LOC110539076 (LOC106606268)


Basic Information

Item Value
gene id LOC110539076
gene name LOC106606268
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 97620303 ~ 97715255 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939411.1
ATTCAAACCGGCACGCtgcagtgtcagtgtgtgtgagcaagggtGTGTTAGCTGTTCTGTTGACGGTATAGTGTGTTAGCTGTTCTGTTGACGGTATAGTGTGTTAGCTGTTCTGTTGACGGTACAGTGTGTTAGCTGTTCTGTTAACGGTACAGTGTGCTAGCTGTTCTGTTGACGGTATAGTGTGTTAGCTGTTCTGTTGACGGTACAGTGTGTTAGCTGTTCTGTTAACGGTACAGTGTGCTAGCTGTTCTGTTGACGGTATAGTGTGTTAGCTGTTCTGTTGACGGTACAGTGTGTTAGCTGTTCTGTTGACGGTATAGTGTGTTAGCTGTTCTGTTGACGGTATAGTGTGTTAGCTGTTCTGTTGACGGTATAGTGTGTTAGCTGTTCTGTTGACGGTACAGTGTGTTAGCTGTTCTGTTGACGGTTCAGTGCTGGAGCGCTGGTGTAGTGTGTTCGTCGCTGGTCTTCTTCTATCAAAATTTCTGTGGATTGTAATTGGAGGAATACTGTTTGGGCTGGACCtattggactgtgtgtgtgtgttcggacCTGGcatacacacgtgtgtgtgtgtgtgtatgaacgaTCTATATTGTGACTGAACAACACGTGTGTATGAACGATCTATAGTGTGACTGAACAACACACGTGCAGACGGTAATTGTTAGGAGGGTGTGGATTACCCGTGTCTGGGCAGTGTGTGTGGATGTCTGTGGCAGTGGAATCAGGAATGGACAGCACacttcagaggagaggagagagccccccTGCAATGGACTTCACGaACGGCGAGGCCCGACTGGGCCCTCCCATCATCATGTGTACCCGTCCATACCCAGACTGCAGTGTGGAGCAGGGGGAGTGTTGTGACATGGACAGCACCAATGAGAGCGGTGTGGGCTCTGACACCTCTGACGGGGGGCGGAGCaatgagaaggaggaggggctagGTGGACTGTTCAACAATTCTGGCCAGCTGATTGGCTCTGCTTCTGCGTCCGTCTTCTCGGGGGAGGAACAGTTTGAGGACTACGGAGAGGGGGAGGACGTGGACTACACTCCCAGCAGCCCTTGCCCCGACGATGACGCTCGCACCAACGGCTTCTCAGACCTCGGCTCCTCCCTGCCCTCCAGtgCTGGTCAGACCCCTCTGAAGATGTGTCACCTGTACaacagtgatgtgttggatgtCTATTGTTCTCAGTGCTATAAGAAGGTTAACCTGCTCAACGACCTGGAGGCCAGGCTCAACAACCTCAGAGCCAACagCCCCAACAGAAAGATATCCAGCACTGCCTTTGGACGTCAGTTGTTCCAACACAACCACAGTGCTTTTAGCAGCAGTCAGGGAAGCACAGAGGACCTGTTCAGAGACTCCATCGACTCTTGTGATGTGGACATTACTGAGAAGGTGAGTTACCTGGAGAAGAAGGTGACCGAGCTGGAGAATGACAGTCTGGCTAATGGAGACCTCAAGTGTAAACTCAAACAGGGCAACACACAGCTAGTACACAgggtTCATGAGCTGGAGGAGCAGCTGAAGGAtcaggagagcagagcagatcaGACCCTGGAGGAagagacacatagacacagagagaccTACTgcaagatggagagagacaagAACACGGACATAGAGCTGCTCAGTAACAGAGTTcagcagctggaggaggagaaTGGGGAGATGAAACTAAACGTGTGTAAACTGAAGTCTCAGACTGAGAAACTAGACCAGgagAAGCAGCGTATGACAGACCGGTTAGAGGACACCAGTCTGAGGCTGAAGGATGAGATGGACCTCTACAGGAAGATGATGGACAAGCTGTGGCAGAACAGACATGAAttccagaaggagagagaggccatGCAAGAgTTGATAGAGGACCTGCGTCGGGAGTTGGAGCACCTGCAGCTGTTTAAGCTGGGTTCAGAGGCGGGGCAGGGGGCGGGGCTATCAGAATACAACGCCAAGACACGGGAAATAGAGATGGAGCATGAGGTCAAGAGACTCAAACAGGAGAACTTTAAGCTGCGGGACCAGAACGATGACCTGAACAGTCAGATCCTCAGTCTGAGTCTGTATGAAGCTAAGAACCTGTTTGCCTGCCACACCAAGGCCCAGTCACTGGCTGCTGAGATCGACAACGCTTCTAGGGACGAGTTGGTGGATGCTCTGAAGGAACAGGAGTGTGTTAACCTACGTCTGAGACAGTATATGGATAAAATCATCTTGGCCATTCTGGACCACAACCCCTCTATCCTGGAGATCAAGAGTaacagttaaacacacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac
>XM_036939412.1
CTTGTTCACAACCCTTAACACACCAGAGAGAAAGAAGGGCAGGTGTGGTAGCAGTGTTTGTAGCACAGCCAGCTAGCCTTCTAGATGTCTACACAGCCAGCAGTACATaACGGCGAGGCCCGACTGGGCCCTCCCATCATCATGTGTACCCGTCCATACCCAGACTGCAGTGTGGAGCAGGGGGAGTGTTGTGACATGGACAGCACCAATGAGAGCGGTGTGGGCTCTGACACCTCTGACGGGGGGCGGAGCaatgagaaggaggaggggctagGTGGACTGTTCAACAATTCTGGCCAGCTGATTGGCTCTGCTTCTGCGTCCGTCTTCTCGGGGGAGGAACAGTTTGAGGACTACGGAGAGGGGGAGGACGTGGACTACACTCCCAGCAGCCCTTGCCCCGACGATGACGCTCGCACCAACGGCTTCTCAGACCTCGGCTCCTCCCTGCCCTCCAGtgCTGGTCAGACCCCTCTGAAGATGTGTCACCTGTACaacagtgatgtgttggatgtCTATTGTTCTCAGTGCTATAAGAAGGTTAACCTGCTCAACGACCTGGAGGCCAGGCTCAACAACCTCAGAGCCAACagCCCCAACAGAAAGATATCCAGCACTGCCTTTGGACGTCAGTTGTTCCAACACAACCACAGTGCTTTTAGCAGCAGTCAGGGAAGCACAGAGGACCTGTTCAGAGACTCCATCGACTCTTGTGATGTGGACATTACTGAGAAGGTGAGTTACCTGGAGAAGAAGGTGACCGAGCTGGAGAATGACAGTCTGGCTAATGGAGACCTCAAGTGTAAACTCAAACAGGGCAACACACAGCTAGTACACAgggtTCATGAGCTGGAGGAGCAGCTGAAGGAtcaggagagcagagcagatcaGACCCTGGAGGAagagacacatagacacagagagaccTACTgcaagatggagagagacaagAACACGGACATAGAGCTGCTCAGTAACAGAGTTcagcagctggaggaggagaaTGGGGAGATGAAACTAAACGTGTGTAAACTGAAGTCTCAGACTGAGAAACTAGACCAGgagAAGCAGCGTATGACAGACCGGTTAGAGGACACCAGTCTGAGGCTGAAGGATGAGATGGACCTCTACAGGAAGATGATGGACAAGCTGTGGCAGAACAGACATGAAttccagaaggagagagaggccatGCAAGAgTTGATAGAGGACCTGCGTCGGGAGTTGGAGCACCTGCAGCTGTTTAAGCTGGGTTCAGAGGCGGGGCAGGGGGCGGGGCTATCAGAATACAACGCCAAGACACGGGAAATAGAGATGGAGCATGAGGTCAAGAGACTCAAACAGGAGAACTTTAAGCTGCGGGACCAGAACGATGACCTGAACAGTCAGATCCTCAGTCTGAGTCTGTATGAAGCTAAGAACCTGTTTGCCTGCCACACCAAGGCCCAGTCACTGGCTGCTGAGATCGACAACGCTTCTAGGGACGAGTTGGTGGATGCTCTGAAGGAACAGGAGTGTGTTAACCTACGTCTGAGACAGTATATGGATAAAATCATCTTGGCCATTCTGGACCACAACCCCTCTATCCTGGAGATCAAGAGTaacagttaaacacacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac
>XM_036939409.1
ACGGGATGCTGCTGATGTCACGGCACCAACCGAGCCAGTCAACAACGGCACCAGCGGAGAACGGCAACCGGAATGATGGCGAATACAGAACCCATTCAAACAAAGTCCGTCCAATAACGACGTTATCTGACAAACCGAACTCTTAAGATGGAAGGAAACGTCTTCCCCGACCAAGAACAGCTTCTAGGCTTCCTGAAAAAGCTCAAGGAGGTATTCGACGTGTGTGATGAGGATGCTGACGGTTATATTCGGGTCGAACATTTTGTGGATTTGGGGCTTCAGTTCGGGCAGGGGGACAGAGATGAGGTGAAGAAGTTGACTAAGTACCTGGATCCCAACTCTCACGGCAGGATCAACTTCAAAGACTTCTGCTATGGGGTGTTCGCCATCAAGGGATGTGAGGAGATTCTGAAGACAGCTCTGGGTCCTCGTAGTATACCCATTCAGACTGACAATGgatacatctaccagaACGGCGAGGCCCGACTGGGCCCTCCCATCATCATGTGTACCCGTCCATACCCAGACTGCAGTGTGGAGCAGGGGGAGTGTTGTGACATGGACAGCACCAATGAGAGCGGTGTGGGCTCTGACACCTCTGACGGGGGGCGGAGCaatgagaaggaggaggggctagGTGGACTGTTCAACAATTCTGGCCAGCTGATTGGCTCTGCTTCTGCGTCCGTCTTCTCGGGGGAGGAACAGTTTGAGGACTACGGAGAGGGGGAGGACGTGGACTACACTCCCAGCAGCCCTTGCCCCGACGATGACGCTCGCACCAACGGCTTCTCAGACCTCGGCTCCTCCCTGCCCTCCAGtgCTGGTCAGACCCCTCTGAAGATGTGTCACCTGTACaacagtgatgtgttggatgtCTATTGTTCTCAGTGCTATAAGAAGGTTAACCTGCTCAACGACCTGGAGGCCAGGCTCAACAACCTCAGAGCCAACagCCCCAACAGAAAGATATCCAGCACTGCCTTTGGACGTCAGTTGTTCCAACACAACCACAGTGCTTTTAGCAGCAGTCAGGGAAGCACAGAGGACCTGTTCAGAGACTCCATCGACTCTTGTGATGTGGACATTACTGAGAAGGTGAGTTACCTGGAGAAGAAGGTGACCGAGCTGGAGAATGACAGTCTGGCTAATGGAGACCTCAAGTGTAAACTCAAACAGGGCAACACACAGCTAGTACACAgggtTCATGAGCTGGAGGAGCAGCTGAAGGAtcaggagagcagagcagatcaGACCCTGGAGGAagagacacatagacacagagagaccTACTgcaagatggagagagacaagAACACGGACATAGAGCTGCTCAGTAACAGAGTTcagcagctggaggaggagaaTGGGGAGATGAAACTAAACGTGTGTAAACTGAAGTCTCAGACTGAGAAACTAGACCAGgagAAGCAGCGTATGACAGACCGGTTAGAGGACACCAGTCTGAGGCTGAAGGATGAGATGGACCTCTACAGGAAGATGATGGACAAGCTGTGGCAGAACAGACATGAAttccagaaggagagagaggccatGCAAGAgTTGATAGAGGACCTGCGTCGGGAGTTGGAGCACCTGCAGCTGTTTAAGCTGGGTTCAGAGGCGGGGCAGGGGGCGGGGCTATCAGAATACAACGCCAAGACACGGGAAATAGAGATGGAGCATGAGGTCAAGAGACTCAAACAGGAGAACTTTAAGCTGCGGGACCAGAACGATGACCTGAACAGTCAGATCCTCAGTCTGAGTCTGTATGAAGCTAAGAACCTGTTTGCCTGCCACACCAAGGCCCAGTCACTGGCTGCTGAGATCGACAACGCTTCTAGGGACGAGTTGGTGGATGCTCTGAAGGAACAGGAGTGTGTTAACCTACGTCTGAGACAGTATATGGATAAAATCATCTTGGCCATTCTGGACCACAACCCCTCTATCCTGGAGATCAAGAGTaacagttaaacacacacacacacacacacacacactcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: rab11 family-interacting protein 4A-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0000910 cytokinesis biological_process
GO:0048592 eye morphogenesis biological_process
GO:0006810 transport biological_process
GO:0030139 endocytic vesicle cellular_component
GO:0055038 recycling endosome membrane cellular_component
GO:0030496 midbody cellular_component
GO:0032154 cleavage furrow cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0042803 protein homodimerization activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K12485 RAB11FIP3_4; Rab11 family-interacting protein 3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939411.1 False 2409 mRNA 0.51 13 97620303 97649587
XM_036939412.1 False 1727 mRNA 0.53 13 97620303 97654151
XM_036939409.1 True 2090 mRNA 0.52 15 97620303 97715255

Neighbor

gene id symbol gene type direction distance location
LOC110538805 LOC106592410 coding downstream 53850 97527207 ~ 97574077 (-)
LOC110538797 abcc1 coding downstream 111120 97450528 ~ 97509183 (-)
LOC118937836 NA coding downstream 173088 97443985 ~ 97447215 (-)
LOC118937808 LOC106601922 coding downstream 195970 97414572 ~ 97424333 (-)
LOC110539046 LOC106596079 coding downstream 220844 97394628 ~ 97399459 (-)
LOC110538885 LOC106602057 coding upstream 483 97715738 ~ 97740971 (-)
LOC110538882 LOC106601977 coding upstream 48934 97764189 ~ 97787224 (-)
LOC110487093 LOC105031326 coding upstream 150399 97864865 ~ 97878576 (-)
LOC110487090 LOC106606200 coding upstream 202482 97917737 ~ 97943871 (-)
LOC110487083 tigd1 coding upstream 232023 97947278 ~ 97949231 (-)
G1131625 NA non-coding downstream 1123 97615964 ~ 97619180 (-)
G1131360 NA non-coding downstream 6535 97613530 ~ 97613768 (-)
G1131350 NA non-coding downstream 14559 97605529 ~ 97605744 (-)
G1131343 NA non-coding downstream 18289 97600932 ~ 97602014 (-)
G1131331 NA non-coding downstream 25364 97594555 ~ 97594939 (-)
G1131701 NA non-coding upstream 67910 97783165 ~ 97783375 (-)
G1131702 NA non-coding upstream 69188 97784443 ~ 97784734 (-)
G1131669 NA non-coding upstream 77618 97792873 ~ 97793378 (-)
G1131705 NA non-coding upstream 82952 97798207 ~ 97798453 (-)
G1131707 NA non-coding upstream 92676 97807931 ~ 97808469 (-)
G1131270 NA other downstream 158032 97461813 ~ 97462271 (-)
G1131255 NA other downstream 186885 97430085 ~ 97433418 (-)
G1131230 LOC106601922 other downstream 196183 97383100 ~ 97424120 (-)
G1131229 LOC106601922 other downstream 203735 97378548 ~ 97416568 (-)
G1131720 NA other upstream 137531 97852786 ~ 97853593 (-)
G1131666 NA other upstream 142344 97857599 ~ 97860518 (-)
LOC110485313 LOC106535622 other upstream 244537 97959753 ~ 97974748 (-)
LOC118936513 cog1 other upstream 543627 98230363 ~ 98259687 (-)

Expression


Co-expression Network