LOC110538791 (LOC106601922)


Basic Information

Item Value
gene id LOC110538791
gene name LOC106601922
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97378339 ~ 97386199 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021625768.2
ATGGCCATATCTGTGAAAGAGCGACTCCTGGCCGTTCTGGAGGATCTCGGCTCTGACGAGCTGAAGAGATTTAAGTGGCATCTAACTACAGGAATCCAGCTGGATGGCTTCCCTCGCATTCCAAAGGGCCAGCTGGAGACATCTGACGGACTGGACATAGTGGATCAGATGGTGCAGAAATACAGGGGGAATGTGGCTGTGCAGATCACACTGATAATCCTGAAGAAGATTAGCCGCAACGATCTCACTGAGAAGCTAAACAGAGACTGTCCAATAGGTCCTTCAGATGAAGATGGTGAGAAGTTCCAACATGAATATAAACTGGAAGTAAAAAATAAGTTTCAGCATGTTTTCAACGGGGTACCAAAGCAGGGCCATAAACGACTTCTCAATGagatctacacagagctctacatcacagagggtggaaGTGGAGAGGTCAATCAGGAACATGAGGTGAGACAGAACGAGATCACGTCCAAGAATCCAGCAAGACCAGAGGCTAAAATCCTCTGCAATGACATCTTCAAACAATCCTCTGGACAAGACAAACCtatcagaactgtgctgacaaaaggagtcgctggcattggaaaaacagttTGTGTGCAGAAGTTCATTCTGGATTGGGCTGAAGGGAAAGCCAATCAGGATGTCCAATTCGTAATTTCACTCCCTTTTCGGGAGCTGAATTTGGTGAGGGGGGAAAAGTACAGTTTTGTAGAACTTCTACATACATGTGTCTTAGAGACTGGAGTGATTGAGAGAGACTTTTTGAATCACATTTTAACAAAATTGCAAAAACCAGGAAACCACAATGAGAGCAAGTACAAAGTTATATTTGTCcttgatggtctggatgagtgccGACTGACCCTCGACTACGAGACCGGTAAGAGCTGGTGCGATGTCACAGAGCCAACCTCAGTGGACGTGCTGCTGACAAACCTCATCAAGGGAaatctgcttccctctgctctcctctggataacCTCCAGACCTGCAGCAACCAATCACATCCCTCCTGAgtgtgttgaccaggtgacagaggtacgagggttcgatgacccacagaaggaggagtacttcaggaagacattcagtgatgaggacctggccaacagaatcatctcacacataaagacatcaaggagcctccacatcatgtgccacattccagtcttctgttggatctTAGCTGCAGTTCTGGAGCATGTGTTGAGTTCAGATAAGAATGAAGAGATGCCCAAGACTCTGACTCAATTATTTATTGGGTTACTGATATTTCAGACCAAACAGATGAATGATAAATATCACAAGAAAGGTGAGCGAGATCCACGCAGGGATAAAGAGAGCTTCATGGCACTGGGGAAACTTGCTTTTAACCAGCTGGAAAATGGCAACCTCATTTTCTATGAGGCAGACCTGAAAAAGTATGGCATTGATGTCACTGAAGCCTCAGTGAACTCAGGAGTGTGCACGCAGCTCTTTAGACAGGACTATGGGCCGTTCCAGGACAAGGTGTACTGCTTTGTGCATCTGAGCGGTCAGGAGTTTCTTGCTGCGTTATACGTTTTCCTCTCCTTCAACAACAGCAATGTCAACCCGATGACCGAAGACCAATCCTTCATCAGAAAATGTCTCGTGAAGTTGAATCCTGCCATCACTTTCCACACGATTGCAGTGGATAAAGCCTTACAGAGTGAGAATGGACACCTGGACCTgttcctccgcttccttctgggcctctcactggagtccaatcagacTCACTTACACGGCCTACTGACACAGACAAGAAGCACCAGAAGCAGCTCACGGGGCCATGAGGAAACAGTCAAGTACATCAAGAAGAAGATCAGGAACACTCCATCTTCAGAGAGGTgcatcaatctgttccactgcctgaatgaactgaatgaccattctctagtggaggagatccaaAGATACCTGCATTCAGGAAATCTGTCCAAAACCAACCTGTCACCtgcacagtggtcagctctggtctttgtgttgctgacttcagaagaggagctggatgtgtttgacctgaagaaatactccagatcagaggaaggtcttCTGAGGCTGCTGCCAGTGGTCAAAGCCTCCAGAACTGTTCTGCTTAATGGGTGTAACCTCACTGAGAAATGCTGTGAAGCCTTGGCCTCAGCTTTCAACTCAACCTCCTCaaacctgagagagctggacctgagtgacaacaacctgcaggattcaggagtgaagctgctctctgctggactggagaatccccactgtaaactggagacactgagGTTGTCACGCTGTCTGATCACAAAgaaaggctgtgcttctctggcctCAGCTCTGAGGTCCAACCCCTCctacctgagagagctggacctgagctacaatATCCCAGGAGACTCAGGAGTGAAGCAGCTCTCTGCTGGACTAGAGGATCCACACTGGagactggagaaactcaaTGTTGACCACCGTGGAGAGTACTGGCTGCTGAAAAAATATgcctgtgatgtcacactggaCCCGAACACAGCATGCAGacacctctctctgtcagagGGGAACAGGAAGGTGACACGGGGGAAAGAGGAGCAGCCGTATCCTGATCGCCCAGGGAGATTTGAGTTCTGGCCacaggtgctgtgtagagagggtctgactgggcgctgttactgggaggcAGAGATGAGTGGGGGAGGGGATGACATAGGAATGACGTACAGAGGAATCGGCAGGACAGGAAACGCCGATGACAGTAAGCTTGGATGCAATGACAAGTCCTGGAGTCTGAGCTGCTCTGATTACGGTTACACTGCCAGGCACAATAAGGAGAGAACTGACTTACCTGCCTCCTCCTCGTCCaacagagtaggagtgtatctggactggccggccggcactctgtccttctacactctgtcctcctctgacacactcactcacctaCACACATTCCGCTCCACATTCACTGAGCctctctatccagggttttgggttgaAATAAACTCCTCATTGTCCCTATGTGAGGTCAAAAACCTTTAGGTGGTAAACGATGGATCTTGTTGTTATTGATCGTTGTTTGTAAATAATGTTTATTTAGTCAAATGGTTGACATTGCAATCCTGATTCTGTTTGAAGTCAATAACACTGAATGGACCTTTCCCGGTACACATTCGGCCAGATAAAGACAAATAAAACTGGTTGTTTTAAAAAACtgttaaa

Function

NR:

description
NACHT, LRR and PYD domains-containing protein 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021625768.2 True 3237 mRNA 0.48 6 97378339 97386199

Neighbor

gene id symbol gene type direction distance location
LOC110539048 LOC106602018 coding downstream 22383 97348134 ~ 97355956 (-)
LOC118937807 NA coding downstream 57517 97306579 ~ 97320822 (-)
LOC118936515 LOC106606334 coding downstream 215202 97158018 ~ 97163137 (-)
LOC110538850 LOC106606334 coding downstream 220289 97152318 ~ 97158050 (-)
LOC110515892 syt17 coding downstream 241205 97078111 ~ 97137134 (-)
LOC110539046 LOC106596079 coding upstream 8429 97394628 ~ 97399459 (-)
LOC118937808 LOC106601922 coding upstream 28373 97414572 ~ 97424333 (-)
LOC118937836 NA coding upstream 57786 97443985 ~ 97447215 (-)
LOC110538797 abcc1 coding upstream 64329 97450528 ~ 97509183 (-)
LOC110538805 LOC106592410 coding upstream 141939 97527207 ~ 97574077 (-)
G1131208 NA non-coding downstream 24710 97309060 ~ 97353629 (-)
G1131205 NA non-coding downstream 59253 97314602 ~ 97319086 (-)
G1131083 NA non-coding downstream 87521 97286761 ~ 97290818 (-)
G1131047 NA non-coding downstream 173969 97203878 ~ 97204370 (-)
G1131043 NA non-coding downstream 186635 97190663 ~ 97191704 (-)
G1131234 NA non-coding upstream 2684 97388883 ~ 97427203 (-)
G1131254 NA non-coding upstream 42632 97428831 ~ 97429199 (-)
G1131256 NA non-coding upstream 48158 97434357 ~ 97439794 (-)
G1131266 NA non-coding upstream 65565 97451764 ~ 97452113 (-)
G1131273 NA non-coding upstream 81817 97468016 ~ 97468635 (-)
LOC110519445 smg1 other downstream 396399 96898792 ~ 97043408 (-)
LOC110487147 LOC106601974 other downstream 510916 96858442 ~ 96867462 (-)
LOC110518479 LOC106591170 other downstream 662704 96714290 ~ 96728931 (-)
G1131255 NA other upstream 43886 97430085 ~ 97433418 (-)
G1131270 NA other upstream 75614 97461813 ~ 97462271 (-)
G1131656 NA other upstream 326435 97712634 ~ 97713116 (-)
LOC110538882 LOC106601977 other upstream 392456 97764189 ~ 97787224 (-)

Expression


Co-expression Network