LOC118937808 (LOC106601922)


Basic Information

Item Value
gene id LOC118937808
gene name LOC106601922
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97414572 ~ 97424333 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939405.1
GCTCCACTGACCTACAATGGCCATATCTGTGAAAGAGCGTCTCCTGGCCGTTCTGGAGGATCTCGGCTCTGACGAGCTGAAGAGATTTAAGTGGCATCTAACTACAGAAAACCAGCTGGATGGCTTCCTTCCCATTCCAAAGGGCCAGCTGGAGACATCTAACAGACTGGACATAGTGGATCAGATGGTGCAGAAATACAGGGGGAATGTGGCTGTGCAGATCACACTGATAATCCTGAAGAAGATTAGCCGCAACGATCTCGCTGAGAAGCTAAACAGAGACTGTCCAATAGGTCCTTCAGATGAAGATGGTGAGAAGTTCCAACATGAATATAAACTGGAAGTAAAAAAGAAGTTTCAGCATGTTTTCAACGGGGTACCAAAGCAGGGCCATAAACGACTTCTCAATGagatctacacagagctctacatcacagagggtggaaGTGGAGAGGTCAATCAGGAACATGAGGTGAGACAGATCGAGATCATGTCCAAGAATCCAGCAAGACCAGAGGCTCAAATCCTCTGCAATGACATCTTCAAACAATCCTCTGGACAAGACAAACCtatcagaactgtgctgacaaagggagtcgctggcattggaaaaacagttTGTGTGCAGAAGTTCATTCTGGATTGGGCTGAAGGGAAAGCCAATCAGGATGTCCAATTCGTAATTTCACTCCCTTTTCGGGAGCTGAATTTGGTGAGGGGGGAAAAGTACAGTTTTGTAGAACTTCTACATAAATGTGTCTTAGAGACTAGAGTGATTGAGAGGGACTTTTTGAATCACATTTTAACAAAATTGCAAAAACCAGGAAACTGCAATGAAAGCAAGTACAAAGTTATATTTGTCcttgatggtctggatgagtgccGACTGACCCTCGACTACGAGACCGGTAAGAGCTGGTGTAATGTCACAGAGCCAACCTCAGTGGACGTGCTGCTGACAAATCTCATCAAGGGAAATCTGCTTCTACctgctctcctctggataacCTCTAGACCTGCAGCAACCAATCACATCCCTCCTGggtgtgttgaccaggtgacagaggtacgagggttcaatgaCCCACAGAAGGAGGAGTATTTCAGGAAGACATTCAGTGATGAGGACCTGGCCAACAGAATCATCTCACACGtaaagacatcaaggagcctccacatcatgtgccacattccagtcttctgttggatctTAGCTGCAGTTCTGGAGCATGTGTTGAGTACAGATAAGAATGAAGAGATGCCCAAGACTCTGACTCAATTATTTATTGGGTTACTGATATTTCAGACCAAACAGATGAATGATAAATATCACAAGAAAGGTGAGCGAGATCCACGCAGGGATAAAGAGAGCTTCATGGCACTGGGGAAACTTGCTTTTAACCAgctggaaaatggcaacctaattTTCTATGAGGCAGACCTGAAAAAGTATGGCATTGATGTCACTGAAGCCTCAGTGAACTCAGGAGTGTGTACACAGATCTTTAGACAGGACTATGGGCCGTTCCAGAACAAGGTGTACTGCTTTGTGCATCTGAGCGttcaggagtttctggctgcGTTATATGTTTTCCTCTCCTTCAACAACAGCAATGTCAACCTGATGACCAAAGACCGATCCTTCATCAGAAAATGTCTAGTGAAGTTGAATCCTGCCATCACCTTCCACACGATTGCAGTGGATAAAGCCTTACAGAGTGAGAATGGACACCTGGACCTgttcctccgcttccttctgggcctctcactggagtccaatcagacTCACTTACACGGCCTACTGACACAGACAAGAAGCACCAGAAGCAGCTCACGGGGCCATGAGAAAACAGTCAAGTACATCAAGAAGAAGATCAGGAACACTCCATCTTCAGAGAGGTgcatcaatctgttccactgtctgaatgaactgaatgaccattctctagtggaggagatccaaAGATACCTGCATTCAGGAAATCTGTCCAAAACCAAACTATCACCtgcacagtggtcagctctggtatttgtgttgctgacttcagaagaggagctggatgtgtttgacctgaagaaatactccagatcagaggaaggtcttCTGAGGCTGCTGCCAGTGGTCAAAGCCTCCAGAACTGTTCTGCTTAATGGGTGTAACCTCACTGAGAAATGCTGTGAAGCCTTGGCCTCAGCTTTCAACTCAACCTCCTCaaacctgagagagctggacctgagtgacaacaacctgcaggattcaggagtgaagctgctctctgctggactggagaatccacactgtaaactggagacactgagGTTGTCATGCTGTCTGATCACAAAgaaaggctgtgcttctctggcctCAGCTCTGAGGTCCAACCCCTCctacctgagagagctggacctgagctacaatatcccaggagactcaggagtgaagcagctctctgctggactggaggatccacactggagactggagaaactcaaTGTTGACCACCGTGGAGAGTACTGGCTGCTGAAAAAATATgcctgtgatgtcacactggaCCCGAACACAGCATGCAGACACCTCTCTCTGTCGGAGGGGAACAGGAAGGTGACACGGGGGAAAGAGGAGCAGCCGTATCCTGATCGCCCAGGGAGATTTGAGTTCTGGCCacaggtgctgtgtagagagggtctgactgggcgctgttactgggaggcAGAGATGAGTGGGGGAGGCGATGACATAGGAATGACGTACAGAGGAATCGGCAGGACAGGAAACGCCGATGACAGTAAGCTTGGATGCAATGACAAGTCCTGGAGTCTGAGCTGCTCTGATTACGGTTACACTGCCAGGCACAATAAGGAGAGAACTGACTTACCTGCCTCCTCCTCGTCCaacagagtaggagtgtatctggactggccggccggcactctgtccttctacactctgtcctcctctgacacactcactcacctaCACACATTCCGCTCCACATTCACTGAGCctctctatccagggttttgggttgaAATAAACTCCTCATTGTCCCTATGTGAGGTCAAAAACCTTTAGGTGGTAAACGATGGATCTTGTTGTTATTGATCGTTGTTTGTAAATAATGTTTATTTAGTCAAATGGTTGACATTGCAATCCTGATTCTGTTTGAAGTCAATAACACTGAATGGACCTTTCCCGGTACACATTCGGCCAGATAAAGACAAATAAAACTGGTTGTTTTAAAAAACtgttaaa

Function

NR:

description
NACHT, LRR and PYD domains-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939405.1 True 3253 mRNA 0.47 6 97414572 97424333

Neighbor

gene id symbol gene type direction distance location
LOC110539046 LOC106596079 coding downstream 15113 97394628 ~ 97399459 (-)
LOC110538791 LOC106601922 coding downstream 28373 97378339 ~ 97386199 (-)
LOC110539048 LOC106602018 coding downstream 58616 97348134 ~ 97355956 (-)
LOC118937807 NA coding downstream 93750 97306579 ~ 97320822 (-)
LOC118936515 LOC106606334 coding downstream 251435 97158018 ~ 97163137 (-)
LOC118937836 NA coding upstream 19652 97443985 ~ 97447215 (-)
LOC110538797 abcc1 coding upstream 26195 97450528 ~ 97509183 (-)
LOC110538805 LOC106592410 coding upstream 103805 97527207 ~ 97574077 (-)
LOC110539076 LOC106606268 coding upstream 195970 97620303 ~ 97715255 (-)
LOC110538885 LOC106602057 coding upstream 291405 97715738 ~ 97740971 (-)
G1131211 NA non-coding downstream 17885 97309557 ~ 97396687 (-)
G1131208 NA non-coding downstream 60943 97309060 ~ 97353629 (-)
G1131205 NA non-coding downstream 95486 97314602 ~ 97319086 (-)
G1131083 NA non-coding downstream 123754 97286761 ~ 97290818 (-)
G1131047 NA non-coding downstream 210202 97203878 ~ 97204370 (-)
G1131254 NA non-coding upstream 4498 97428831 ~ 97429199 (-)
G1131256 NA non-coding upstream 10024 97434357 ~ 97439794 (-)
G1131266 NA non-coding upstream 27431 97451764 ~ 97452113 (-)
G1131273 NA non-coding upstream 43683 97468016 ~ 97468635 (-)
G1131282 NA non-coding upstream 63357 97487690 ~ 97489374 (-)
LOC110515892 syt17 other downstream 307816 97078111 ~ 97137134 (-)
LOC110519445 smg1 other downstream 432632 96898792 ~ 97043408 (-)
LOC110487147 LOC106601974 other downstream 547149 96858442 ~ 96867462 (-)
LOC110518479 LOC106591170 other downstream 698937 96714290 ~ 96728931 (-)
G1131255 NA other upstream 5752 97430085 ~ 97433418 (-)
G1131270 NA other upstream 37480 97461813 ~ 97462271 (-)
G1131656 NA other upstream 288301 97712634 ~ 97713116 (-)
LOC110538882 LOC106601977 other upstream 354322 97764189 ~ 97787224 (-)

Expression


Co-expression Network