LOC110515892 (syt17)


Basic Information

Item Value
gene id LOC110515892
gene name syt17
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97078111 ~ 97137134 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939397.1
ctgttgttgttgttgtttggtgAGAGGGGGGTGatgatggagaggtagtgagaatGAAGAAGAGTAACCTGGTTAACCCTTCACTCTTGTCACCTTGAGATTTTATATCTCTTCTTTTCCACTCCTCTTTTTTCCTGGGTGAAAGTGGAtgttggatggagggatgaggaacTGGATGAAGGGaagtgaggaagagaagagagactgaggagacaaTGTCGTACACACAGTTGGAACCCATCAACAAGggtgTGCTGGCCAGGCTAACTGACTGTCTATTGTGTCGGTGGTCGTGTCGCTCATGTCTGTTGTGGTGTTGGGAGTGCTGCTTTCCGTCCAGTGATGAGGAGGTGGAGATACTGGGACCCTTCCCTGCTCAGACCCCCTCCTGGCtaGTGAACGAGTGTGTGGATGAGAAGGACACTGATACCGGGGTCACTCATGTTGACTCCATGGCAATAACGCAGGACAGAATTCCGACCCGGAGACGTTCCAGCTCAGAGATGTCCCGATCCACCTTCAGCCTGGTCCGACAACTCTCCAgtCTTGACGCCCGCAGGCCCAGCTCTCCGCTGGTTGAGGTGAAACCCATTGAGTTCTGGGCCATGGGCCCCAGGAAGGAGGTGATCCAGCCGCTGCGTCGACCCCAGCCCCCTCCGGATGACTACTTCAGGAAGTTGGAGCCACGCCTCTACTCTCTGGACTCATCCGGAGACGACGTGGACTCGCTAACGGACGAGGAGATCCTGCTACGATACCAACTGGGCATGCTTCACTTCAGCACACAgtatGACCTAATCAACAGCCACCTGGGCGTTAGGGTCATTGAGGCTCGCGACCTGCCCCCACCGCTGACCTGTGATGGAGCCCGCCAGGACATGGCCCACTCCAACCCATACGTCAAGATCAGCCTGCTGCCGGACCACAAGAACTCccggcagACGGGGGTGAAGAGGAAGACACAGAACCCGGTGTTCGAGGAGCGGTTCACCTTCGACCTTCTGTTCCTGGAGGCCCAGCGCCGCACCCTGCTGCTGTCTGTGGTCGACTTCGACAAGTTCTCACGGCACTGTGTCATCGGCAAGGTGGCGCTGCCTCTGAGTGAGGTTGATCTGGTGAAAGGTGGTCATTGGTGGAAGGCCCTGGTACCTAGTTCTCAGAAtgaggtagagctgggagagctGCTGTTATCACTCAACTACCTGCCCTCTGCTGGAAGACTCAACGTTGACATCATCAGAGCGAAGCAGCTGCTGCAGACAGACATGTGCCAGGGATCAGACCCGTTTGTGAAGGTTCAGCTGGTAACAGGGCTGAAGCTGGTAAAGACCAAGAAGACTTCCTGTATGAAAGGAACCATCGACCCCTTCTACAATGAGTCATTCAGCTTCAGAGTCCCCCACGAAGACCTCAGCGAAGTCAGCCTGGTATTTACAGtGTACGGCCACAACATGAAGAGCAGTAATGATTTTGTGGGGAGGATCGTGATTGGCCAGTTCTCCACGGGTCCTCCTGAGACCTCCCACTGGCGCCACCTGTTGGCCAGTCAGAGAACTCCGGTGGAACAGTGGCACAGCCTGCGGTCACGGGCAGAGTGTGACCGCGTCTCACCTGCCTCGCTGGAGGTCACATGATAGAGCTGGAGAGGGATCAGGAGTTAGAAGTTAGGGGTTAGATGTCAGGAGGAGAGGTATAAGCTCAAAGTGTTGAGGTACACAGTAGGAAAGGGGGTCAggagttagaggttagaggtcggGGGTTTGATGTCAGGGAGGTGAGAAAAGGGGgttagaggatgagagagagagagagagagggacaccgagagagggacacagagagagggacacagagagacccagagataaggacacagagagagaagagagagggacacagagagagggacacagagagagaagagagagggacacagagagagagggagagaaggaaggggagacAGAGGTCAGGGTTAAGGCCACCAGCAGGCCGGATTAAGAAATCATAGGCCGTGGCTTAGACATTGCTCAAATTTTAATAGTAAAGACGTAATTTaactgtaaaaatatatatttgtctcAGCCCCGGGCCTACGGTTGGAGGATCCAGTAAAAAatcaaatatatatacatttctaTTTTTCAGGCCCTGCATTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCATTAATCAGGCCCTGCATTTAATCAGGCCCTGCGTTAATCAAGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCATTTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCATTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCATTAATCAGGCCCTGCGTTAATCAGCCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGCCCCTGCGTTAATCAGGCCCTGCATTAATCAGGCCCTGCATTTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCATTTAATCAGGCCCTGCATTAATCAGGCCCTGCGTTAATCAGGCCCTACGTTAATCAGGCCCTGCATTTAATCAGGCCCTGCGTTAATCAGGCCCTGCATTAATCAGGCCCTGCATTAATCAGGCCCTGCGTTAATCAGGCCCTGCATTAATCAGCCCCTGCATTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCATTAATCAGGCCCTGCATTTATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCATTTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCGTTAATCAGGCCCTGCATTTATCAGGCCCTGCATTAATCAGGCCCTGCCAACAAGATGAACCGTCCTCAGCTCTCCAAAATTGCTgcctctcttccccctcacctTCCTGACTGACCTCCCAATCCCCTAGCAGTGTGACCagagactgtgtcccaaatggcaccctattccctatatagtgcactactttagactatgggccgtattccctatatagtgcactactttagactatgGGCCCCTCCTCCCTATGGGCCCCACCTCCCTAT
>TU1286954
GCAGGCCCAGCTCTCCGCTGGTTGAGGTGAAACCCATTGAGTTCTGGGCCATGGGCCCCAGGAAGGAGGTGATCCAGCCGCTGCGTCGACCCCAGCCCCCTCCGGATGACTACTTCAGGAAGTTGGAGCCACGCCTCTACTCTCTGGACTCATCCGGAGACGACGTGGACTCGCTAACGGACGAGGAGATCCTGCTACGATACCAACTGGGCATGCTTCACTTCAGCACACAgtatGACCTAATCAACAGCCACCTGGGCGTTAGGGTCATTGAGGCTCGCGACCTGCCCCCACCGCTGACCTGTGATGGAGCCCGCCAGGACATGGCCCACTCCAACCCATACGTCAAGATCAGCCTGCTGCCGGACCACAAGAACTCccggcagACGGGGGTGAAGAGGAAGACACAGAACCCGGTGTTCGAGGAGCGGTTCACCTTCGACCTTCTGTTCCT

Function

symbol description
syt17 Predicted to act upstream of or within exocytosis. Predicted to be located in membrane. Orthologous to human SYT17 (synaptotagmin 17).

NR:

description
PREDICTED: synaptotagmin-17-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939397.1 False 3279 mRNA 0.53 11 97078111 97137134
TU1286954 True 454 TUCP 0.60 3 97103490 97106756

Neighbor

gene id symbol gene type direction distance location
LOC110519445 smg1 coding downstream 34703 96898792 ~ 97043408 (-)
LOC110487148 ar6p1 coding downstream 180921 96874784 ~ 96897190 (-)
LOC110487147 LOC106601974 coding downstream 210649 96858442 ~ 96867462 (-)
LOC110485334 LOC106596281 coding downstream 232926 96841611 ~ 96845185 (-)
LOC118937835 LOC106591170 coding downstream 324690 96728982 ~ 96753421 (-)
LOC110538850 LOC106606334 coding upstream 15184 97152318 ~ 97158050 (-)
LOC118936515 LOC106606334 coding upstream 20884 97158018 ~ 97163137 (-)
LOC118937807 NA coding upstream 169445 97306579 ~ 97320822 (-)
LOC110539048 LOC106602018 coding upstream 211000 97348134 ~ 97355956 (-)
LOC110538791 LOC106601922 coding upstream 241205 97378339 ~ 97386199 (-)
G1130991 NA non-coding downstream 6086 97071632 ~ 97072025 (-)
G1130983 NA non-coding downstream 30484 97047305 ~ 97047627 (-)
G1130981 NA non-coding downstream 51011 97026692 ~ 97027100 (-)
G1130970 NA non-coding downstream 57994 96940641 ~ 97020117 (-)
G1130977 NA non-coding downstream 80141 96997635 ~ 96997970 (-)
G1131009 NA non-coding upstream 1555 97138689 ~ 97138920 (-)
G1131016 NA non-coding upstream 6885 97144019 ~ 97145512 (-)
G1131017 NA non-coding upstream 8587 97145721 ~ 97146176 (-)
G1131021 NA non-coding upstream 22610 97159744 ~ 97160488 (-)
G1131041 NA non-coding upstream 52150 97189284 ~ 97189931 (-)
LOC110518479 LOC106591170 other downstream 362476 96714290 ~ 96728931 (-)
G1130893 NA other downstream 372523 96701694 ~ 96705588 (-)
LOC110516715 LOC103469064 other downstream 642761 96392239 ~ 96435793 (-)
G1131229 LOC106601922 other upstream 241414 97378548 ~ 97416568 (-)
G1131230 LOC106601922 other upstream 245966 97383100 ~ 97424120 (-)
G1131255 NA other upstream 292951 97430085 ~ 97433418 (-)
G1131270 NA other upstream 324679 97461813 ~ 97462271 (-)
G1131003 NA non-coding downstream 405 97102370 ~ 97103085 (-)
G1131001 NA non-coding downstream 6180 97097111 ~ 97097310 (-)
G1131000 NA non-coding downstream 7109 97095891 ~ 97096381 (-)
G1130997 NA non-coding downstream 12034 97090961 ~ 97091456 (-)
G1131004 NA non-coding upstream 44 97106800 ~ 97107213 (-)
G1131007 NA non-coding upstream 14424 97121180 ~ 97121478 (-)

Expression


Co-expression Network