LOC110487147 (LOC106601974)


Basic Information

Item Value
gene id LOC110487147
gene name LOC106601974
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 96858442 ~ 96867462 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939386.1
TTAGGATGTAGTCTAAACCTTAAAGAAGAAGAAGCCCATAGACGACAGTCTCAAGATAAATGTTTCTTGAAAATGTCGAAACCACAGTTGTTGACTGTGTTTATAGCCAAGCGATTAATATCGGCAGCCGTGAACATATTTGGGATAGAGGAAAGGTGGATAGCTCAGTACCAGGAGCCACTAGCAGCAGTGACTGTTGAGATAATGGCGGCGGTGGAAACGACGATAGAACAAGAGCTCTCCAGTTCAAAGCAGGAGATTGAACGTCTACGGAGGCTTCTTCTGGAGTTGGGAGCAGaCCCCCAGCAGCTAACTGTCCCTGAAGAGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGCAGGACACAGAGCCCTcacagattaaagaggaacaggaggaactcaGGACGAGTCAGGAGGAAATCAGTGTACCTTTTTCCTGCCTGGGTATATGACAGACAGCTGTTGGTCAGAGCACTTCTCTGGAGccggaagaggaggaggagcgtGTGTCAATCCTATAGTAGGACTCAATGCGGCCAGCAGGTCAAACGAACAACTAAAATGAACGAGTCACTCAGAAAAACGAGTCCGTAAAATGAGTCGttcacaaataaaataaaaaatgtgcaaCCTGA
>XM_021559072.2
TTTAGGATGTAGTCTAAACCTTAAAGAAGAAGAAGCCCATAGACGACAGTCTCAAGATAAATGTTTCTTGAAAATGTCGAAACCACAGTTGTTGACTGTGTTTATAGCCAAGCGATTAATATCGGCAGCCGTGAACATATTTGGGATAGAGGAAAGGTGGATAGCTCAGTACCAGGAGCCACTAGCAGCAGTGACTGTTGAGATAATGGCGGCGGTGGAAACGACGATAGAACAAGAGCTCTCCAGTTCAAAGCAGGAGATTGAACGTCTACGGAGGCTTCTTCTGGAGTTGGGAGCAGaCCCCCAGCAGCTAACTGTCCCTGAAGAGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGCAGGACACAGAGCCCTcacagattaaagaggaacaggaggaactcaGGACGAGTCAGGAGGAAATCAGTACGagtcaggaggaagagcagcttcatAGACTTGAGTCTGATTCCACAGATGTTGTAGAGTTCATATTTACTGCTCCTCCCTGTGTGGAAAAGTACTCTgatcaggacagagagagagagagggactctcTACCCACCAACACAACTGAACAGATCCAAACAGAACCTAATGGAGAGGACTACAGAGTATCAGAACCAACCAGTgactctctgctcctctctgcagTAAATCCAGACTGTTCGGCAGCTCACAGTGAAATCATTGTAAGTGTGGATGAGGATGAGAGCGAGGAGCCTGTGTCAAAGACCCTCAAATCAAGGAGGGCACAGGCAGAGACAGGACAAAGCTCTCAAGTCCGCACTGAGGCCGAGAAAACCAGTGAGCTGAAAGAACCGTTGAAGTCTCACACAAATAGGAAGCCGTTCAAATGTCCTGCGTGCGGTAAACGCTATAAGACACGAGGCGGTTTAAAAACGCATCAGAGAATTCACTCAACTGAAAATAATCATCACTGCAAGAAATGTGGCCAATCGTTTAACTTGTTGCAACAATGGAAGAAACATATGAAGAATCACACAGACGAGGAATCGCCTACGTGCCACGTGTGCAGTAAACGTTTTAAACTGCCAAACCATCTGAAAACTCATATGAGATGCCACAGCGTAGAGAAATCCAGTCAGTGTCCGACATGTGGAAAACACTTTAAATCAGGGAAAGACCTAAAGAAACATCAGAGAATTCACACTGAAGATCAACGATACCAGTGTCCGACATGTGGAAAACACTTTAAATCAAAGTACAACCTTAAACAACACAAGAAAATTCACACCGACGAGAAATCGTATCGCTGCAATGATTGTGTCAAGTGCTACAGGACAAAGACGGGCTTAGAAGAGCACGTGAGgactcacacaggggagaaacctttTAAGTGTTCCGTGTGTGAAAAGTGCTTTACTTCAACAACCATTCTAAAACGCCACGAGAGAACTCACAGTGGAGAGAAACCACACTGCTGCACACAATGCAACAAACGCTTCCCTGTCAAGTCAGACCTGGTTAAACACATGAGAacgcacacaggggagaaacctttTAGCTGTAGCGAATGTGACAGATGTTTCAGTCATAACATTAGCCTGAGACTGCACATGAGAACTCACACAGGGGTGAAACCGTACAGCTGCGAAGAATGTGGCAAATGTTTTTCTGTTAACAGTAACCTGAGAATGCACATGaaaattcacacaggagagaaatcgtTTTGTTGCCAGGAATGCGGTAAATGTTTCCGTCATAAAATTAGCCTGAGACTGCATATGATGACTCACAGTGGTGGAGAGAATCTTCACGGATGTACTCAATGCAACAAATGTTTCCCCATCAAATCTCTCCTGGTTAAACACACGATGacgcacacaggggagaaatctAATAGCTGCAAAGAATGTAGCAAATGTTTCAGTCATAACATTAGCCTGAGACTGCACATGAGaatgcacacaggggagaaatcatATACCTGCAAAGCGTGTGGCAAATGTTTCCAAAACAAGACGGTTCTGACGAGGCATATGAGAACTCACAAAGGAGAGAATCCATATAAGTGTCCCCTTTGTGTCAGTTCCCTTATGTCATCAAATGAACTAAAACATCTTTACTTGGGAGAGAAACCAGAGACCGACCAACCAGAGAATCCATCGTGCCTCTGCAGCGATTGTGGCAAACGCTTCCCAACGACGAAAACCCTGAGAGACCACATGAGGACCACACATGAAGAAAGAAGGCATTCGTGCTCTGTTTGTGGAGATTTCTTTATGTCGTTGGGTTCTCTTAAAGTTCACCAGAaaattcacactggagagaaaccccACCAGTGTTCTGTTTGTGGGAAATATTTTGCATTGTAGTGATGGGAAGTTTGGCTCTTTTTACAGACTGATCTTTGactcatttaaataaataaaaaaaactcctcTTTCGACTAA
>TU1286930
TAGACGACAGTCTCAAGATAAATGTTTCTTGAAAATGTCGAAACCACAGTTGTTGACTGTGTTTATAGCCAAGCGATTAATATCGGCAGCCGTGAACATATTTGGGATAGAGGAAAGGTGGATAGCTCAGTACCAGGAGCCACTAGCAGCAGTGACTGTTGAGATAATGGCGGCGGTGGAAACGACGATAGAACAAGAGCTCTCCAGTTCAAAGCAGGAGATTGAACGTCTACGGAGGCTTCTTCTGGAGTTGGGAGCAGaCCCCCAGCAGCTAACTGTCCCTGAAGAGGAGGTTCCCCCTGAGCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGCAGGACACAGAGCCCTcacagattaaagaggaaca

Function

NR:

description
uncharacterized protein LOC110487147, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939386.1 False 663 mRNA 0.48 3 96858442 96867461
XM_021559072.2 False 2443 mRNA 0.45 2 96860120 96867462
TU1286930 True 381 TUCP 0.51 2 96862143 96867423

Neighbor

gene id symbol gene type direction distance location
LOC110485334 LOC106596281 coding downstream 13257 96841611 ~ 96845185 (-)
LOC118937835 LOC106591170 coding downstream 105021 96728982 ~ 96753421 (-)
LOC110518479 LOC106591170 coding downstream 129511 96714290 ~ 96728931 (-)
eef2kmt fa86a coding downstream 221331 96633414 ~ 96637111 (-)
LOC110494398 clg11h16orf89 coding downstream 248323 96605374 ~ 96610119 (-)
LOC110487148 ar6p1 coding upstream 7322 96874784 ~ 96897190 (-)
LOC110519445 smg1 coding upstream 31330 96898792 ~ 97043408 (-)
LOC110515892 syt17 coding upstream 210649 97078111 ~ 97137134 (-)
LOC110538850 LOC106606334 coding upstream 284856 97152318 ~ 97158050 (-)
LOC118936515 LOC106606334 coding upstream 290556 97158018 ~ 97163137 (-)
G1130905 NA non-coding downstream 126598 96730980 ~ 96731844 (-)
G1130897 NA non-coding downstream 146467 96711626 ~ 96711975 (-)
G1130893 NA non-coding downstream 152854 96701694 ~ 96705588 (-)
G1130885 NA non-coding downstream 169256 96685302 ~ 96689186 (-)
G1130877 NA non-coding downstream 185823 96671890 ~ 96672619 (-)
G1130962 NA non-coding upstream 40149 96907611 ~ 96908372 (-)
G1130967 NA non-coding upstream 55972 96923434 ~ 96923957 (-)
G1130970 NA non-coding upstream 73179 96940641 ~ 97020117 (-)
G1130973 NA non-coding upstream 111572 96979034 ~ 96980067 (-)
LOC110516715 LOC103469064 other downstream 423092 96392239 ~ 96435793 (-)
G1130145 NA other downstream 1012159 95845107 ~ 95846283 (-)
G1130049 NA other downstream 1232277 95625758 ~ 95626165 (-)
G1131229 LOC106601922 other upstream 511086 97378548 ~ 97416568 (-)
G1131230 LOC106601922 other upstream 515638 97383100 ~ 97424120 (-)

Expression


Co-expression Network