LOC118937804 (LOC106591169)


Basic Information

Item Value
gene id LOC118937804
gene name LOC106591169
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96676774 ~ 96702725 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939383.1
CTTTTGCCCGTTTGCGTCACCGGTCACAGGCCAGTACCCAGTAGACCAGTACGATCAACATAGTCGAATCTGCCCCTTAATCTCAGTCACTTCCACACTCTCAATGTGTTGTTGACAGATTTTATGATTGATTTTTCTGATAGCCAATCGGATCATTCTGTGCGTATGTGTATCCAATCAGAGGCTGGTAAGGGCGGAGCGGGAACCTCGAGCACCAGACTGTGCAGTGCCTATCTGTCAACTACAGTGTGTTATCGCGAATATGATTGAGCGTGGAAGGAAAAAAACACATGTATAATTTCACAAACTGAGATTTTCAAATGATTTACCGCGGACTTGGACTAAAACCTTACATCTCAAAGTGTGCTTTGGACCCACGAGAAAATACGGCAAACTGCAAGTTCTGGATAGAACCAAGGCAAGGAAAAGGTCGGGAAGTTACGGATCTTTGTTGTCCGGACAAGAGAGAGGGGCCCGATTTCAGAGCAGCCAGTCTCGGGTGAAGTTAGCAAGCAATCGGTACCAAGGAAGCCAGCATCGTAAACCACTTAGGAAGAGGATAGTCCAGTTTTCGACAGcccCTATCCCCCCTTAGTCCCCCTCTGCCTccatcctctccactctcctcccccagTGTGTGAGGGTACAGATGTGAGGAAGGTAGGATGGGTACCCAGGGCAGCCCGGTGAAGAGTTATGACTACCTGTTGAAGTTCCTCTTGGTCGGGGACAGCGATGTGGGGAAAGGGGAGATACTAGACAGCCTACAGGATGGATCGGCAGAGTCTCCGTACGCGTACAGCAGTGgcATCGACTACAAGACCACCACTATTCTGCTGGATGGGAGGAGAGTGAAACTGGAGCTGTGggacaCGTCAGGACAGGGGAGGTTCTGCACCATCTTCAGGTCCTACTCCAGAGGGGCTCAGggAATCCTGCTGGTGTATGACATCGCAAACCGCTGGTCGTTTGAAGGCATCGACCGCTGGATACGAGAGATTGACGAGcATGCCCCGGGTGTACCTCGTATCCTGGTAGGCAACCGGCTCCACCTGGCGTTCAAGCGGCAGGTTCCTACGGAGCAGGCCCGGGCGTACGCGGAGAAGAACGGCATGACCTTCTTTGAGGTCAGCCCGCTCTGCAACTTCAACGTCATCGAGTCGTTCACAGAGCTGTCTCGCATCGTACTGATGAGGCACGGCATGGAGAAGTTCTGGAAGCCCAACAGAGtctTCACTCTCCAGGACCTGTGCTGCAGAGCGATTGTCTCCTGCACGCCCGTCCACCTGATCGACAAGCTGCCGTTGCCCGTGGCGATAAAGTCCCACCTCAAGTCCTTCTCTATGGCCAATGGGATGAACGCAGTGATGATGCACGGACGTTCCTATTCGCTGGCCAACGCGGCGGGCGGGTCTAAAGGGAACAGTCTGAAGCGTTCTAAATCTATCAAACCCCCCCAGAGCCCCCCACAGAACTGCACACGCAACAACTGTAAAATCTCCTAGTGATGGACCCtgtctggggggaggggggagactgACACCCTAAACACACTAAAACAGACCCTGTCCCTTCCACTGAGGAGAGGATGTGTAGAGCCTGTGGGGAGAACCAAGTCTGAGACATAACCTACACCCTGAAGGGAGGAGATACCCTGAAACAGACCTAGCAATTATCCCATACCCTAACCCTGGGGGAGGAGAAACCCTGGATGAGGAGGGTGATGAAACCTAGTgtaggaggagggaggtgaaacctagtggaggaggaggacggaGGTGTGTGTGCACAGACTTGAGGAAACCCGACCAGACATTTCTGGTCAACCCTCGTCCATAGGAGGGGTTGTGCTGGAGTTGTAATACATCCAGAATAGATCCAGAATACACCCAGAAAACACCCAGAATACATCCATCCACACCCAGAATACATCCATCCACACCCAGAATAGACCCAGAATACATCCACACTACATCCAGAATAGATCCACACAACCCTACTGAGTTATAGTGTTTTCCCCTCCTCTCGtcttcccccctttctctctctgttgatcaGAGTGTTGCCTCCTGCTGTCCCATGATTCATATGTTAAATAATAGATGTTCTCTTCATGGATCTCTGCctgctctccttccttcctctctccatctccctcactctgcctgctctccttccttcctctctccatctccctgactCTGCCtgctttctctgctctctctccctacatctccct
>XM_036939382.1
TTTTGCCCGTTTGCGTCACCGGTCACAGGCCAGTACCCAGTAGACCAGTACGATCAACATAGTCGAATCTGCCCCTTAATCTCAGTCACTTCCACACTCTCAATGTGTTGTTGACAGATTTTATGATTGATTTTTCTGATAGCCAATCGGATCATTCTGTGCGTATGTGTATCCAATCAGAGGCTGGTAAGGGCGGAGCGGGAACCTCGAGCACCAGACTGTGCAGTGCCTATCTGTCAACTACAGTGTGTTATCGCGAATATGATTGAGCGTGGAAGGAAAAAAACACATGTATAATTTCACAAACTGAGATTTTCAAATGATTTACCGCGGACTTGGACTAAAACCTTACATCTCAAAGTGTGCTTTGGACCCACGAGAAAATACGGCAAACTGCAAGTTCTGGATAGAACCAAGGCAAGGAAAAGGTCGGGAAGTTACGGATCTTTGTTGTCCGGACAAGAGAGAGGGGCCCGATTTCAGAGCAGCCAGTCTCGGGTGAAGTTAGCAAGCAATCGGTACCAAGGAAGCCAGCATCGTAAACCACTTAGGAAGAGGATAGTCCAGTTTTCGACAGGTGTTTGAAGCGCTAGCAGTCAGAGAAGTCGGTGGTTAAATAAATACCAGTTGTAAAACGGTGTTGAGGTTGGAAGATCAGGACTTCTGCTCGCAGCTTGCTTTCAGCAGTGACGTTATTTGGACCACCACTGGTACCCTGCCGAATTCCTGTCCAAGGGACGTTTTTGGTTTTGAGCAGCACACCGTACTTCCAACTGCTGCAAGCTGTTTAACCTGGAgggactttttattttttattgtgtcCACTGTTGCTGCATCATTCAGACTTGCCAAGCTACAATGGTGGTCAGGTGTTTTAACCTGTAGCAGCGCCTCAACTCCACCTCGACACACAACAGTGGGCCGTAGGGCTAATCAACAATTCTCAACTGGAGGACCACACAGACTCTTGACTCTTTTAACTTCTCTGCTGGAATAGACTGTAcctgtttctccccctctctccagcccCTATCCCCCCTTAGTCCCCCTCTGCCTccatcctctccactctcctcccccagTGTGTGAGGGTACAGATGTGAGGAAGGTAGGATGGGTACCCAGGGCAGCCCGGTGAAGAGTTATGACTACCTGTTGAAGTTCCTCTTGGTCGGGGACAGCGATGTGGGGAAAGGGGAGATACTAGACAGCCTACAGGATGGATCGGCAGAGTCTCCGTACGCGTACAGCAGTGgcATCGACTACAAGACCACCACTATTCTGCTGGATGGGAGGAGAGTGAAACTGGAGCTGTGggacaCGTCAGGACAGGGGAGGTTCTGCACCATCTTCAGGTCCTACTCCAGAGGGGCTCAGggAATCCTGCTGGTGTATGACATCGCAAACCGCTGGTCGTTTGAAGGCATCGACCGCTGGATACGAGAGATTGACGAGcATGCCCCGGGTGTACCTCGTATCCTGGTAGGCAACCGGCTCCACCTGGCGTTCAAGCGGCAGGTTCCTACGGAGCAGGCCCGGGCGTACGCGGAGAAGAACGGCATGACCTTCTTTGAGGTCAGCCCGCTCTGCAACTTCAACGTCATCGAGTCGTTCACAGAGCTGTCTCGCATCGTACTGATGAGGCACGGCATGGAGAAGTTCTGGAAGCCCAACAGAGtctTCACTCTCCAGGACCTGTGCTGCAGAGCGATTGTCTCCTGCACGCCCGTCCACCTGATCGACAAGCTGCCGTTGCCCGTGGCGATAAAGTCCCACCTCAAGTCCTTCTCTATGGCCAATGGGATGAACGCAGTGATGATGCACGGACGTTCCTATTCGCTGGCCAACGCGGCGGGCGGGTCTAAAGGGAACAGTCTGAAGCGTTCTAAATCTATCAAACCCCCCCAGAGCCCCCCACAGAACTGCACACGCAACAACTGTAAAATCTCCTAGTGATGGACCCtgtctggggggaggggggagactgACACCCTAAACACACTAAAACAGACCCTGTCCCTTCCACTGAGGAGAGGATGTGTAGAGCCTGTGGGGAGAACCAAGTCTGAGACATAACCTACACCCTGAAGGGAGGAGATACCCTGAAACAGACCTAGCAATTATCCCATACCCTAACCCTGGGGGAGGAGAAACCCTGGATGAGGAGGGTGATGAAACCTAGTgtaggaggagggaggtgaaacctagtggaggaggaggacggaGGTGTGTGTGCACAGACTTGAGGAAACCCGACCAGACATTTCTGGTCAACCCTCGTCCATAGGAGGGGTTGTGCTGGAGTTGTAATACATCCAGAATAGATCCAGAATACACCCAGAAAACACCCAGAATACATCCATCCACACCCAGAATACATCCATCCACACCCAGAATAGACCCAGAATACATCCACACTACATCCAGAATAGATCCACACAACCCTACTGAGTTATAGTGTTTTCCCCTCCTCTCGtcttcccccctttctctctctgttgatcaGAGTGTTGCCTCCTGCTGTCCCATGATTCATATGTTAAATAATAGATGTTCTCTTCATGGATCTCTGCctgctctccttccttcctctctccatctccctcactctgcctgctctccttccttcctctctccatctccctgactCTGCCtgctttctctgctctctctccctacatctccct
>TU1286316
ccactctcctcccccagTGTGTGAGGGTACAGATGTGAGGAAGGTAGGATGGGTACCCAGGGCAGCCCGGTGAAGAGTTATGACTACCTGTTGAAGTTCCTCTTGGTCGGGGACAGCGATGTGGGGAAAGGGGAGATACTAGACAGCCTACAGGATGGATCGGCAGAGTCTCCGTACGCGTACAGCAGTGgcATCGACTACAAGACCACCACTATTCTGCTGGATGGGAGGAGAGTGAAACTGGAGCTGTGggacaCGTCAGGACAGGGGAGGTTCTGCACCATCTTCAGGTCCTACTCCAGAGGGGCTCAGggAATCCTGCTGGTGTATGACATCGCAAACCGCTGGTCGTTTGAAGGCATCGACCGCTGGATACGAGAGATTGACGAGcATGCCCCGGGTGTACCTCGTATCCTGGTAGGCAACCGGCTCCACCTGGCGTTCAAGCGGCAGGTTCCTACGGAGCAGGCCCGGGCGTACGCGGAGAAGAACGGCATGACCTTCTTTGAGGTCAGCCCGCTCTGCAACTTCAACGTCATCGAGTCGTTCACAGAGCTGTCTCGCATCGTACTGATGAGGCACGGCATGGAGAAGTTCTGGAAGCCCAACAGAGtctTCACTCTCCAGGACCTGTGCTGCAGAGCGATTGTCTCCTGCACGCCCGTCCACCTGATCGACAAGCTGCCGTTGCCCGTGGCGATAAAGTCCCACCTCAAGTCCTTCTCTATGGCCAATGGGATGAACGCAGTGATGATGCACGGACGTTCCTATTCGCTGGCCAACGCGGCGGGCGGGTCTAAAGGGAACAGTCTGAAGCGTTCTAAATCTATCAAA

Function

NR:

description
PREDICTED: ras-related protein Rab-40C

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939383.1 False 2239 mRNA 0.52 7 96676774 96702725
XM_036939382.1 False 2687 mRNA 0.52 7 96676775 96702725
TU1286316 True 834 TUCP 0.57 6 96678532 96701937

Neighbor

gene id symbol gene type direction distance location
LOC110494408 NA coding upstream 4149 96671465 ~ 96672625 (+)
LOC110494405 pigq coding upstream 6328 96637198 ~ 96670446 (+)
LOC110512418 alg1 coding upstream 43435 96618239 ~ 96633339 (+)
LOC118937803 NA coding upstream 46175 96627108 ~ 96630599 (+)
LOC110517345 LOC106596483 coding upstream 82606 96542870 ~ 96594168 (+)
LOC110485332 LOC105030590 coding downstream 65666 96768391 ~ 96838680 (+)
LOC118937805 LOC106601973 coding downstream 167197 96869922 ~ 96872737 (+)
LOC118937806 clec19a coding downstream 352116 97054841 ~ 97069129 (+)
LOC110539044 mrp1 coding downstream 537333 97240058 ~ 97298946 (+)
LOC110539053 LOC106601961 coding downstream 815615 97518340 ~ 97526372 (+)
G1130589 NA non-coding upstream 21048 96654343 ~ 96655726 (+)
G1130577 NA non-coding upstream 69676 96606799 ~ 96607098 (+)
G1130575 NA non-coding upstream 70690 96603948 ~ 96606084 (+)
G1130604 NA non-coding downstream 3953 96706678 ~ 96707052 (+)
G1130611 NA non-coding downstream 25120 96727845 ~ 96728202 (+)
G1130629 NA non-coding downstream 77184 96779909 ~ 96865354 (+)
G1130641 NA non-coding downstream 132007 96834732 ~ 96835297 (+)
G1130642 NA non-coding downstream 140246 96842971 ~ 96845964 (+)
G1130570 alg1 other upstream 43322 96618256 ~ 96633452 (+)
LOC110538761 LOC106606716 other upstream 1046199 95629494 ~ 95815227 (+)
G1129772 NA other upstream 1157132 95519178 ~ 95519642 (+)
G1129613 LOC106601744 other upstream 1367077 95300784 ~ 95309697 (+)
G1129601 LOC106601741 other upstream 1409718 95266518 ~ 95267056 (+)
G1130780 LOC106606334 other downstream 459537 97162262 ~ 97163079 (+)
G1131438 NA other downstream 1117999 97820724 ~ 97822057 (+)
LOC118936514 smim22 other downstream 1557284 98259570 ~ 98268855 (+)
G1132060 NA other downstream 2022132 98724857 ~ 98725197 (+)
G1132058 NA other downstream 2061234 98762440 ~ 98767257 (+)

Expression


Co-expression Network