAGACAGTACCAGGGGATATTCTGCTCCAACATGCTGAAGGGAAACATGGACATCATACAGAATAACTTCACCGGGGAGACCCAGGACATCTTCATCGAAAACATACTGCTGTGTGGATTGGCTGGTTTCTCTGACTTTCTCAAAGTCGATTGGCTGCAGCACATTCTGAGGCTGCAGGATCAGGAAGTGGGATGTTTTACACAGCCCCACAGaagagtgaagaggagagagagaatgttgaaGGatGGTTGTTCCAGTCACATAACAGGCGTGTCAGTGAGCGCTCTGGGAGGATACCTCAACTACTACCTGACAGAGCAGGACATCACCAAGAGACCACTCACCTGAATGTCAACCACCCTTCACCTGGCTGTGTGACCCTTCACCTGAATGTGTGACCCTTCACCTGAATGCCAACCACCCTTCACCTGGCTGTGTGACCCTTCACCTGGATGTGTGACCCTTCACCTGGATGTGTGACCCTTCACCTGAATGTGTGACCCTTCACCTGGCTGTGTGACCCTTCACCTGGATGTGTGACCCTTCACCTGGATGTCAACCACCCTTCACCTGGCTGTGTGACCCTTCACCTGGATGTGTGACCCTTCACCTGAATGTCAACCACCCTTCACCTGGCTGTGTGACCCTTCACCTGGATCTGTGACCCTTCACCTGAATGTCAACCACCCTTCACCTGGCTGTGTGACCCTTCACCTGGATGTGTGACCCTTCACCTGAATGTCAACCACCCTTCACCTGGCTGTGTGACCCTTCACCTGGATGTGTGACCCTTCACCTGGATCTGTGACCCTTCACCTGAATGTCAACCACCCTTCACCTGGATGTGTGACCCTTCACCTGAATGTGTGACCCTTCACC

Function

NR:

description
UPF0764 protein C16orf89 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939373.1 True 1738 mRNA 0.52 7 96605374 96610119

Neighbor

gene id symbol gene type direction distance location
LOC110538851 LOC106601944 coding downstream 100136 96498544 ~ 96505238 (-)
LOC110516715 LOC103469064 coding downstream 169581 96392239 ~ 96435793 (-)
LOC118937802 fbxl16 coding downstream 239388 96314326 ~ 96365986 (-)
LOC118937801 NA coding downstream 292369 96209246 ~ 96313547 (-)
LOC110538778 NA coding downstream 608732 95995245 ~ 95996642 (-)
eef2kmt fa86a coding upstream 23295 96633414 ~ 96637111 (-)
LOC110518479 LOC106591170 coding upstream 104171 96714290 ~ 96728931 (-)
LOC118937835 LOC106591170 coding upstream 118863 96728982 ~ 96753421 (-)
LOC110485334 LOC106596281 coding upstream 231492 96841611 ~ 96845185 (-)
LOC110487147 LOC106601974 coding upstream 248323 96858442 ~ 96867462 (-)
G1130841 NA non-coding downstream 4510 96600337 ~ 96600864 (-)
G1130842 NA non-coding downstream 10986 96593806 ~ 96594388 (-)
G1130847 LOC106601992 non-coding downstream 22362 96582510 ~ 96583012 (-)
G1130845 NA non-coding downstream 25387 96579630 ~ 96579987 (-)
G1130556 NA non-coding downstream 63682 96532652 ~ 96541692 (-)
G1130860 NA non-coding upstream 15891 96626010 ~ 96632722 (-)
G1130866 NA non-coding upstream 31775 96641894 ~ 96642504 (-)
G1130870 NA non-coding upstream 52764 96662883 ~ 96663702 (-)
G1130872 NA non-coding upstream 54647 96664766 ~ 96913614 (-)
G1130145 NA other downstream 759091 95845107 ~ 95846283 (-)
G1130049 NA other downstream 979209 95625758 ~ 95626165 (-)
G1129951 NA other downstream 1211407 95392201 ~ 95393967 (-)
G1129544 NA other downstream 1512281 95092622 ~ 95093093 (-)
G1130893 NA other upstream 92288 96701694 ~ 96705588 (-)
LOC110519445 smg1 other upstream 366056 96898792 ~ 97043408 (-)
LOC110515892 syt17 other upstream 493371 97078111 ~ 97137134 (-)

Expression


Co-expression Network